Gvermi11528.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11528.t1
Unique NameGvermi11528.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length105
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:738489..738932 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1487953.JMKF01000056_gene4488
Preferred nameacyP
PFAMsAcylphosphatase
Max annot lvl1117|Cyanobacteria
KEGG rclassRC00043
KEGG koko:K01512
KEGG ReactionR00317,R01421,R01515
KEGG Pathwayko00620,ko00627,ko01120,map00620,map00627,map01120
GOsGO:0003674,GO:0003824,GO:0003998,GO:0016787,GO:0016817,GO:0016818
Evalue7.13e-17
EggNOG OGsCOG1254@1|root,COG1254@2|Bacteria,1G7UW@1117|Cyanobacteria,1HCUD@1150|Oscillatoriales
EC3.6.1.7
DescriptionBelongs to the acylphosphatase family
COG categoryC
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11528Gvermi11528Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 738489..738932 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11528.t1Gvermi11528.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 738489..738932 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11528.t1.start1Gvermi11528.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 738489..738491 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11528.t1.CDS1Gvermi11528.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 738489..738571 +
Gvermi11528.t1.CDS2Gvermi11528.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 738701..738932 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11528.t1.exon1Gvermi11528.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 738489..738571 +
Gvermi11528.t1.exon2Gvermi11528.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 738701..738932 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11528.t1.intron1Gvermi11528.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 738572..738700 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11528.t1.stop1Gvermi11528.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 738930..738932 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11528.t1 ID=Gvermi11528.t1|Name=Gvermi11528.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=105bp
MTDRAHPPEQLFTASFTISGRVQGVFYRATACTVAQQLGLVGYVMNNSDG
SVQLCAQGTLPQIQQMRQWCHQGPPMASVTAVTDVHPIQPISQPTYAHFT
VKRA*
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spliced messenger RNA

>Gvermi11528.t1 ID=Gvermi11528.t1|Name=Gvermi11528.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=315bp|location=Sequence derived from alignment at ScGOVlb_3404:738489..738932+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAGACCGTGCCCACCCCCCTGAACAACTCTTTACCGCATCTTTCAC
CATATCTGGAAGAGTGCAGGGCGTCTTCTATCGCGCCACCGCATGCACCG
TCGCCCAGCAGCTCGGGCTCGTGGGCTACGTCATGAACAACTCCGACGGC
AGTGTGCAGCTGTGCGCGCAGGGCACTCTCCCTCAGATTCAACAAATGCG
CCAATGGTGTCATCAGGGCCCCCCGATGGCGTCCGTCACCGCCGTCACCG
ATGTTCATCCGATTCAGCCCATTTCGCAACCGACCTACGCGCACTTCACC
GTCAAACGCGCTTGA
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protein sequence of Gvermi11528.t1

>Gvermi11528.t1 ID=Gvermi11528.t1|Name=Gvermi11528.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=105bp
MTDRAHPPEQLFTASFTISGRVQGVFYRATACTVAQQLGLVGYVMNNSDG
SVQLCAQGTLPQIQQMRQWCHQGPPMASVTAVTDVHPIQPISQPTYAHFT
VKRA*
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mRNA from alignment at ScGOVlb_3404:738489..738932+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11528.t1 ID=Gvermi11528.t1|Name=Gvermi11528.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=444bp|location=Sequence derived from alignment at ScGOVlb_3404:738489..738932+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACAGACCGTGCCCACCCCCCTGAACAACTCTTTACCGCATCTTTCAC
CATATCTGGAAGAGTGCAGGGCGTCTTCTATCGGTAAGACCGCCGTTCAA
TCCCCCCTAGCGCAGCCACACACCACCCATTTCGCGCCAGCCGTTGATTA
ACCGTCAACGCGCCCGTGTCCCTGTCCATTTCTCCGTCGCGCCCAATCAC
GCGTGTGAGCAGCGCCACCGCATGCACCGTCGCCCAGCAGCTCGGGCTCG
TGGGCTACGTCATGAACAACTCCGACGGCAGTGTGCAGCTGTGCGCGCAG
GGCACTCTCCCTCAGATTCAACAAATGCGCCAATGGTGTCATCAGGGCCC
CCCGATGGCGTCCGTCACCGCCGTCACCGATGTTCATCCGATTCAGCCCA
TTTCGCAACCGACCTACGCGCACTTCACCGTCAAACGCGCTTGA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:738489..738932+

>Gvermi11528.t1 ID=Gvermi11528.t1|Name=Gvermi11528.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=315bp|location=Sequence derived from alignment at ScGOVlb_3404:738489..738932+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGACAGACCGTGCCCACCCCCCTGAACAACTCTTTACCGCATCTTTCAC
CATATCTGGAAGAGTGCAGGGCGTCTTCTATCGCGCCACCGCATGCACCG
TCGCCCAGCAGCTCGGGCTCGTGGGCTACGTCATGAACAACTCCGACGGC
AGTGTGCAGCTGTGCGCGCAGGGCACTCTCCCTCAGATTCAACAAATGCG
CCAATGGTGTCATCAGGGCCCCCCGATGGCGTCCGTCACCGCCGTCACCG
ATGTTCATCCGATTCAGCCCATTTCGCAACCGACCTACGCGCACTTCACC
GTCAAACGCGCTTGA
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