Gvermi12108.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12108.t1
Unique Name	Gvermi12108.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	578

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:3434451..3436184 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	50452.A0A087HJM7
PFAMs	MCM_bind
Max annot lvl	35493\|Streptophyta
GOs	GO:0000228,GO:0000785,GO:0000790,GO:0000819,GO:0003674,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006301,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009526,GO:0009536,GO:0009941,GO:0009987,GO:0016043,GO:0022402,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0042555,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0050896,GO:0051276,GO:0051716,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0098813,GO:1901360,GO:1901576
Evalue	4.5e-49
EggNOG OGs	KOG2545@1\|root,KOG2545@2759\|Eukaryota,37N95@33090\|Viridiplantae,3GC6I@35493\|Streptophyta,3HSGG@3699\|Brassicales
Description	Mini-chromosome maintenance replisome factor
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12108	Gvermi12108	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 3434451..3436184 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12108.t1.stop1	Gvermi12108.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 3434451..3434453 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12108.t1.CDS1	Gvermi12108.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 3434451..3436184 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12108.t1.exon1	Gvermi12108.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 3434451..3436184 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12108.t1.start1	Gvermi12108.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 3436182..3436184 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12108.t1	Gvermi12108.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 3434451..3436184 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:3434451..3436184-
coding sequence from alignment at ScGOVlb_3404:3434451..3436184-

mRNA sequence

>Gvermi12108.t1 ID=Gvermi12108.t1|Name=Gvermi12108.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=578bp
MVGIPTNFTKDPVATAHTLIKQSGTQVDSVLSALVPPPLEHIPRVGDPRA
KVGAWVRFDAMVQDIWDTELFVTSSPDGNSGLLVENAAASDHPDAKLCER
LPVYLVSLPGQMRWTKPDPIRSVSTHQVLNGAGGQKRPRESDEQMSDVCQ
DGSKSKPYPETQTGVKRLCTDGTSGSMPLPSMGLNLPVHNQPGATAIVAK
LYDTNKARDLRINTMVQVVGVLHDGLEFTLNGNRDQSDPLHTEVLARNPG
NVKRLHVVEWREMEPWELNPLTKVLGTQGIVEAKKEALSVAGGLREMLIR
YLASALCNDLLAAEYLLMCLLSRPVRTNGENVLGKLSVNLVLPKDFSLEK
SKEISAAIGNLCPSVVDLDVNISSLNSTQMYPRKDYDMNRLKAGALQMSS
GTCLIGNESKMSNGELAERGVKNIRALTSVSQRCCMPIDFVYYESEVGVN
CCTVLVSKGGKSVVSADVMVRVKPDAGLGLQGFKTYSPDLMRKLRLALAL
FAEDGEFDISPEAMRDVEKVYVEARRRGEAKDGQETLQKWLGVARCCART
YGESKLSIERWRHAVELERQREQRERC*

