Gvermi11525.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11525.t1
Unique NameGvermi11525.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length594
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:729524..731305 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708950.1
PFAMsDUF563
Max annot lvl2759|Eukaryota
KEGG rclassRC00005,RC00059
KEGG koko:K18134
KEGG ReactionR09304,R09676
KEGG Pathwayko00514,map00514
Evalue3.43e-11
EggNOG OGs29MVY@1|root,2RV66@2759|Eukaryota
EC2.4.1.255
DescriptionProtein of unknown function (DUF563)
COG categoryS
CAZyGT41
BRITEko00000,ko00001,ko01000,ko01003
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11525Gvermi11525Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 729524..731305 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11525.t1.stop1Gvermi11525.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 729524..729526 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11525.t1.CDS1Gvermi11525.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 729524..731305 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11525.t1.exon1Gvermi11525.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 729524..731305 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11525.t1.start1Gvermi11525.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 731303..731305 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11525.t1Gvermi11525.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 729524..731305 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11525.t1 ID=Gvermi11525.t1|Name=Gvermi11525.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=594bp
MAAKLRFRARAKATQLFLPLKRSPRLSPRLLSFVAVVCFVSCLAVAFRQF
NYLYHLTQPDEVPGSYNPSSAESRSSQFSRQRLHDIESSVNLWRHEDRNC
PPEQNPPPPSLYATGSERCFALGVPDSVNRTLHPGDPASFWQMNSRALCY
SARPICLYGRGMRTLLSFEPRGSGSCQVLSVARNRLHEASQVGLNESCAA
FRNRYVASMFGKEVFHSWQQWKQYVDSITHVNPRHHAVAWRSEFAIIVPK
YDWSYNICHYNRVWNFIIYVIRNLELFVPDAEQVKHIDVLFRSGYKYDMP
WHNGIRNSTLPYLERQLGKTIRVAKMRYDYLRDYQCVRRAILLGREARVD
AFPFFNDTAVWRPEQLVSDTHWPVIPKDALWLRNAVLSENGLGSLATSVV
DGVERFDHIRLPPRRVGFLERSPRSKRRLTPSGKMWLENTVEELCKKHGM
QYKHIRTSGAMTFKEQVSELQSIGLAVGIHGANMVNTVFMPVAGALFEIF
PWRYVRYYYASGGNSGLRYSFHEAEHGYERNCSFSQATCFMKYRESVIYL
TEADRRVIRKRLENSMMYVAALHRRFADGVIPLRQEGNIYQFG*
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spliced messenger RNA

>Gvermi11525.t1 ID=Gvermi11525.t1|Name=Gvermi11525.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1782bp|location=Sequence derived from alignment at ScGOVlb_3404:729524..731305- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGCCAAGCTGCGTTTCCGTGCTCGCGCCAAGGCGACGCAGCTGTT
