Gvermi12099.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi12099.t1
Unique NameGvermi12099.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length325
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:3356687..3360248 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12099Gvermi12099Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 3356687..3360248 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12099.t1.stop1Gvermi12099.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 3356687..3356689 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12099.t1.CDS1Gvermi12099.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3356687..3357064 -
Gvermi12099.t1.CDS2Gvermi12099.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3357128..3357254 -
Gvermi12099.t1.CDS3Gvermi12099.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3357339..3357439 -
Gvermi12099.t1.CDS4Gvermi12099.t1.CDS4Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3357506..3357585 -
Gvermi12099.t1.CDS5Gvermi12099.t1.CDS5Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3357664..3357756 -
Gvermi12099.t1.CDS6Gvermi12099.t1.CDS6Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 3360053..3360248 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12099.t1.exon1Gvermi12099.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3356687..3357064 -
Gvermi12099.t1.exon2Gvermi12099.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3357128..3357254 -
Gvermi12099.t1.exon3Gvermi12099.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3357339..3357439 -
Gvermi12099.t1.exon4Gvermi12099.t1.exon4Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3357506..3357585 -
Gvermi12099.t1.exon5Gvermi12099.t1.exon5Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3357664..3357756 -
Gvermi12099.t1.exon6Gvermi12099.t1.exon6Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 3360053..3360248 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12099.t1.intron1Gvermi12099.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 3357065..3357127 -
Gvermi12099.t1.intron2Gvermi12099.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 3357255..3357338 -
Gvermi12099.t1.intron3Gvermi12099.t1.intron3Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 3357440..3357505 -
Gvermi12099.t1.intron4Gvermi12099.t1.intron4Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 3357586..3357663 -
