Gvermi11529.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11529.t1
Unique NameGvermi11529.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length361
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:740227..741309 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1048339.KB913029_gene2189
Preferred nameHao
PFAMsFMN_dh
Max annot lvl201174|Actinobacteria
KEGG rclassRC00240
KEGG koko:K16422
KEGG ReactionR06633
KEGG Pathwayko00261,ko01055,ko01130,map00261,map01055,map01130
Evalue4.41e-84
EggNOG OGsCOG1304@1|root,COG1304@2|Bacteria,2GJA5@201174|Actinobacteria,4ESKC@85013|Frankiales
EC1.1.3.46
DescriptionEvidence 2a Function of homologous gene experimentally demonstrated in an other organism
COG categoryC
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11529Gvermi11529Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 740227..741309 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11529.t1.stop1Gvermi11529.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 740227..740229 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11529.t1.CDS1Gvermi11529.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 740227..741309 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11529.t1.exon1Gvermi11529.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 740227..741309 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11529.t1.start1Gvermi11529.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 741307..741309 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11529.t1Gvermi11529.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 740227..741309 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11529.t1 ID=Gvermi11529.t1|Name=Gvermi11529.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=361bp
MAPKPGAALELRPAAADLLPLPIYDYFAGGAADEYTYRANLFAFRRWLFV
PRVLGDVHNVSAATTVPPLPPLAAPLLVAPMAMQCMTHPDGELAVARAAR
AERLAYVASTFATTSLETIAESAVPRLFQLYSFADHAITHALIRRAARAK
YSAIVLTVDAPVFGRRLRDDRNAFQLPAHLSFANVEHIRARDRRNTMHVL
SEHIDQRLTFERLRQLVQQSPLPIWVKGVLRAQDAVAAVDAGASAVIVSN
HGGRQLDGTVPSLHALPAVVEALDGRVPVLFDSGVRCGEHVVKAIALGAS
AVLLGRPVLWALAEGGEPAVRAYFKEIKHQIQLTMKLVGATCIQEITRDL
LVENVLPSNL*
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spliced messenger RNA

>Gvermi11529.t1 ID=Gvermi11529.t1|Name=Gvermi11529.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1083bp|location=Sequence derived from alignment at ScGOVlb_3404:740227..741309- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCCCAAGCCCGGCGCCGCGCTGGAGCTGCGCCCGGCCGCGGCGGA
CCTGCTCCCCCTTCCCATCTACGACTACTTTGCCGGCGGCGCCGCCGACG
AGTACACGTACCGCGCCAACCTGTTCGCCTTCCGCCGCTGGCTCTTCGTC
CCTCGCGTGCTTGGCGACGTGCACAACGTCAGCGCGGCCACCACCGTCCC
GCCGCTGCCGCCGCTCGCCGCCCCCCTGCTCGTCGCCCCCATGGCCATGC
AGTGCATGACGCACCCCGACGGCGAGCTGGCCGTCGCGCGCGCCGCGCGC
GCCGAGCGCCTCGCCTACGTCGCCTCCACCTTCGCCACCACCTCGCTGGA
GACCATCGCCGAGTCCGCCGTGCCCCGCCTGTTCCAGCTCTACAGCTTCG
CCGACCACGCCATCACGCACGCCCTCATCCGCCGAGCCGCCCGCGCCAAG
TACTCAGCCATCGTCCTCACCGTCGATGCGCCCGTGTTCGGCCGCCGCCT
GCGCGACGACCGCAACGCCTTCCAGCTCCCCGCGCACCTTTCGTTTGCCA
ACGTGGAACACATCCGCGCGCGCGACCGCCGCAACACCATGCACGTGCTG
TCCGAGCACATTGACCAGCGCCTCACCTTCGAGCGCCTGCGCCAGCTCGT
GCAGCAGTCGCCGCTGCCCATCTGGGTCAAGGGCGTCCTGCGCGCGCAGG
ACGCCGTGGCCGCCGTCGACGCGGGCGCGTCCGCCGTCATCGTCAGCAAC
CACGGCGGCCGCCAGCTGGACGGCACCGTGCCGTCGCTTCACGCGCTGCC
CGCCGTCGTCGAGGCGCTCGACGGCCGCGTGCCCGTGCTCTTCGACTCGG
GCGTCCGCTGCGGCGAGCACGTCGTCAAGGCCATTGCGCTCGGCGCCTCC
GCCGTGCTGCTGGGCAGACCTGTGCTTTGGGCGCTGGCCGAGGGCGGTGA
GCCGGCCGTGCGCGCCTACTTCAAAGAGATCAAACACCAAATTCAGCTCA
CCATGAAGCTTGTGGGCGCCACGTGCATTCAGGAGATCACCCGCGACCTG
TTGGTTGAGAATGTATTGCCGTCAAACCTCTAG
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protein sequence of Gvermi11529.t1

