Gvermi12100.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12100.t1
Unique NameGvermi12100.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length381
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3408304..3409554 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12100Gvermi12100Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3408304..3409554 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12100.t1Gvermi12100.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3408304..3409554 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12100.t1.start1Gvermi12100.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3408304..3408306 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12100.t1.CDS1Gvermi12100.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3408304..3408532 +
Gvermi12100.t1.CDS2Gvermi12100.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3408641..3409554 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12100.t1.exon1Gvermi12100.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3408304..3408532 +
Gvermi12100.t1.exon2Gvermi12100.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3408641..3409554 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12100.t1.intron1Gvermi12100.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 3408533..3408640 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12100.t1.stop1Gvermi12100.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3409552..3409554 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12100.t1 ID=Gvermi12100.t1|Name=Gvermi12100.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=381bp
MNAPPPRSTSLAPAQHTRSPPSRSYAAPPFTAPPFAQLQHDATPTQQQTH
QLPTSQPHHSASQLHLPGVQTYIHNYHYYNFNADCTINQSLGDGQNFHII
SSQQRTSNRQPPSQVNPVAPVAPVHPPLRTPQAPPQQRHYAPHQPLPPPP
PLTSLPSVRHLPRLSPLTDRACKRSRLSARTMPSSTSSGSDAMEDAFPLL
ATRSYGSTSADVDESSLNDWEAVVEMYLHGTGAPDGVPLREICKGDGRRV
HDRKLLEKRRTIGKTYELLGAPRFEAAIGYRWENGLRRKQKMYNVISRCR
IVNAMRKAGEPIPDDFVVLTELIDERLREKERAKEERDAKRNAEQARLNA
ITGTTRIAVMPGAARDAPGAAAMVRRADAS*
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spliced messenger RNA

>Gvermi12100.t1 ID=Gvermi12100.t1|Name=Gvermi12100.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1143bp|location=Sequence derived from alignment at ScGOVlb_3404:3408304..3409554+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
atgaacgcgccgccgcctcgttccacctccctcgcccccgcgcagcacac
ccgctctccgccttcccgttcctacgccgcaccgcccttcaccgcaccgc
ccttcgcacagctgcaacatgacgccaccccgacgcagcagcaaacacac
cagctgcccacctcgcagccgcaccactctgcctcccagctgcatctgcc
aggcgtgcagacctacattcacaattatcattactacaacttcaatgccg
attgcaccatcaatcagtcgttgggcgacgggcagaactttcacatcatt
tcttcgcagcagcgcacgtccaaccggcagccgccgtcgcaggtgaaccc
cgtggcgccggtggcgcccgttcatccgccgctgcgcacgccgcaagcgc
cgccgcagcagcgtcactacgcgccgcaccagccgttgccgccgccgccg
ccgctcacgtcgctgccgtccgtgcgccacctgccgcgcctgtcgccgct
caccgatcgcgcgtgcaagcgcagccgcctgtcggcgcgcaccatgccgt
cttccacctcgagcgGATCGGATGCGATGGAAGACGCGTTCCCGCTGCTG
GCCACGCGCAGCTACGGATCCACCTCTGCTGATGTTGACGAGTCGTCACT
CAACGACTGggaggcggtggtggaaatgtacctgcacggcacgggtgcgc
cggacggcgtgcccttgcgcgagatttgtaagggcgacggccgccgcgtg
cacgaccgcaagctgctggagaagcggcgcacgattggcaagacgtacga
gctgctgggcgcgccgcgcttcgaggcggccatcggctaccgctgggaga
atgggctgcggcgcaagcagaagatgtacaacgtgatcagccgctgccgc
atcgtcaacgccatgcgcaaggcgggcgagcccattccggacgattttgt
cgtgctgacggagctcatcgacgagcggttgcgcgagaaggagcgcgcca
aggaggagcgcgacgccaagcgcaacgcggagcaggcgcgcctcaacgcc
atcacgggcaccacgcgcatcgccgtgatgccgggcgcggcgcgcgacgc
gccgggcgcggcggcgatggtgcgtcgcgctgacgcgtcctga
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protein sequence of Gvermi12100.t1

