Gvermi11535.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11535.t1
Unique NameGvermi11535.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length357
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:756796..757950 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706288.1
PFAMsWD40
Max annot lvl2759|Eukaryota
KEGG koko:K14004
KEGG Pathwayko03013,ko04141,ko04150,map03013,map04141,map04150
KEGG ModuleM00404,M00427
GOsGO:0000323,GO:0002376,GO:0002474,GO:0002478,GO:0002495,GO:0002504,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005654,GO:0005730,GO:0005737,GO:0005764,GO:0005765,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0005798,GO:0005829,GO:0006810,GO:0006886,GO:0006888,GO:0006900,GO:0006901,GO:0006903,GO:0006996,GO:0008104,GO:0008150,GO:0009966,GO:0009967,GO:0009987,GO:0010646,GO:0010647,GO:0012505,GO:0012506,GO:0012507,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0019882,GO:0019884,GO:0019886,GO:0022607,GO:0023051,GO:0023056,GO:0030117,GO:0030120,GO:0030127,GO:0030133,GO:0030134,GO:0030135,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0031080,GO:0031090,GO:0031410,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0031982,GO:0031984,GO:0032006,GO:0032008,GO:0032991,GO:0033036,GO:0034613,GO:0034622,GO:0035459,GO:0035859,GO:0042175,GO:0042802,GO:0042886,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048002,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048475,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051668,GO:0061024,GO:0061700,GO:0065003,GO:0065007,GO:0070013,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0090110,GO:0090114,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:0098827,GO:0098852,GO:1902531,GO:1902533
Evalue4.92e-110
EggNOG OGsKOG1332@1|root,KOG1332@2759|Eukaryota
Descriptionpositive regulation of TORC1 signaling
COG categoryU
BRITEko00000,ko00001,ko00002,ko03019,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11535Gvermi11535Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 756796..757950 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11535.t1Gvermi11535.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 756796..757950 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11535.t1.start1Gvermi11535.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 756796..756798 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11535.t1.CDS1Gvermi11535.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 756796..756885 +
Gvermi11535.t1.CDS2Gvermi11535.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 756970..757950 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11535.t1.exon1Gvermi11535.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 756796..756885 +