Gvermi12099.t1.intron5Gvermi12099.t1.intron5Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 3357757..3360052 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12099.t1.start1Gvermi12099.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 3360246..3360248 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi12099.t1Gvermi12099.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 3356687..3360248 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi12099.t1 ID=Gvermi12099.t1|Name=Gvermi12099.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=325bp
MLRISQLEESNQRLRKLTPLKENGVDADSEVVQLPTSNEVWDDFATALSN
LKERHEAILRVLEKRDNRQIMDTDYISSPWITMDSTRMQEQLRSLLRILR
FIKKVPYCMNEILAEWTNSCDALRTDIDEVISTISCFRTVLEESMGESEE
MPPLPTLQPEAELLPKSVGAIGKTSDMEINSDKQENRKHIIEAVRAEPDI
RITRGSQDVKHSTLFIESFWKWYSSHRRQGSSCLPLDDLVRDVSNCKYGR
GTPLIIDKLGLLEVPECTDIPTGLEKLRSLLCFMRELVQRHLHREELLVK
VVKALHEDKSYLKNLLAMSTDPSE*
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spliced messenger RNA

>Gvermi12099.t1 ID=Gvermi12099.t1|Name=Gvermi12099.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=975bp|location=Sequence derived from alignment at ScGOVlb_3404:3356687..3360248- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTCGTATTTCTCAATTGGAAGAATCAAATCAAAGGCTGCGAAAGCT
CACCCCTTTGAAAGAGAATGGCGTTGATGCCGATTCCGAAGTAGTACAGC
TGCCGACATCCAATGAGGTTTGGGATGATTTCGCAACTGCTCTCAGCAAC
TTGAAAGAGAGGCATGAGGCCATCCTTCGTGTCTTGGAAAAGAGGGATAA
TCGTCAGATTATGGATACCGACTACATATCATCGCCTTGGATTACGATGG
ACTCTACCAGAATGCAGGAGCAGTTACGCAGTTTGCTTCGTATTCTAAGA
TTTATCAAGAAGGTTCCGTACTGCATGAATGAAATCTTGGCGGAGTGGAC
CAACTCTTGCGATGCACTCAGAACCGACATCGACGAAGTGATTAGTACAA
TCTCCTGCTTCAGAACTGTTTTGGAGGAGAGCATGGGCGAATCCGAAGAA
ATGCCACCGTTGCCCACTTTACAACCGGAAGCTGAGTTGCTGCCCAAATC
TGTGGGCGCTATTGGCAAAACAAGTGACATGGAAATCAACAGCGACAAAC
AAGAAAACCGGAAGCACATAATCGAAGCAGTACGGGCTGAACCCGATATT
CGTATTACCAGGGGTAGCCAGGATGTGAAGCATTCAACATTATTTATCGA
ATCGTTTTGGAAATGGTATAGCAGTCATCGACGTCAAGGTTCTAGCTGTT
TGCCCTTGGATGATCTGGTTAGGGATGTTTCCAACTGTAAATACGGTCGT
GGAACCCCCTTGATAATTGACAAGCTTGGCCTACTGGAGGTTCCAGAATG
CACTGATATACCAACTGGCCTTGAAAAACTGAGGTCACTTCTTTGTTTCA
TGCGTGAACTCGTCCAAAGGCATTTGCACCGGGAAGAGCTGCTTGTGAAA
GTAGTCAAAGCTCTACATGAAGACAAGTCTTATCTCAAGAACCTGCTAGC
TATGTCTACGGATCCATCAGAGTAA
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protein sequence of Gvermi12099.t1

>Gvermi12099.t1 ID=Gvermi12099.t1|Name=Gvermi12099.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=325bp
MLRISQLEESNQRLRKLTPLKENGVDADSEVVQLPTSNEVWDDFATALSN
LKERHEAILRVLEKRDNRQIMDTDYISSPWITMDSTRMQEQLRSLLRILR
FIKKVPYCMNEILAEWTNSCDALRTDIDEVISTISCFRTVLEESMGESEE
MPPLPTLQPEAELLPKSVGAIGKTSDMEINSDKQENRKHIIEAVRAEPDI
RITRGSQDVKHSTLFIESFWKWYSSHRRQGSSCLPLDDLVRDVSNCKYGR
GTPLIIDKLGLLEVPECTDIPTGLEKLRSLLCFMRELVQRHLHREELLVK
VVKALHEDKSYLKNLLAMSTDPSE*