>Gvermi12100.t1 ID=Gvermi12100.t1|Name=Gvermi12100.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=381bp
MNAPPPRSTSLAPAQHTRSPPSRSYAAPPFTAPPFAQLQHDATPTQQQTH
QLPTSQPHHSASQLHLPGVQTYIHNYHYYNFNADCTINQSLGDGQNFHII
SSQQRTSNRQPPSQVNPVAPVAPVHPPLRTPQAPPQQRHYAPHQPLPPPP
PLTSLPSVRHLPRLSPLTDRACKRSRLSARTMPSSTSSGSDAMEDAFPLL
ATRSYGSTSADVDESSLNDWEAVVEMYLHGTGAPDGVPLREICKGDGRRV
HDRKLLEKRRTIGKTYELLGAPRFEAAIGYRWENGLRRKQKMYNVISRCR
IVNAMRKAGEPIPDDFVVLTELIDERLREKERAKEERDAKRNAEQARLNA
ITGTTRIAVMPGAARDAPGAAAMVRRADAS*
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mRNA from alignment at ScGOVlb_3404:3408304..3409554+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12100.t1 ID=Gvermi12100.t1|Name=Gvermi12100.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1251bp|location=Sequence derived from alignment at ScGOVlb_3404:3408304..3409554+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
atgaacgcgccgccgcctcgttccacctccctcgcccccgcgcagcacac
ccgctctccgccttcccgttcctacgccgcaccgcccttcaccgcaccgc
ccttcgcacagctgcaacatgacgccaccccgacgcagcagcaaacacac
cagctgcccacctcgcagccgcaccactctgcctcccagctgcatctgcc
aggcgtgcagacctacattcacaattatcgtacgttgcgctgccacctct
ccggcctcacctttccgcctcacctctcccgtgagctctctgttgctgac
tgtcgcccgtccttgtcatcgccctttgcccgcacagattactacaactt
caatgccgattgcaccatcaatcagtcgttgggcgacgggcagaactttc
acatcatttcttcgcagcagcgcacgtccaaccggcagccgccgtcgcag
gtgaaccccgtggcgccggtggcgcccgttcatccgccgctgcgcacgcc
gcaagcgccgccgcagcagcgtcactacgcgccgcaccagccgttgccgc
cgccgccgccgctcacgtcgctgccgtccgtgcgccacctgccgcgcctg
tcgccgctcaccgatcgcgcgtgcaagcgcagccgcctgtcggcgcgcac
catgccgtcttccacctcgagcgGATCGGATGCGATGGAAGACGCGTTCC
CGCTGCTGGCCACGCGCAGCTACGGATCCACCTCTGCTGATGTTGACGAG
TCGTCACTCAACGACTGggaggcggtggtggaaatgtacctgcacggcac
gggtgcgccggacggcgtgcccttgcgcgagatttgtaagggcgacggcc
gccgcgtgcacgaccgcaagctgctggagaagcggcgcacgattggcaag
acgtacgagctgctgggcgcgccgcgcttcgaggcggccatcggctaccg
ctgggagaatgggctgcggcgcaagcagaagatgtacaacgtgatcagcc
gctgccgcatcgtcaacgccatgcgcaaggcgggcgagcccattccggac
gattttgtcgtgctgacggagctcatcgacgagcggttgcgcgagaagga
gcgcgccaaggaggagcgcgacgccaagcgcaacgcggagcaggcgcgcc
tcaacgccatcacgggcaccacgcgcatcgccgtgatgccgggcgcggcg
cgcgacgcgccgggcgcggcggcgatggtgcgtcgcgctgacgcgtcctg
a
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Coding sequence (CDS) from alignment at ScGOVlb_3404:3408304..3409554+

>Gvermi12100.t1 ID=Gvermi12100.t1|Name=Gvermi12100.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1143bp|location=Sequence derived from alignment at ScGOVlb_3404:3408304..3409554+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
atgaacgcgccgccgcctcgttccacctccctcgcccccgcgcagcacac
ccgctctccgccttcccgttcctacgccgcaccgcccttcaccgcaccgc
ccttcgcacagctgcaacatgacgccaccccgacgcagcagcaaacacac
cagctgcccacctcgcagccgcaccactctgcctcccagctgcatctgcc
aggcgtgcagacctacattcacaattatcattactacaacttcaatgccg
attgcaccatcaatcagtcgttgggcgacgggcagaactttcacatcatt
tcttcgcagcagcgcacgtccaaccggcagccgccgtcgcaggtgaaccc
cgtggcgccggtggcgcccgttcatccgccgctgcgcacgccgcaagcgc
cgccgcagcagcgtcactacgcgccgcaccagccgttgccgccgccgccg
ccgctcacgtcgctgccgtccgtgcgccacctgccgcgcctgtcgccgct
caccgatcgcgcgtgcaagcgcagccgcctgtcggcgcgcaccatgccgt
cttccacctcgagcgGATCGGATGCGATGGAAGACGCGTTCCCGCTGCTG
GCCACGCGCAGCTACGGATCCACCTCTGCTGATGTTGACGAGTCGTCACT
CAACGACTGggaggcggtggtggaaatgtacctgcacggcacgggtgcgc
cggacggcgtgcccttgcgcgagatttgtaagggcgacggccgccgcgtg
cacgaccgcaagctgctggagaagcggcgcacgattggcaagacgtacga
gctgctgggcgcgccgcgcttcgaggcggccatcggctaccgctgggaga
atgggctgcggcgcaagcagaagatgtacaacgtgatcagccgctgccgc
atcgtcaacgccatgcgcaaggcgggcgagcccattccggacgattttgt
cgtgctgacggagctcatcgacgagcggttgcgcgagaaggagcgcgcca
aggaggagcgcgacgccaagcgcaacgcggagcaggcgcgcctcaacgcc
atcacgggcaccacgcgcatcgccgtgatgccgggcgcggcgcgcgacgc
gccgggcgcggcggcgatggtgcgtcgcgctgacgcgtcctga
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