Gvermi12106.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12106.t1
Unique NameGvermi12106.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length220
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3429575..3430234 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog109760.SPPG_01872T0
Preferred namePSF3
PFAMsSld5
Max annot lvl4751|Fungi
KEGG koko:K10734
KEGG ModuleM00286
GOsGO:0000228,GO:0000278,GO:0000724,GO:0000725,GO:0000727,GO:0000785,GO:0000790,GO:0000811,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007049,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0022402,GO:0031261,GO:0031298,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0033260,GO:0033554,GO:0034641,GO:0034645,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044786,GO:0046483,GO:0050896,GO:0051716,GO:0070013,GO:0071162,GO:0071704,GO:0090304,GO:1901360,GO:1901576,GO:1902292,GO:1902315,GO:1902969,GO:1902975,GO:1903047
Evalue2.96e-20
EggNOG OGsCOG5138@1|root,KOG1106@2759|Eukaryota,3A050@33154|Opisthokonta,3P24V@4751|Fungi
DescriptionDna replication complex gins protein psf3
COG categoryL
BRITEko00000,ko00002,ko03032
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12106Gvermi12106Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3429575..3430234 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12106.t1.start1Gvermi12106.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3429575..3429577 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12106.t1.CDS1Gvermi12106.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3429575..3430234 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12106.t1.exon1Gvermi12106.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3429575..3430234 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12106.t1.stop1Gvermi12106.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3430232..3430234 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12106.t1Gvermi12106.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3429575..3430234 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12106.t1 ID=Gvermi12106.t1|Name=Gvermi12106.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=220bp
MEDYFSIDDILAGDNRVFSTFRDDGYNIAYLDRMRVAEWNASHRTAEELD
NNPNIDKDMPKCIQVALPFWLAESLAAREFVSISLPRCFEKKAMQTLRVD
TRTVNLASMCKSYFTLGVRLAKLLVDVALPGALSRAFAARCWGITDSAAF
SGDKGAQAMRGFDWLECELFQEAHAMAVATRRWKERRGDRISALEPMLGK
RSREELGSPVTPSTRPRTS*
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spliced messenger RNA

>Gvermi12106.t1 ID=Gvermi12106.t1|Name=Gvermi12106.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=660bp|location=Sequence derived from alignment at ScGOVlb_3404:3429575..3430234+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGATTACTTTTCAATCGATGATATTCTTGCTGGTGACAATCGCGT
CTTCTCAACATTCCGTGATGATGGATACAACATCGCGTACCTTGATCGCA
TGCGTGTTGCAGAATGGAATGCATCTCACCGAACCGCAGAGGAACTTGAC
AATAACCCCAACATTGACAAGGATATGCCAAAATGTATACAAGTAGCATT
GCCCTTTTGGTTAGCTGAGTCTCTAGCAGCCCGGGAATTCGTTAGCATTA
GCCTTCCAAGATGTTTTGAGAAGAAAGCCATGCAAACTCTTCGCGTTGAT
ACACGGACAGTGAATCTCGCCTCTATGTGCAAGTCGTACTTCACCTTGGG
TGTTCGGCTTGCTAAACTACTAGTCGATGTGGCTTTGCCAGGGGCGCTTT
CCAGGGCGTTTGCGGCTCGCTGTTGGGGAATCACAGATTCTGCGGCCTTT
TCGGGTGACAAAGGGGCTCAGGCCATGAGAGGGTTCGATTGGCTTGAATG
TGAGCTCTTTCAAGAAGCACACGCGATGGCTGTCGCTACAAGGAGATGGA
AAGAACGGCGTGGGGATAGAATATCTGCATTGGAACCAATGCTTGGTAAA
AGGTCACGGGAAGAACTTGGCAGTCCTGTCACACCATCAACTCGTCCAAG
AACGAGTTAG
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protein sequence of Gvermi12106.t1