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mRNA from alignment at ScGOVlb_3404:3356687..3360248-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi12099.t1 ID=Gvermi12099.t1|Name=Gvermi12099.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=3562bp|location=Sequence derived from alignment at ScGOVlb_3404:3356687..3360248- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTTCGTATTTCTCAATTGGAAGAATCAAATCAAAGGCTGCGAAAGCT
CACCCCTTTGAAAGAGAATGGCGTTGATGCCGATTCCGAAGTAGTACAGC
TGCCGACATCCAATGAGGTTTGGGATGATTTCGCAACTGCTCTCAGCAAC
TTGAAAGAGAGGCATGAGGCCATCCTTCGTGTCTTGGAAAAGAGGGGTAC
AACCTTACTAGACCAACTCAAACCTTTCACTAGCAGAAATAACGAACCGC
ACAAAACAAAGTAAAACGAGGCCACCATCTTGTTTTTCTGTGCTTGAATC
GACCACCCGTCGCTTACGTCATCGATCCAGACACAAACGGCATTTCTCGT
GCACCACACTTCGACTTCCAACTTTTGACTAAGATCATCTATGCGCTGCT
GCATCGACCTCTTATCTCGTGCCAGTGCTCTTAGCCTGAGTGCTAGGCGC
TCGCTCGAAGCCAAGTGATCGTTTGCGATCCTTTCGTGTTCATCGTAATT
AACGCCCGATATAAATAACGGCTGTTCTGCGACGGAACTTGCGAGAGGCA
GTTGATGATTTTCGATCGACCTTTCGGTCGATGGCACGGGACTGCCCATG
TCACTTTCAAAAAGTACTAGGGTCAGCGTACGACAAGCTTCAACAAGTCC
TCTCAGGTGTTCTGGGGAGCGTTCTTGGAAGCGTTTGGGAGTGCAATGTG
GCTCAGCAGGGATGGTAATGGGTTTCGAATAGTCTCTTCCTTTCCCCGTT
CCGCGGAATGTTGCGATGGCGTGTTTGACTCCTCCCGGAAAAGGGTAAAA
CGATAGTTGCTCTTGGGATATGTATAGAAATACCTTACGGTGGCGGTAGG
CGCTTTGAAACTTGGGACAGAGCTTCCCCCTTACAGGAAGGCAGTTGCGA
AGTTTTTTCTTCGGAAAGGTTTGTTGGCAAAATGTACAGTTGGCTGTTTT
GTCCATTGATTTGTAGTGACCGGAAGCATGCAGATAGGCAGGCAGTGTCT
ATAAACATAATTACCAGCAGAGCATGCCGAAGATTTCTCAGGACAGGGAA
ATTGCGTGCGTTGGCAACAGCTACCTTTCCTTCGAAGGTCGCAATCTTCG
TCACGCTGGCTTGAAGTAACGTGCTCCACTCTGTGTTAACATGAACGTCA
CAGCGTCGAGTGCCCAAATGTCACCTGGTCCCAGAACGTCCTGTATCGTT
GGCTTCACCCAGCTCCCTTCGCAGCAGCCCAAACTCACACAGTCGATTGA
AGAGTTTTTCAACGGCTTCAAACAGCTGGTTGTGCAGCACCAACTCGCTA
AGCCGGGCGGCATAAAGCGCGTGGCCAACGCCGGGTTTTGCGGGGACAGC
TTGTTGTGGTGAATCTCGACCGGGTGTTCGACTGGATGTTTATATTGTAG
TTGGTCCTGCCTGATAGAGGTTATAGCTGGGAAAGGGAAAGTTGAAGAAA
GGATGGGGGAATGAAAGGAAGTTCGCCAGCTCTGGCTCGGAGTTTACTTG
GAGGTGCTCAAGTCACAACTTATATAGTGCTACTTCGNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCACGCTCACCA
ACTCACACGTCACCACAAATTCACTCCAAGTCCTATGTCAGCAACCATAC
AGCTGTGTAAACCTGTTGACAGTGCATCAACTCCTCACCATAGTGCCCAA
GTACCACCAAGCTGACCTACATGTCCACGTGCATACCTGTGTACCCTGTG
CACACTGTACAACATGCCCAGTATGCTAGCTACACACGTGTAACCCGGAA
CAACCAATTAGCGCCATAACACTTGTACCAATCACAGTGCATATGAGCAT
TTGCAGTAGCCAACCAGAAGCCCGTTTCATGTTGAGTTTGCACACAGGCG
CATATGCGCTTTTCCAGCACCACCCTCCAAAACAGCCCATGCTCCGCAGC
ACTTTTTGTTTTCAGTGACAGTACAAGGTCAACATCCAACACTGCCGAGC
AGCTTGTGGGTGACACGGTGGTTACGGTTGTGCACGAACACGTTGCTCGG
GGCGGTTGGGAACGGACGAGCATTTCTGTCCGAGCACGACTTCACAACGA
CTCCAGCAGCAGTAGGCGCACTCAGAAATGACGCACTCACCAAAGACGCA
CTCACATCAGCAGCACGAACGACAGCAAGGGGACGAAGGCTAACGGTGAG
GAGCTCGCGCAGCGCAGGTGCGGGGTGTGCATCATGACGGCGGTGGCGTT
