Gvermi12103.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12103.t1
Unique NameGvermi12103.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length402
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3418836..3420041 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705069.1
PFAMsDnaJ,DnaJ_C,DnaJ_CXXCXGXG
Max annot lvl2759|Eukaryota
KEGG koko:K03686
GOsGO:0000122,GO:0001671,GO:0003674,GO:0003712,GO:0003714,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006355,GO:0006357,GO:0006457,GO:0006458,GO:0006950,GO:0006986,GO:0008047,GO:0008150,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0019219,GO:0019222,GO:0019899,GO:0030234,GO:0030544,GO:0031072,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032781,GO:0033554,GO:0035966,GO:0042221,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043462,GO:0043618,GO:0043620,GO:0044087,GO:0044093,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0048583,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051087,GO:0051117,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051336,GO:0051345,GO:0051716,GO:0060255,GO:0060589,GO:0060590,GO:0061077,GO:0065007,GO:0065009,GO:0070013,GO:0080090,GO:0080134,GO:0080135,GO:0090083,GO:0090084,GO:0097201,GO:0098772,GO:0140110,GO:1900034,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
Evalue6.91e-89
EggNOG OGsCOG0484@1|root,KOG0715@2759|Eukaryota
Descriptionheat shock protein binding
COG categoryO
BRITEko00000,ko03029,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12103Gvermi12103Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3418836..3420125 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12103.t1.stop1Gvermi12103.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3418836..3418838 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12103.t1.CDS1Gvermi12103.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3418836..3420041 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12103.t1.exon1Gvermi12103.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3418836..3420041 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12103.t1.start1Gvermi12103.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3420039..3420041 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12103.t1Gvermi12103.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3418836..3420041 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12103.t1 ID=Gvermi12103.t1|Name=Gvermi12103.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=402bp
LRALSGSASSASQRASADYYDLLGVSRDASPSEIKKAYYRLAKNHHPDTS
NGDRDTFAQVNHAYQTLSDKNKRRIYDRFGEEGVRAADQGADPAAAAAGA
TGQYATPDIDEVLREFGQFFTGRQVQRPAVDDPLPGDDKHAVVTLSLKEA
AFGVSKQVRTHSVDTCHQCAGSGKTASTSITRCSQCSGEGRVRTTAGMFQ
SVIMSCHRCNGTGDIMRDPCSTCDGDGVVGAFKDASVSFPPGCDTGMVLR
VPGAGATGIRRGPPGDLFIQVKVKEDDYFHRSGKDLHVVAPITFAQAALG
GTVEVRTLDGTESVSVRPGTQPDDTYVLHGRAMRGVNSPRRGNQVVHFKI
VVPEDLTTRQKQLITELLEEDGGKITKPEDCAPQSLLQRFQRFLRRTISP
S*
back to top

spliced messenger RNA

>Gvermi12103.t1 ID=Gvermi12103.t1|Name=Gvermi12103.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1206bp|location=Sequence derived from alignment at ScGOVlb_3404:3418836..3420041- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGCGAGCGCTCTCCGGCTCTGCAAGCTCCGCCTCCCAACGCGCATCCGC
CGATTACTACGACCTACTAGGCGTCTCGCGCGACGCCTCTCCGTCAGAGA
TCAAGAAGGCCTACTATCGCTTGGCTAAGAATCATCACCCTGATACGTCC
AACGGCGACCGCGACACATTCGCCCAGGTGAACCACGCGTACCAGACCCT
TTCTGACAAGAACAAGCGTCGCATCTACGACCGTTTTGGGGAAGAAGGCG
TCCGTGCCGCTGACCAGGGCGCCGATCCTGCTGCTGCGGCAGCTGGCGCC
ACTGGTCAGTATGCCACACCTGATATCGACGAAGTTCTGCGCGAATTTGG
CCAGTTCTTTACAGGGCGGCAAGTTCAGCGCCCCGCCGTTGACGATCCTC
TGCCTGGCGATGACAAGCATGCAGTCGTCACGCTCTCATTGAAGGAAGCC
GCCTTTGGTGTCAGCAAGCAGGTGCGAACCCACTCTGTTGATACGTGCCA
TCAGTGTGCTGGTTCGGGCAAGACCGCATCAACGAGTATAACTCGTTGCT
CGCAGTGCTCCGGCGAAGGGCGCGTGCGCACAACCGCTGGCATGTTCCAA
AGTGTTATCATGTCATGCCATCGTTGTAACGGAACAGGCGACATCATGCG
TGACCCTTGCTCTACATGTGATGGCGATGGCGTCGTAGGTGCTTTCAAGG
ATGCGTCTGTCTCTTTCCCGCCCGGGTGCGATACTGGCATGGTGCTTCGC
GTTCCGGGCGCTGGAGCCACTGGCATCAGGAGGGGGCCCCCGGGCGACCT
CTTTATTCAGGTCAAAGTTAAAGAAGACGACTATTTCCATCGGAGCGGTA
AGGATTTACACGTCGTTGCTCCTATTACTTTCGCGCAGGCCGCTCTGGGC
GGCACCGTCGAAGTGCGAACACTAGATGGTACAGAGAGTGTATCGGTACG
ACCAGGCACGCAACCTGATGACACGTACGTCCTACACGGCCGTGCAATGC
GCGGTGTCAACAGCCCGCGCCGTGGGAACCAAGTCGTTCATTTCAAGATT
GTTGTGCCTGAAGATCTCACCACACGCCAAAAGCAACTCATCACAGAACT
TCTAGAAGAGGATGGGGGGAAAATAACAAAACCAGAAGATTGCGCGCCCC
AATCTTTACTCCAACGTTTTCAACGTTTCTTGCGAAGAACAATATCACCG
AGTTAG
back to top