spliced messenger RNA

>Gvermi12108.t1 ID=Gvermi12108.t1|Name=Gvermi12108.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1734bp|location=Sequence derived from alignment at ScGOVlb_3404:3434451..3436184- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGGCATACCCACAAATTTCACCAAGGACCCAGTCGCAACTGCGCA
CACTCTCATTAAGCAATCTGGAACTCAAGTCGACAGCGTTCTATCAGCTC
TTGTCCCTCCTCCGTTGGAACACATTCCGCGCGTTGGCGACCCCCGCGCA
AAGGTGGGAGCATGGGTGCGTTTTGATGCTATGGTTCAAGATATATGGGA
CACTGAACTCTTTGTCACATCATCACCGGATGGTAACTCTGGTCTGCTCG
TTGAGAATGCCGCAGCGTCCGACCACCCAGACGCCAAGTTATGCGAGAGA
CTCCCAGTGTACCTTGTTTCGCTTCCAGGTCAAATGAGATGGACAAAACC
GGACCCAATTCGCTCAGTATCTACGCACCAAGTTCTCAACGGAGCTGGGG
GCCAGAAGCGACCTCGTGAGTCTGACGAACAAATGTCCGATGTTTGCCAG
GACGGTAGCAAATCGAAGCCGTATCCGGAAACACAAACAGGTGTCAAAAG
ACTATGCACCGATGGTACTTCGGGGTCTATGCCGCTGCCGTCCATGGGCC
TCAATTTACCGGTCCATAATCAGCCTGGTGCAACCGCGATCGTTGCGAAG
CTGTATGACACCAACAAAGCCCGGGACTTGCGGATCAATACCATGGTGCA
AGTTGTCGGTGTGTTGCACGACGGTCTAGAATTCACACTGAATGGAAATA
GGGACCAGAGTGATCCACTGCATACAGAAGTTCTTGCCCGCAATCCCGGA
AACGTAAAACGCTTGCACGTTGTTGAATGGAGGGAAATGGAGCCCTGGGA
GCTGAATCCATTAACAAAGGTGCTGGGTACTCAAGGAATTGTCGAAGCGA
AAAAAGAAGCTCTAAGTGTTGCTGGTGGTCTCCGAGAAATGTTGATACGC
TACTTGGCTTCTGCTCTCTGCAATGACTTGCTCGCCGCCGAATACTTGCT
GATGTGTCTCTTATCGAGACCGGTTCGAACTAATGGTGAAAACGTTCTCG
GCAAACTGTCGGTCAATCTGGTTCTGCCAAAAGATTTCTCTTTAGAAAAG
AGCAAAGAGATCAGCGCAGCCATCGGAAATCTATGCCCCTCCGTCGTCGA
CCTTGACGTGAACATCTCGTCTCTGAACTCGACACAGATGTATCCAAGGA
AGGACTACGACATGAACAGACTGAAAGCCGGAGCGCTTCAAATGTCTTCC
GGAACATGCCTCATTGGCAATGAGAGTAAAATGAGTAATGGCGAATTAGC
CGAGCGAGGGGTGAAAAACATTCGTGCATTAACTTCTGTGTCACAGAGAT
GCTGCATGCCAATTGATTTTGTGTACTATGAATCGGAGGTTGGAGTTAAC
TGTTGTACCGTTTTGGTTTCGAAGGGCGGTAAATCTGTTGTTTCAGCGGA
CGTGATGGTCCGTGTGAAGCCGGACGCTGGACTTGGACTTCAAGGGTTTA
AGACATACTCTCCGGACTTGATGAGAAAGCTGAGGCTTGCATTGGCACTG
TTTGCTGAAGACGGTGAATTTGATATATCACCTGAGGCAATGAGAGATGT
CGAGAAGGTATATGTGGAGGCGAGACGTCGAGGTGAAGCCAAAGACGGGC
AGGAAACACTTCAGAAATGGCTCGGTGTGGCCCGTTGCTGCGCTCGTACA
TATGGAGAGAGCAAGCTGAGCATTGAAAGATGGCGGCATGCCGTAGAGCT
GGAGCGTCAACGGGAGCAACGAGAGAGATGCTAG

protein sequence of Gvermi12108.t1

>Gvermi12108.t1 ID=Gvermi12108.t1|Name=Gvermi12108.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=578bp
MVGIPTNFTKDPVATAHTLIKQSGTQVDSVLSALVPPPLEHIPRVGDPRA
KVGAWVRFDAMVQDIWDTELFVTSSPDGNSGLLVENAAASDHPDAKLCER
LPVYLVSLPGQMRWTKPDPIRSVSTHQVLNGAGGQKRPRESDEQMSDVCQ
DGSKSKPYPETQTGVKRLCTDGTSGSMPLPSMGLNLPVHNQPGATAIVAK
LYDTNKARDLRINTMVQVVGVLHDGLEFTLNGNRDQSDPLHTEVLARNPG
NVKRLHVVEWREMEPWELNPLTKVLGTQGIVEAKKEALSVAGGLREMLIR
YLASALCNDLLAAEYLLMCLLSRPVRTNGENVLGKLSVNLVLPKDFSLEK
SKEISAAIGNLCPSVVDLDVNISSLNSTQMYPRKDYDMNRLKAGALQMSS
GTCLIGNESKMSNGELAERGVKNIRALTSVSQRCCMPIDFVYYESEVGVN
CCTVLVSKGGKSVVSADVMVRVKPDAGLGLQGFKTYSPDLMRKLRLALAL
FAEDGEFDISPEAMRDVEKVYVEARRRGEAKDGQETLQKWLGVARCCART
YGESKLSIERWRHAVELERQREQRERC*

