Gvermi12105.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gvermi12105.t1
Unique Name	Gvermi12105.t1
Type	mRNA
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	310

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_3404	contig	ScGOVlb_3404:3428167..3429096 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	80637.XP_007772140.1
Max annot lvl	4751\|Fungi
Evalue	1.32e-07
EggNOG OGs	2E8MP@1\|root,2SF3D@2759\|Eukaryota,38JKA@33154\|Opisthokonta,3PMGD@4751\|Fungi,3V9KG@5204\|Basidiomycota,22CAR@155619\|Agaricomycetes

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12105	Gvermi12105	Gracilaria vermiculophylla HapMaleFtJ_2017 male	gene	ScGOVlb_3404 3428167..3429096 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12105.t1.start1	Gvermi12105.t1.start1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	start_codon	ScGOVlb_3404 3428167..3428169 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12105.t1.CDS1	Gvermi12105.t1.CDS1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	CDS	ScGOVlb_3404 3428167..3429096 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12105.t1.exon1	Gvermi12105.t1.exon1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	exon	ScGOVlb_3404 3428167..3429096 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12105.t1.stop1	Gvermi12105.t1.stop1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	stop_codon	ScGOVlb_3404 3429094..3429096 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gvermi12105.t1	Gvermi12105.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	polypeptide	ScGOVlb_3404 3428167..3429096 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at ScGOVlb_3404:3428167..3429096+
coding sequence from alignment at ScGOVlb_3404:3428167..3429096+

mRNA sequence

>Gvermi12105.t1 ID=Gvermi12105.t1|Name=Gvermi12105.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=310bp
MDTPTLSNLKSPDQPSDQPASPRQRTLRPIACRPIPPVAIIPVPYPDVVQ
PQASLSSKDVSPKPKDSKERKSRAGAPNYSAEDVSALLTFVEEIEPTGPS
NWAFVALKFSQWALDNERPHREPMSLRNKFDKLANSKIKAGDPTCPESVR
RAKIIARAIHNKYASMMMEHEGEQEAQNSDQKSKHESKDNTDKPEAPESD
VGDEEVIVTRAKKRKKGAHGAAVKLTSEEILVNYVGQMSRHIGSIAKTLT
TEISKTAEKDAAHLSKEDINEIVKREVRESMLVTNNILAKMNLMLENISA
KLNGSQSGV*

spliced messenger RNA

>Gvermi12105.t1 ID=Gvermi12105.t1|Name=Gvermi12105.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=930bp|location=Sequence derived from alignment at ScGOVlb_3404:3428167..3429096+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACACCCCCACTCTCTCTAATCTTAAGAGCCCCGACCAGCCTTCCGA
TCAACCAGCCAGTCCGCGACAGCGCACGTTGCGGCCCATAGCATGTCGTC
CCATACCGCCTGTTGCCATCATTCCGGTTCCTTACCCGGATGTCGTGCAG
CCCCAGGCCAGTCTTTCATCAAAAGATGTCAGTCCAAAGCCGAAGGACAG
CAAAGAAAGAAAGTCACGTGCGGGGGCCCCAAATTATTCGGCGGAAGACG
TTTCGGCGCTCCTTACTTTTGTCGAAGAGATCGAGCCTACCGGGCCTAGC
AACTGGGCGTTCGTGGCTTTAAAGTTTTCGCAGTGGGCATTGGACAACGA
GCGACCACACAGAGAGCCTATGTCTCTCCGTAATAAGTTTGATAAGTTGG
CAAATTCCAAAATTAAAGCGGGTGACCCAACTTGTCCAGAATCGGTTCGT
CGGGCCAAAATCATTGCGCGTGCCATTCACAATAAGTATGCTTCTATGAT
GATGGAACACGAAGGTGAACAAGAAGCACAGAACAGCGACCAAAAGTCCA
AACATGAAAGCAAAGACAACACAGACAAGCCCGAAGCCCCTGAGTCGGAT
GTAGGCGATGAGGAGGTGATAGTAACACGCGCAAAAAAGCGGAAGAAAGG
TGCACATGGAGCTGCCGTAAAACTGACAAGCGAGGAAATTTTGGTAAACT
ACGTTGGCCAAATGTCACGACACATTGGCTCCATTGCGAAGACACTCACC
ACTGAGATATCTAAAACCGCTGAAAAGGATGCAGCCCATCTATCAAAGGA
GGATATCAATGAAATAGTCAAACGAGAAGTGCGGGAAAGTATGCTTGTCA
CGAATAACATTCTCGCCAAAATGAACCTTATGCTGGAGAATATAAGCGCT
AAACTCAACGGCTCGCAATCTGGTGTGTGA

protein sequence of Gvermi12105.t1

>Gvermi12105.t1 ID=Gvermi12105.t1|Name=Gvermi12105.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=310bp
MDTPTLSNLKSPDQPSDQPASPRQRTLRPIACRPIPPVAIIPVPYPDVVQ
PQASLSSKDVSPKPKDSKERKSRAGAPNYSAEDVSALLTFVEEIEPTGPS
NWAFVALKFSQWALDNERPHREPMSLRNKFDKLANSKIKAGDPTCPESVR
RAKIIARAIHNKYASMMMEHEGEQEAQNSDQKSKHESKDNTDKPEAPESD
VGDEEVIVTRAKKRKKGAHGAAVKLTSEEILVNYVGQMSRHIGSIAKTLT
TEISKTAEKDAAHLSKEDINEIVKREVRESMLVTNNILAKMNLMLENISA
KLNGSQSGV*