Gvermi11535.t1.exon2Gvermi11535.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 756970..757950 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11535.t1.intron1Gvermi11535.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 756886..756969 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11535.t1.stop1Gvermi11535.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 757948..757950 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11535.t1 ID=Gvermi11535.t1|Name=Gvermi11535.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=357bp
MAMPPAAMPQPAMAPPAPVGAAAAPITQQTTPPKSVVHTAHSDMIHDAQL
DFYGRRLATCSSDRTIKIFQVERSGAHRHEATLEGHEGAVWQVAWAHPTR
HGRPLLASASHDGRVIVWIEDAPTMWRQYYEYAWHASSVNAVAFAPCEFG
LVFACASSDGFVSVCSRLQDGTWDERRVSESVGGHAHTHALGANSVSWAP
AVAAGGLWMAERAAPPAMRMVTGGCDQMVKVWTFDGESNNWVLEGKALKA
HREMVRCVAWAPNVGLPRSVIASGGQDRKVVVWSQEVEGDGMSEWSSTEL
EAFPGPVWSVSWSATGSVLGVACGDDQVTLWKEEMDGSWKKVSDVTAKGT
RAAESS*
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spliced messenger RNA

>Gvermi11535.t1 ID=Gvermi11535.t1|Name=Gvermi11535.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1071bp|location=Sequence derived from alignment at ScGOVlb_3404:756796..757950+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTATGCCCCCTGCCGCCATGCCGCAGCCCGCGATGGCCCCCCCCGC
GCCCGTGGGCGCCGCTGCGGCGCCCATCACGCAGCAAACGACCCCCCCCA
AGTCCGTGGTGCACACCGCGCACTCCGACATGATCCACGACGCGCAGCTG
GACTTTTACGGGCGGCGGCTGGCGACGTGCTCGTCGGACCGCACGATCAA
GATCTTCCAGGTGGAGCGCAGCGGGGCgcaccggcacgaggcgacgctgg
aggggcacgagggcgcggtgtggcaggtggcgtgggcgcacccgacgcgg
cacgggcGGCCGCTGCTGGCGTCGGCGTCGCACGACGGGCGCGTGATCGT
GTGGATCGAGGACGCGCCTACGATGTGGCGGCAGTACTACGAGTACGCGT
GGCACGCGTCGTCCGTCAACGCGGTGGCGTTCGCGCCGTGCGAGTTTGGG
CTGGTGTTTGCGTGCGCCAGCTCGGACGGCTTCGTGTCGGTGTGCTCGCG
GCTGCAGGACGGGACGTGGGACGAGCGGCGCGTGAGCGAGTCGGTGGGCG
GGCACGCGCACACGCACGCGCTGGGCGCCAACTCGGTGTCGTGggcgccg
gcggtggcggccggcgggctgtggatggcggagcgcgcggcgccgccggc
gATGCGCATGGTGACGGGCGGGTGCGACCAGATGGTGAAGGTGTGGACGT
TTGACGGCGAGAGCAACAACTGGGTGCTGGAGGGCAAGGCGCTCAAGGCG
CACCGCGAGATGGTGCGGTGCGTGGCGTGGGCGCCCAACGTGGGGCTGCC
GCGGTCGGTGATTGCCAGCGGCGGGCAGGACAGGAAggtggtggtgtgga
gccaggaggtggagggcgacgggatgtcggagtggagCAGCACGGAGCTG
GAGGCGTTCCCAGGGCCGGTGTGGTCCGTGAGTTGGAGCGCGACGGGCAG
CGTGCTGGGGGTGGCGTGTGGCGACGACCAGGTGACGCTGTGGAAGGAGG
AAATGGACGGGAGCTGGAAGAAGGTGAGCGACGTGACGGCGAAGGGGACG
CGTGCGGCGGAGAGCTCGTAG
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protein sequence of Gvermi11535.t1

>Gvermi11535.t1 ID=Gvermi11535.t1|Name=Gvermi11535.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=357bp
MAMPPAAMPQPAMAPPAPVGAAAAPITQQTTPPKSVVHTAHSDMIHDAQL
DFYGRRLATCSSDRTIKIFQVERSGAHRHEATLEGHEGAVWQVAWAHPTR
HGRPLLASASHDGRVIVWIEDAPTMWRQYYEYAWHASSVNAVAFAPCEFG
LVFACASSDGFVSVCSRLQDGTWDERRVSESVGGHAHTHALGANSVSWAP
AVAAGGLWMAERAAPPAMRMVTGGCDQMVKVWTFDGESNNWVLEGKALKA
HREMVRCVAWAPNVGLPRSVIASGGQDRKVVVWSQEVEGDGMSEWSSTEL
EAFPGPVWSVSWSATGSVLGVACGDDQVTLWKEEMDGSWKKVSDVTAKGT
RAAESS*