>Gvermi12106.t1 ID=Gvermi12106.t1|Name=Gvermi12106.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=220bp
MEDYFSIDDILAGDNRVFSTFRDDGYNIAYLDRMRVAEWNASHRTAEELD
NNPNIDKDMPKCIQVALPFWLAESLAAREFVSISLPRCFEKKAMQTLRVD
TRTVNLASMCKSYFTLGVRLAKLLVDVALPGALSRAFAARCWGITDSAAF
SGDKGAQAMRGFDWLECELFQEAHAMAVATRRWKERRGDRISALEPMLGK
RSREELGSPVTPSTRPRTS*
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mRNA from alignment at ScGOVlb_3404:3429575..3430234+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12106.t1 ID=Gvermi12106.t1|Name=Gvermi12106.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=660bp|location=Sequence derived from alignment at ScGOVlb_3404:3429575..3430234+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGGATTACTTTTCAATCGATGATATTCTTGCTGGTGACAATCGCGT
CTTCTCAACATTCCGTGATGATGGATACAACATCGCGTACCTTGATCGCA
TGCGTGTTGCAGAATGGAATGCATCTCACCGAACCGCAGAGGAACTTGAC
AATAACCCCAACATTGACAAGGATATGCCAAAATGTATACAAGTAGCATT
GCCCTTTTGGTTAGCTGAGTCTCTAGCAGCCCGGGAATTCGTTAGCATTA
GCCTTCCAAGATGTTTTGAGAAGAAAGCCATGCAAACTCTTCGCGTTGAT
ACACGGACAGTGAATCTCGCCTCTATGTGCAAGTCGTACTTCACCTTGGG
TGTTCGGCTTGCTAAACTACTAGTCGATGTGGCTTTGCCAGGGGCGCTTT
CCAGGGCGTTTGCGGCTCGCTGTTGGGGAATCACAGATTCTGCGGCCTTT
TCGGGTGACAAAGGGGCTCAGGCCATGAGAGGGTTCGATTGGCTTGAATG
TGAGCTCTTTCAAGAAGCACACGCGATGGCTGTCGCTACAAGGAGATGGA
AAGAACGGCGTGGGGATAGAATATCTGCATTGGAACCAATGCTTGGTAAA
AGGTCACGGGAAGAACTTGGCAGTCCTGTCACACCATCAACTCGTCCAAG
AACGAGTTAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:3429575..3430234+

>Gvermi12106.t1 ID=Gvermi12106.t1|Name=Gvermi12106.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=660bp|location=Sequence derived from alignment at ScGOVlb_3404:3429575..3430234+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGGATTACTTTTCAATCGATGATATTCTTGCTGGTGACAATCGCGT
CTTCTCAACATTCCGTGATGATGGATACAACATCGCGTACCTTGATCGCA
TGCGTGTTGCAGAATGGAATGCATCTCACCGAACCGCAGAGGAACTTGAC
AATAACCCCAACATTGACAAGGATATGCCAAAATGTATACAAGTAGCATT
GCCCTTTTGGTTAGCTGAGTCTCTAGCAGCCCGGGAATTCGTTAGCATTA
GCCTTCCAAGATGTTTTGAGAAGAAAGCCATGCAAACTCTTCGCGTTGAT
ACACGGACAGTGAATCTCGCCTCTATGTGCAAGTCGTACTTCACCTTGGG
TGTTCGGCTTGCTAAACTACTAGTCGATGTGGCTTTGCCAGGGGCGCTTT
CCAGGGCGTTTGCGGCTCGCTGTTGGGGAATCACAGATTCTGCGGCCTTT
TCGGGTGACAAAGGGGCTCAGGCCATGAGAGGGTTCGATTGGCTTGAATG
TGAGCTCTTTCAAGAAGCACACGCGATGGCTGTCGCTACAAGGAGATGGA
AAGAACGGCGTGGGGATAGAATATCTGCATTGGAACCAATGCTTGGTAAA
AGGTCACGGGAAGAACTTGGCAGTCCTGTCACACCATCAACTCGTCCAAG
AACGAGTTAG
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