mRNA from alignment at ScGOVlb_3404:3428167..3429096+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gvermi12105.t1 ID=Gvermi12105.t1|Name=Gvermi12105.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=930bp|location=Sequence derived from alignment at ScGOVlb_3404:3428167..3429096+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACACCCCCACTCTCTCTAATCTTAAGAGCCCCGACCAGCCTTCCGA
TCAACCAGCCAGTCCGCGACAGCGCACGTTGCGGCCCATAGCATGTCGTC
CCATACCGCCTGTTGCCATCATTCCGGTTCCTTACCCGGATGTCGTGCAG
CCCCAGGCCAGTCTTTCATCAAAAGATGTCAGTCCAAAGCCGAAGGACAG
CAAAGAAAGAAAGTCACGTGCGGGGGCCCCAAATTATTCGGCGGAAGACG
TTTCGGCGCTCCTTACTTTTGTCGAAGAGATCGAGCCTACCGGGCCTAGC
AACTGGGCGTTCGTGGCTTTAAAGTTTTCGCAGTGGGCATTGGACAACGA
GCGACCACACAGAGAGCCTATGTCTCTCCGTAATAAGTTTGATAAGTTGG
CAAATTCCAAAATTAAAGCGGGTGACCCAACTTGTCCAGAATCGGTTCGT
CGGGCCAAAATCATTGCGCGTGCCATTCACAATAAGTATGCTTCTATGAT
GATGGAACACGAAGGTGAACAAGAAGCACAGAACAGCGACCAAAAGTCCA
AACATGAAAGCAAAGACAACACAGACAAGCCCGAAGCCCCTGAGTCGGAT
GTAGGCGATGAGGAGGTGATAGTAACACGCGCAAAAAAGCGGAAGAAAGG
TGCACATGGAGCTGCCGTAAAACTGACAAGCGAGGAAATTTTGGTAAACT
ACGTTGGCCAAATGTCACGACACATTGGCTCCATTGCGAAGACACTCACC
ACTGAGATATCTAAAACCGCTGAAAAGGATGCAGCCCATCTATCAAAGGA
GGATATCAATGAAATAGTCAAACGAGAAGTGCGGGAAAGTATGCTTGTCA
CGAATAACATTCTCGCCAAAATGAACCTTATGCTGGAGAATATAAGCGCT
AAACTCAACGGCTCGCAATCTGGTGTGTGA

Coding sequence (CDS) from alignment at ScGOVlb_3404:3428167..3429096+

>Gvermi12105.t1 ID=Gvermi12105.t1|Name=Gvermi12105.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=930bp|location=Sequence derived from alignment at ScGOVlb_3404:3428167..3429096+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGACACCCCCACTCTCTCTAATCTTAAGAGCCCCGACCAGCCTTCCGA
TCAACCAGCCAGTCCGCGACAGCGCACGTTGCGGCCCATAGCATGTCGTC
CCATACCGCCTGTTGCCATCATTCCGGTTCCTTACCCGGATGTCGTGCAG
CCCCAGGCCAGTCTTTCATCAAAAGATGTCAGTCCAAAGCCGAAGGACAG
CAAAGAAAGAAAGTCACGTGCGGGGGCCCCAAATTATTCGGCGGAAGACG
TTTCGGCGCTCCTTACTTTTGTCGAAGAGATCGAGCCTACCGGGCCTAGC
AACTGGGCGTTCGTGGCTTTAAAGTTTTCGCAGTGGGCATTGGACAACGA
GCGACCACACAGAGAGCCTATGTCTCTCCGTAATAAGTTTGATAAGTTGG
CAAATTCCAAAATTAAAGCGGGTGACCCAACTTGTCCAGAATCGGTTCGT
CGGGCCAAAATCATTGCGCGTGCCATTCACAATAAGTATGCTTCTATGAT
GATGGAACACGAAGGTGAACAAGAAGCACAGAACAGCGACCAAAAGTCCA
AACATGAAAGCAAAGACAACACAGACAAGCCCGAAGCCCCTGAGTCGGAT
GTAGGCGATGAGGAGGTGATAGTAACACGCGCAAAAAAGCGGAAGAAAGG
TGCACATGGAGCTGCCGTAAAACTGACAAGCGAGGAAATTTTGGTAAACT
ACGTTGGCCAAATGTCACGACACATTGGCTCCATTGCGAAGACACTCACC
ACTGAGATATCTAAAACCGCTGAAAAGGATGCAGCCCATCTATCAAAGGA
GGATATCAATGAAATAGTCAAACGAGAAGTGCGGGAAAGTATGCTTGTCA
CGAATAACATTCTCGCCAAAATGAACCTTATGCTGGAGAATATAAGCGCT
AAACTCAACGGCTCGCAATCTGGTGTGTGA