protein sequence of Gvermi12103.t1

>Gvermi12103.t1 ID=Gvermi12103.t1|Name=Gvermi12103.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=402bp
LRALSGSASSASQRASADYYDLLGVSRDASPSEIKKAYYRLAKNHHPDTS
NGDRDTFAQVNHAYQTLSDKNKRRIYDRFGEEGVRAADQGADPAAAAAGA
TGQYATPDIDEVLREFGQFFTGRQVQRPAVDDPLPGDDKHAVVTLSLKEA
AFGVSKQVRTHSVDTCHQCAGSGKTASTSITRCSQCSGEGRVRTTAGMFQ
SVIMSCHRCNGTGDIMRDPCSTCDGDGVVGAFKDASVSFPPGCDTGMVLR
VPGAGATGIRRGPPGDLFIQVKVKEDDYFHRSGKDLHVVAPITFAQAALG
GTVEVRTLDGTESVSVRPGTQPDDTYVLHGRAMRGVNSPRRGNQVVHFKI
VVPEDLTTRQKQLITELLEEDGGKITKPEDCAPQSLLQRFQRFLRRTISP
S*
back to top

mRNA from alignment at ScGOVlb_3404:3418836..3420041-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12103.t1 ID=Gvermi12103.t1|Name=Gvermi12103.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1206bp|location=Sequence derived from alignment at ScGOVlb_3404:3418836..3420041- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGCGAGCGCTCTCCGGCTCTGCAAGCTCCGCCTCCCAACGCGCATCCGC
CGATTACTACGACCTACTAGGCGTCTCGCGCGACGCCTCTCCGTCAGAGA
TCAAGAAGGCCTACTATCGCTTGGCTAAGAATCATCACCCTGATACGTCC
AACGGCGACCGCGACACATTCGCCCAGGTGAACCACGCGTACCAGACCCT
TTCTGACAAGAACAAGCGTCGCATCTACGACCGTTTTGGGGAAGAAGGCG
TCCGTGCCGCTGACCAGGGCGCCGATCCTGCTGCTGCGGCAGCTGGCGCC
ACTGGTCAGTATGCCACACCTGATATCGACGAAGTTCTGCGCGAATTTGG
CCAGTTCTTTACAGGGCGGCAAGTTCAGCGCCCCGCCGTTGACGATCCTC
TGCCTGGCGATGACAAGCATGCAGTCGTCACGCTCTCATTGAAGGAAGCC
GCCTTTGGTGTCAGCAAGCAGGTGCGAACCCACTCTGTTGATACGTGCCA
TCAGTGTGCTGGTTCGGGCAAGACCGCATCAACGAGTATAACTCGTTGCT
CGCAGTGCTCCGGCGAAGGGCGCGTGCGCACAACCGCTGGCATGTTCCAA
AGTGTTATCATGTCATGCCATCGTTGTAACGGAACAGGCGACATCATGCG
TGACCCTTGCTCTACATGTGATGGCGATGGCGTCGTAGGTGCTTTCAAGG
ATGCGTCTGTCTCTTTCCCGCCCGGGTGCGATACTGGCATGGTGCTTCGC
GTTCCGGGCGCTGGAGCCACTGGCATCAGGAGGGGGCCCCCGGGCGACCT
CTTTATTCAGGTCAAAGTTAAAGAAGACGACTATTTCCATCGGAGCGGTA
AGGATTTACACGTCGTTGCTCCTATTACTTTCGCGCAGGCCGCTCTGGGC
GGCACCGTCGAAGTGCGAACACTAGATGGTACAGAGAGTGTATCGGTACG
ACCAGGCACGCAACCTGATGACACGTACGTCCTACACGGCCGTGCAATGC
GCGGTGTCAACAGCCCGCGCCGTGGGAACCAAGTCGTTCATTTCAAGATT
GTTGTGCCTGAAGATCTCACCACACGCCAAAAGCAACTCATCACAGAACT
TCTAGAAGAGGATGGGGGGAAAATAACAAAACCAGAAGATTGCGCGCCCC
AATCTTTACTCCAACGTTTTCAACGTTTCTTGCGAAGAACAATATCACCG
AGTTAG
back to top