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mRNA from alignment at ScGOVlb_3404:756796..757950+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11535.t1 ID=Gvermi11535.t1|Name=Gvermi11535.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1155bp|location=Sequence derived from alignment at ScGOVlb_3404:756796..757950+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTATGCCCCCTGCCGCCATGCCGCAGCCCGCGATGGCCCCCCCCGC
GCCCGTGGGCGCCGCTGCGGCGCCCATCACGCAGCAAACGGTGAGTTTGG
CCGCGTTGCACCCTCCCGCTGCGTGCCGCGCGCGTTTGTTTTGCGCGCTC
TAGACACTAACGGCGTGTTTGCAGACCCCCCCCAAGTCCGTGGTGCACAC
CGCGCACTCCGACATGATCCACGACGCGCAGCTGGACTTTTACGGGCGGC
GGCTGGCGACGTGCTCGTCGGACCGCACGATCAAGATCTTCCAGGTGGAG
CGCAGCGGGGCgcaccggcacgaggcgacgctggaggggcacgagggcgc
ggtgtggcaggtggcgtgggcgcacccgacgcggcacgggcGGCCGCTGC
TGGCGTCGGCGTCGCACGACGGGCGCGTGATCGTGTGGATCGAGGACGCG
CCTACGATGTGGCGGCAGTACTACGAGTACGCGTGGCACGCGTCGTCCGT
CAACGCGGTGGCGTTCGCGCCGTGCGAGTTTGGGCTGGTGTTTGCGTGCG
CCAGCTCGGACGGCTTCGTGTCGGTGTGCTCGCGGCTGCAGGACGGGACG
TGGGACGAGCGGCGCGTGAGCGAGTCGGTGGGCGGGCACGCGCACACGCA
CGCGCTGGGCGCCAACTCGGTGTCGTGggcgccggcggtggcggccggcg
ggctgtggatggcggagcgcgcggcgccgccggcgATGCGCATGGTGACG
GGCGGGTGCGACCAGATGGTGAAGGTGTGGACGTTTGACGGCGAGAGCAA
CAACTGGGTGCTGGAGGGCAAGGCGCTCAAGGCGCACCGCGAGATGGTGC
GGTGCGTGGCGTGGGCGCCCAACGTGGGGCTGCCGCGGTCGGTGATTGCC
AGCGGCGGGCAGGACAGGAAggtggtggtgtggagccaggaggtggaggg
cgacgggatgtcggagtggagCAGCACGGAGCTGGAGGCGTTCCCAGGGC
CGGTGTGGTCCGTGAGTTGGAGCGCGACGGGCAGCGTGCTGGGGGTGGCG
TGTGGCGACGACCAGGTGACGCTGTGGAAGGAGGAAATGGACGGGAGCTG
GAAGAAGGTGAGCGACGTGACGGCGAAGGGGACGCGTGCGGCGGAGAGCT
CGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:756796..757950+

>Gvermi11535.t1 ID=Gvermi11535.t1|Name=Gvermi11535.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1071bp|location=Sequence derived from alignment at ScGOVlb_3404:756796..757950+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTATGCCCCCTGCCGCCATGCCGCAGCCCGCGATGGCCCCCCCCGC
GCCCGTGGGCGCCGCTGCGGCGCCCATCACGCAGCAAACGACCCCCCCCA
AGTCCGTGGTGCACACCGCGCACTCCGACATGATCCACGACGCGCAGCTG
GACTTTTACGGGCGGCGGCTGGCGACGTGCTCGTCGGACCGCACGATCAA
GATCTTCCAGGTGGAGCGCAGCGGGGCgcaccggcacgaggcgacgctgg
aggggcacgagggcgcggtgtggcaggtggcgtgggcgcacccgacgcgg
cacgggcGGCCGCTGCTGGCGTCGGCGTCGCACGACGGGCGCGTGATCGT
GTGGATCGAGGACGCGCCTACGATGTGGCGGCAGTACTACGAGTACGCGT
GGCACGCGTCGTCCGTCAACGCGGTGGCGTTCGCGCCGTGCGAGTTTGGG
CTGGTGTTTGCGTGCGCCAGCTCGGACGGCTTCGTGTCGGTGTGCTCGCG
GCTGCAGGACGGGACGTGGGACGAGCGGCGCGTGAGCGAGTCGGTGGGCG
GGCACGCGCACACGCACGCGCTGGGCGCCAACTCGGTGTCGTGggcgccg
gcggtggcggccggcgggctgtggatggcggagcgcgcggcgccgccggc
gATGCGCATGGTGACGGGCGGGTGCGACCAGATGGTGAAGGTGTGGACGT
TTGACGGCGAGAGCAACAACTGGGTGCTGGAGGGCAAGGCGCTCAAGGCG
CACCGCGAGATGGTGCGGTGCGTGGCGTGGGCGCCCAACGTGGGGCTGCC
GCGGTCGGTGATTGCCAGCGGCGGGCAGGACAGGAAggtggtggtgtgga
gccaggaggtggagggcgacgggatgtcggagtggagCAGCACGGAGCTG
GAGGCGTTCCCAGGGCCGGTGTGGTCCGTGAGTTGGAGCGCGACGGGCAG
CGTGCTGGGGGTGGCGTGTGGCGACGACCAGGTGACGCTGTGGAAGGAGG
AAATGGACGGGAGCTGGAAGAAGGTGAGCGACGTGACGGCGAAGGGGACG
CGTGCGGCGGAGAGCTCGTAG
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