mRNA from alignment at ScGOVlb_3404:3434451..3436184-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12108.t1 ID=Gvermi12108.t1|Name=Gvermi12108.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1734bp|location=Sequence derived from alignment at ScGOVlb_3404:3434451..3436184- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTTGGCATACCCACAAATTTCACCAAGGACCCAGTCGCAACTGCGCA
CACTCTCATTAAGCAATCTGGAACTCAAGTCGACAGCGTTCTATCAGCTC
TTGTCCCTCCTCCGTTGGAACACATTCCGCGCGTTGGCGACCCCCGCGCA
AAGGTGGGAGCATGGGTGCGTTTTGATGCTATGGTTCAAGATATATGGGA
CACTGAACTCTTTGTCACATCATCACCGGATGGTAACTCTGGTCTGCTCG
TTGAGAATGCCGCAGCGTCCGACCACCCAGACGCCAAGTTATGCGAGAGA
CTCCCAGTGTACCTTGTTTCGCTTCCAGGTCAAATGAGATGGACAAAACC
GGACCCAATTCGCTCAGTATCTACGCACCAAGTTCTCAACGGAGCTGGGG
GCCAGAAGCGACCTCGTGAGTCTGACGAACAAATGTCCGATGTTTGCCAG
GACGGTAGCAAATCGAAGCCGTATCCGGAAACACAAACAGGTGTCAAAAG
ACTATGCACCGATGGTACTTCGGGGTCTATGCCGCTGCCGTCCATGGGCC
TCAATTTACCGGTCCATAATCAGCCTGGTGCAACCGCGATCGTTGCGAAG
CTGTATGACACCAACAAAGCCCGGGACTTGCGGATCAATACCATGGTGCA
AGTTGTCGGTGTGTTGCACGACGGTCTAGAATTCACACTGAATGGAAATA
GGGACCAGAGTGATCCACTGCATACAGAAGTTCTTGCCCGCAATCCCGGA
AACGTAAAACGCTTGCACGTTGTTGAATGGAGGGAAATGGAGCCCTGGGA
GCTGAATCCATTAACAAAGGTGCTGGGTACTCAAGGAATTGTCGAAGCGA
AAAAAGAAGCTCTAAGTGTTGCTGGTGGTCTCCGAGAAATGTTGATACGC
TACTTGGCTTCTGCTCTCTGCAATGACTTGCTCGCCGCCGAATACTTGCT
GATGTGTCTCTTATCGAGACCGGTTCGAACTAATGGTGAAAACGTTCTCG
GCAAACTGTCGGTCAATCTGGTTCTGCCAAAAGATTTCTCTTTAGAAAAG
AGCAAAGAGATCAGCGCAGCCATCGGAAATCTATGCCCCTCCGTCGTCGA
CCTTGACGTGAACATCTCGTCTCTGAACTCGACACAGATGTATCCAAGGA
AGGACTACGACATGAACAGACTGAAAGCCGGAGCGCTTCAAATGTCTTCC
GGAACATGCCTCATTGGCAATGAGAGTAAAATGAGTAATGGCGAATTAGC
CGAGCGAGGGGTGAAAAACATTCGTGCATTAACTTCTGTGTCACAGAGAT
GCTGCATGCCAATTGATTTTGTGTACTATGAATCGGAGGTTGGAGTTAAC
TGTTGTACCGTTTTGGTTTCGAAGGGCGGTAAATCTGTTGTTTCAGCGGA
CGTGATGGTCCGTGTGAAGCCGGACGCTGGACTTGGACTTCAAGGGTTTA
AGACATACTCTCCGGACTTGATGAGAAAGCTGAGGCTTGCATTGGCACTG
TTTGCTGAAGACGGTGAATTTGATATATCACCTGAGGCAATGAGAGATGT
CGAGAAGGTATATGTGGAGGCGAGACGTCGAGGTGAAGCCAAAGACGGGC
AGGAAACACTTCAGAAATGGCTCGGTGTGGCCCGTTGCTGCGCTCGTACA
TATGGAGAGAGCAAGCTGAGCATTGAAAGATGGCGGCATGCCGTAGAGCT
GGAGCGTCAACGGGAGCAACGAGAGAGATGCTAG