Coding sequence (CDS) from alignment at ScGOVlb_3404:3418836..3420041-

>Gvermi12103.t1 ID=Gvermi12103.t1|Name=Gvermi12103.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1206bp|location=Sequence derived from alignment at ScGOVlb_3404:3418836..3420041- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGCGAGCGCTCTCCGGCTCTGCAAGCTCCGCCTCCCAACGCGCATCCGC
CGATTACTACGACCTACTAGGCGTCTCGCGCGACGCCTCTCCGTCAGAGA
TCAAGAAGGCCTACTATCGCTTGGCTAAGAATCATCACCCTGATACGTCC
AACGGCGACCGCGACACATTCGCCCAGGTGAACCACGCGTACCAGACCCT
TTCTGACAAGAACAAGCGTCGCATCTACGACCGTTTTGGGGAAGAAGGCG
TCCGTGCCGCTGACCAGGGCGCCGATCCTGCTGCTGCGGCAGCTGGCGCC
ACTGGTCAGTATGCCACACCTGATATCGACGAAGTTCTGCGCGAATTTGG
CCAGTTCTTTACAGGGCGGCAAGTTCAGCGCCCCGCCGTTGACGATCCTC
TGCCTGGCGATGACAAGCATGCAGTCGTCACGCTCTCATTGAAGGAAGCC
GCCTTTGGTGTCAGCAAGCAGGTGCGAACCCACTCTGTTGATACGTGCCA
TCAGTGTGCTGGTTCGGGCAAGACCGCATCAACGAGTATAACTCGTTGCT
CGCAGTGCTCCGGCGAAGGGCGCGTGCGCACAACCGCTGGCATGTTCCAA
AGTGTTATCATGTCATGCCATCGTTGTAACGGAACAGGCGACATCATGCG
TGACCCTTGCTCTACATGTGATGGCGATGGCGTCGTAGGTGCTTTCAAGG
ATGCGTCTGTCTCTTTCCCGCCCGGGTGCGATACTGGCATGGTGCTTCGC
GTTCCGGGCGCTGGAGCCACTGGCATCAGGAGGGGGCCCCCGGGCGACCT
CTTTATTCAGGTCAAAGTTAAAGAAGACGACTATTTCCATCGGAGCGGTA
AGGATTTACACGTCGTTGCTCCTATTACTTTCGCGCAGGCCGCTCTGGGC
GGCACCGTCGAAGTGCGAACACTAGATGGTACAGAGAGTGTATCGGTACG
ACCAGGCACGCAACCTGATGACACGTACGTCCTACACGGCCGTGCAATGC
GCGGTGTCAACAGCCCGCGCCGTGGGAACCAAGTCGTTCATTTCAAGATT
GTTGTGCCTGAAGATCTCACCACACGCCAAAAGCAACTCATCACAGAACT
TCTAGAAGAGGATGGGGGGAAAATAACAAAACCAGAAGATTGCGCGCCCC
AATCTTTACTCCAACGTTTTCAACGTTTCTTGCGAAGAACAATATCACCG
AGTTAG
back to top