GGTGCGGTGTGCGCCATTTTGGCGAAAGGCGCACAATGACCGACCACGCG
GTGGTGCTTCTACAGCCACACTTACGTGCCCAAGAACGCGCGCGCGCTTA
TCGATATTGCGTTTCTCGTTGCGCGCGCCGGTGGCATATGAGCGCGGCGC
ACGACCGCTTCCATATGGCCCACATGCCCTTCTAAACGTTAGATAATCGT
CAGATTATGGATACCGACTACATATCATCGCCTTGGATTACGATGGACTC
TACCAGAATGCAGGAGCAGTTACGCAGTTTGCTTCGTAAGTTCTGTTCAA
TGTGTTTCGAAACCATCTATGTCAAAACGGAGACTGACGACGTTGGTTTT
TGCGAAACTGCAGGTATTCTAAGATTTATCAAGAAGGTTCCGTACTGCAT
GAATGAAATCTTGGCGGAGTGGACCAACTCTTGCGATGCACTCGTAAGTT
AAACACCCTTAAAGTTCATATCAAAGCATGTCACTGATCCATGTTTCTTT
CCTAAACAGAGAACCGACATCGACGAAGTGATTAGTACAATCTCCTGCTT
CAGAACTGTTTTGGAGGAGAGCATGGGCGAATCCGAAGAAATGCCACCGT
TGCCCACTTTGTAAGTGGGCGTATTATTGTTGTTGTCTTCAACGAAGATT
TCGTTGTAATCTGACTCTATATTTCTGGTATGAATTCTACCTAGACAACC
GGAAGCTGAGTTGCTGCCCAAATCTGTGGGCGCTATTGGCAAAACAAGTG
ACATGGAAATCAACAGCGACAAACAAGAAAACCGGAAGCACATAATCGAA
GCAGTACGGGCTGAACCCGATGTAGGTTTCGTAAACCGTAAGTTCTTTCC
ATGCTGAAACTGAACAATCACTAATCTGTTTCAGATTCGTATTACCAGGG
GTAGCCAGGATGTGAAGCATTCAACATTATTTATCGAATCGTTTTGGAAA
TGGTATAGCAGTCATCGACGTCAAGGTTCTAGCTGTTTGCCCTTGGATGA
TCTGGTTAGGGATGTTTCCAACTGTAAATACGGTCGTGGAACCCCCTTGA
TAATTGACAAGCTTGGCCTACTGGAGGTTCCAGAATGCACTGATATACCA
ACTGGCCTTGAAAAACTGAGGTCACTTCTTTGTTTCATGCGTGAACTCGT
CCAAAGGCATTTGCACCGGGAAGAGCTGCTTGTGAAAGTAGTCAAAGCTC
TACATGAAGACAAGTCTTATCTCAAGAACCTGCTAGCTATGTCTACGGAT
CCATCAGAGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:3356687..3360248-

>Gvermi12099.t1 ID=Gvermi12099.t1|Name=Gvermi12099.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=975bp|location=Sequence derived from alignment at ScGOVlb_3404:3356687..3360248- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTTCGTATTTCTCAATTGGAAGAATCAAATCAAAGGCTGCGAAAGCT
CACCCCTTTGAAAGAGAATGGCGTTGATGCCGATTCCGAAGTAGTACAGC
TGCCGACATCCAATGAGGTTTGGGATGATTTCGCAACTGCTCTCAGCAAC
TTGAAAGAGAGGCATGAGGCCATCCTTCGTGTCTTGGAAAAGAGGGATAA
TCGTCAGATTATGGATACCGACTACATATCATCGCCTTGGATTACGATGG
ACTCTACCAGAATGCAGGAGCAGTTACGCAGTTTGCTTCGTATTCTAAGA
TTTATCAAGAAGGTTCCGTACTGCATGAATGAAATCTTGGCGGAGTGGAC
CAACTCTTGCGATGCACTCAGAACCGACATCGACGAAGTGATTAGTACAA
TCTCCTGCTTCAGAACTGTTTTGGAGGAGAGCATGGGCGAATCCGAAGAA
ATGCCACCGTTGCCCACTTTACAACCGGAAGCTGAGTTGCTGCCCAAATC
TGTGGGCGCTATTGGCAAAACAAGTGACATGGAAATCAACAGCGACAAAC
AAGAAAACCGGAAGCACATAATCGAAGCAGTACGGGCTGAACCCGATATT
CGTATTACCAGGGGTAGCCAGGATGTGAAGCATTCAACATTATTTATCGA
ATCGTTTTGGAAATGGTATAGCAGTCATCGACGTCAAGGTTCTAGCTGTT
TGCCCTTGGATGATCTGGTTAGGGATGTTTCCAACTGTAAATACGGTCGT
GGAACCCCCTTGATAATTGACAAGCTTGGCCTACTGGAGGTTCCAGAATG
CACTGATATACCAACTGGCCTTGAAAAACTGAGGTCACTTCTTTGTTTCA
TGCGTGAACTCGTCCAAAGGCATTTGCACCGGGAAGAGCTGCTTGTGAAA
GTAGTCAAAGCTCTACATGAAGACAAGTCTTATCTCAAGAACCTGCTAGC
TATGTCTACGGATCCATCAGAGTAA
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