>Gvermi11529.t1 ID=Gvermi11529.t1|Name=Gvermi11529.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=361bp
MAPKPGAALELRPAAADLLPLPIYDYFAGGAADEYTYRANLFAFRRWLFV
PRVLGDVHNVSAATTVPPLPPLAAPLLVAPMAMQCMTHPDGELAVARAAR
AERLAYVASTFATTSLETIAESAVPRLFQLYSFADHAITHALIRRAARAK
YSAIVLTVDAPVFGRRLRDDRNAFQLPAHLSFANVEHIRARDRRNTMHVL
SEHIDQRLTFERLRQLVQQSPLPIWVKGVLRAQDAVAAVDAGASAVIVSN
HGGRQLDGTVPSLHALPAVVEALDGRVPVLFDSGVRCGEHVVKAIALGAS
AVLLGRPVLWALAEGGEPAVRAYFKEIKHQIQLTMKLVGATCIQEITRDL
LVENVLPSNL*
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mRNA from alignment at ScGOVlb_3404:740227..741309-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11529.t1 ID=Gvermi11529.t1|Name=Gvermi11529.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1083bp|location=Sequence derived from alignment at ScGOVlb_3404:740227..741309- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTCCCAAGCCCGGCGCCGCGCTGGAGCTGCGCCCGGCCGCGGCGGA
CCTGCTCCCCCTTCCCATCTACGACTACTTTGCCGGCGGCGCCGCCGACG
AGTACACGTACCGCGCCAACCTGTTCGCCTTCCGCCGCTGGCTCTTCGTC
CCTCGCGTGCTTGGCGACGTGCACAACGTCAGCGCGGCCACCACCGTCCC
GCCGCTGCCGCCGCTCGCCGCCCCCCTGCTCGTCGCCCCCATGGCCATGC
AGTGCATGACGCACCCCGACGGCGAGCTGGCCGTCGCGCGCGCCGCGCGC
GCCGAGCGCCTCGCCTACGTCGCCTCCACCTTCGCCACCACCTCGCTGGA
GACCATCGCCGAGTCCGCCGTGCCCCGCCTGTTCCAGCTCTACAGCTTCG
CCGACCACGCCATCACGCACGCCCTCATCCGCCGAGCCGCCCGCGCCAAG
TACTCAGCCATCGTCCTCACCGTCGATGCGCCCGTGTTCGGCCGCCGCCT
GCGCGACGACCGCAACGCCTTCCAGCTCCCCGCGCACCTTTCGTTTGCCA
ACGTGGAACACATCCGCGCGCGCGACCGCCGCAACACCATGCACGTGCTG
TCCGAGCACATTGACCAGCGCCTCACCTTCGAGCGCCTGCGCCAGCTCGT
GCAGCAGTCGCCGCTGCCCATCTGGGTCAAGGGCGTCCTGCGCGCGCAGG
ACGCCGTGGCCGCCGTCGACGCGGGCGCGTCCGCCGTCATCGTCAGCAAC
CACGGCGGCCGCCAGCTGGACGGCACCGTGCCGTCGCTTCACGCGCTGCC
CGCCGTCGTCGAGGCGCTCGACGGCCGCGTGCCCGTGCTCTTCGACTCGG
GCGTCCGCTGCGGCGAGCACGTCGTCAAGGCCATTGCGCTCGGCGCCTCC
GCCGTGCTGCTGGGCAGACCTGTGCTTTGGGCGCTGGCCGAGGGCGGTGA
GCCGGCCGTGCGCGCCTACTTCAAAGAGATCAAACACCAAATTCAGCTCA
CCATGAAGCTTGTGGGCGCCACGTGCATTCAGGAGATCACCCGCGACCTG
TTGGTTGAGAATGTATTGCCGTCAAACCTCTAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:740227..741309-

>Gvermi11529.t1 ID=Gvermi11529.t1|Name=Gvermi11529.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1083bp|location=Sequence derived from alignment at ScGOVlb_3404:740227..741309- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCTCCCAAGCCCGGCGCCGCGCTGGAGCTGCGCCCGGCCGCGGCGGA
CCTGCTCCCCCTTCCCATCTACGACTACTTTGCCGGCGGCGCCGCCGACG
AGTACACGTACCGCGCCAACCTGTTCGCCTTCCGCCGCTGGCTCTTCGTC
CCTCGCGTGCTTGGCGACGTGCACAACGTCAGCGCGGCCACCACCGTCCC
GCCGCTGCCGCCGCTCGCCGCCCCCCTGCTCGTCGCCCCCATGGCCATGC
AGTGCATGACGCACCCCGACGGCGAGCTGGCCGTCGCGCGCGCCGCGCGC
GCCGAGCGCCTCGCCTACGTCGCCTCCACCTTCGCCACCACCTCGCTGGA
GACCATCGCCGAGTCCGCCGTGCCCCGCCTGTTCCAGCTCTACAGCTTCG
CCGACCACGCCATCACGCACGCCCTCATCCGCCGAGCCGCCCGCGCCAAG
TACTCAGCCATCGTCCTCACCGTCGATGCGCCCGTGTTCGGCCGCCGCCT
GCGCGACGACCGCAACGCCTTCCAGCTCCCCGCGCACCTTTCGTTTGCCA
ACGTGGAACACATCCGCGCGCGCGACCGCCGCAACACCATGCACGTGCTG
TCCGAGCACATTGACCAGCGCCTCACCTTCGAGCGCCTGCGCCAGCTCGT
GCAGCAGTCGCCGCTGCCCATCTGGGTCAAGGGCGTCCTGCGCGCGCAGG
ACGCCGTGGCCGCCGTCGACGCGGGCGCGTCCGCCGTCATCGTCAGCAAC
CACGGCGGCCGCCAGCTGGACGGCACCGTGCCGTCGCTTCACGCGCTGCC
CGCCGTCGTCGAGGCGCTCGACGGCCGCGTGCCCGTGCTCTTCGACTCGG
GCGTCCGCTGCGGCGAGCACGTCGTCAAGGCCATTGCGCTCGGCGCCTCC
GCCGTGCTGCTGGGCAGACCTGTGCTTTGGGCGCTGGCCGAGGGCGGTGA
GCCGGCCGTGCGCGCCTACTTCAAAGAGATCAAACACCAAATTCAGCTCA
CCATGAAGCTTGTGGGCGCCACGTGCATTCAGGAGATCACCCGCGACCTG
TTGGTTGAGAATGTATTGCCGTCAAACCTCTAG
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