Coding sequence (CDS) from alignment at ScGOVlb_3404:3434451..3436184-

>Gvermi12108.t1 ID=Gvermi12108.t1|Name=Gvermi12108.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1734bp|location=Sequence derived from alignment at ScGOVlb_3404:3434451..3436184- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTTGGCATACCCACAAATTTCACCAAGGACCCAGTCGCAACTGCGCA
CACTCTCATTAAGCAATCTGGAACTCAAGTCGACAGCGTTCTATCAGCTC
TTGTCCCTCCTCCGTTGGAACACATTCCGCGCGTTGGCGACCCCCGCGCA
AAGGTGGGAGCATGGGTGCGTTTTGATGCTATGGTTCAAGATATATGGGA
CACTGAACTCTTTGTCACATCATCACCGGATGGTAACTCTGGTCTGCTCG
TTGAGAATGCCGCAGCGTCCGACCACCCAGACGCCAAGTTATGCGAGAGA
CTCCCAGTGTACCTTGTTTCGCTTCCAGGTCAAATGAGATGGACAAAACC
GGACCCAATTCGCTCAGTATCTACGCACCAAGTTCTCAACGGAGCTGGGG
GCCAGAAGCGACCTCGTGAGTCTGACGAACAAATGTCCGATGTTTGCCAG
GACGGTAGCAAATCGAAGCCGTATCCGGAAACACAAACAGGTGTCAAAAG
ACTATGCACCGATGGTACTTCGGGGTCTATGCCGCTGCCGTCCATGGGCC
TCAATTTACCGGTCCATAATCAGCCTGGTGCAACCGCGATCGTTGCGAAG
CTGTATGACACCAACAAAGCCCGGGACTTGCGGATCAATACCATGGTGCA
AGTTGTCGGTGTGTTGCACGACGGTCTAGAATTCACACTGAATGGAAATA
GGGACCAGAGTGATCCACTGCATACAGAAGTTCTTGCCCGCAATCCCGGA
AACGTAAAACGCTTGCACGTTGTTGAATGGAGGGAAATGGAGCCCTGGGA
GCTGAATCCATTAACAAAGGTGCTGGGTACTCAAGGAATTGTCGAAGCGA
AAAAAGAAGCTCTAAGTGTTGCTGGTGGTCTCCGAGAAATGTTGATACGC
TACTTGGCTTCTGCTCTCTGCAATGACTTGCTCGCCGCCGAATACTTGCT
GATGTGTCTCTTATCGAGACCGGTTCGAACTAATGGTGAAAACGTTCTCG
GCAAACTGTCGGTCAATCTGGTTCTGCCAAAAGATTTCTCTTTAGAAAAG
AGCAAAGAGATCAGCGCAGCCATCGGAAATCTATGCCCCTCCGTCGTCGA
CCTTGACGTGAACATCTCGTCTCTGAACTCGACACAGATGTATCCAAGGA
AGGACTACGACATGAACAGACTGAAAGCCGGAGCGCTTCAAATGTCTTCC
GGAACATGCCTCATTGGCAATGAGAGTAAAATGAGTAATGGCGAATTAGC
CGAGCGAGGGGTGAAAAACATTCGTGCATTAACTTCTGTGTCACAGAGAT
GCTGCATGCCAATTGATTTTGTGTACTATGAATCGGAGGTTGGAGTTAAC
TGTTGTACCGTTTTGGTTTCGAAGGGCGGTAAATCTGTTGTTTCAGCGGA
CGTGATGGTCCGTGTGAAGCCGGACGCTGGACTTGGACTTCAAGGGTTTA
AGACATACTCTCCGGACTTGATGAGAAAGCTGAGGCTTGCATTGGCACTG
TTTGCTGAAGACGGTGAATTTGATATATCACCTGAGGCAATGAGAGATGT
CGAGAAGGTATATGTGGAGGCGAGACGTCGAGGTGAAGCCAAAGACGGGC
AGGAAACACTTCAGAAATGGCTCGGTGTGGCCCGTTGCTGCGCTCGTACA
TATGGAGAGAGCAAGCTGAGCATTGAAAGATGGCGGCATGCCGTAGAGCT
GGAGCGTCAACGGGAGCAACGAGAGAGATGCTAG