TCTGCCGCTCAAGCGCTCCCCCCGCCTGTCCCCCCGCCTCCTTTCTTTCG
TCGCCGTCGTGTGCTTTGTTTCGTGTCTGGCTGTCGCCTTTCGTCAGTTT
AACTACTTGTACCACTTGACGCAGCCGGACGAGGTTCCTGGCAGTTACAA
CCCCTCGTCCGCCGAGTCTCGCTCGTCGCAGTTCTCGCGCCAGCGCCTCC
ACGACATCGAGTCCTCGGTCAATTTGTGGCGCCACGAGGACCGAAACTGC
CCGCCCGAGCAAAACCCCCCCCCGCCCTCCCTGTACGCCACCGGATCTGA
GCGATGCTTCGCGCTGGGCGTGCCGGATTCCGTCAACAGAACGCTGCACC
CAGGCGACCCTGCCTCATTTTGGCAGATGAACAGTCGAGCACTGTGTTAC
TCTGCGCGCCCGATATGTCTGTACGGCAGAGGCATGAGAACGCTGCTATC
GTTTGAGCCTCGGGGGTCGGGCAGCTGTCAGGTGCTTTCCGTGGCGCGCA
ACCGGCTGCACGAGGCGTCCCAAGTCGGCCTCAACGAATCCTGTGCCGCC
TTTCGAAATCGTTACGTTGCCTCGATGTTTGGGAAAGAGGTGTTTCACTC
GTGGCAGCAATGGAAGCAGTACGTTGATTCAATCACACATGTGAACCCCA
GACATCATGCTGTAGCATGGCGATCCGAGTTTGCCATTATCGTCCCAAAG
TACGACTGGTCGTACAACATCTGCCACTACAATCGCGTGTGGAACTTCAT
CATCTATGTGATCCGCAATCTTGAGCTTTTTGTTCCGGACGCCGAGCAAG
TGAAACATATCGATGTGCTGTTCCGTTCCGGGTACAAGTACGACATGCCG
TGGCACAATGGAATACGAAACAGTACGCTGCCGTATCTGGAACGACAGCT
TGGCAAAACGATCCGCGTCGCAAAGATGCGCTACGACTATCTGCGCGACT
ATCAGTGCGTTCGGAGAGCGATTTTGCTCGGACGAGAAGCAAGAGTGGAC
GCGTTTCCTTTCTTCAACGACACCGCGGTGTGGCGGCCTGAACAGCTGGT
TTCCGATACGCACTGGCCAGTGATTCCAAAAGACGCGCTTTGGTTGCGAA
ATGCTGTGCTGAGCGAGAACGGCCTGGGCTCGCTTGCGACGTCCGTGGTG
GACGGCGTGGAACGGTTTGATCACATTCGGTTGCCGCCGCGCAGAGTGGG
CTTTCTGGAGCGATCGCCGCGGTCCAAGCGGCGGCTCACACCGAGTGGGA
AGATGTGGTTGGAGAACACGGTGGAAGAGCTGTGCAAGAAGCACGGCATG
CAATACAAACACATCCGCACCAGCGGCGCGATGACGTTCAAGGAGCAGGT
GAGTGAGCTGCAGTCCATCGGGCTGGCCGTGGGCATCCACGGCGCCAACA
TGGTGAACACGGTGTTCATGCCGGTGGCAGGCGCTCTTTTCGAAATCTTT
CCGTGGCGATACGTGCGGTATTACTACGCGAGTGGCGGCAATTCCGGGCT
GAGGTACAGCTTCCACGAAGCTGAGCACGGGTACGAACGCAACTGCAGCT
TTTCGCAGGCCACGTGCTTCATGAAGTACCGCGAGTCGGTGATTTACCTC
ACGGAGGCAGATCGACGAGTGATCCGCAAGCGACTGGAAAACAGCATGAT
GTACGTGGCGGCGCTGCACCGCAGGTTTGCGGATGGTGTCATACCACTTC
GACAAGAGGGAAACATATACCAATTCGGGTAA
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protein sequence of Gvermi11525.t1

>Gvermi11525.t1 ID=Gvermi11525.t1|Name=Gvermi11525.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=594bp
MAAKLRFRARAKATQLFLPLKRSPRLSPRLLSFVAVVCFVSCLAVAFRQF
NYLYHLTQPDEVPGSYNPSSAESRSSQFSRQRLHDIESSVNLWRHEDRNC
PPEQNPPPPSLYATGSERCFALGVPDSVNRTLHPGDPASFWQMNSRALCY
SARPICLYGRGMRTLLSFEPRGSGSCQVLSVARNRLHEASQVGLNESCAA
FRNRYVASMFGKEVFHSWQQWKQYVDSITHVNPRHHAVAWRSEFAIIVPK
YDWSYNICHYNRVWNFIIYVIRNLELFVPDAEQVKHIDVLFRSGYKYDMP
WHNGIRNSTLPYLERQLGKTIRVAKMRYDYLRDYQCVRRAILLGREARVD
AFPFFNDTAVWRPEQLVSDTHWPVIPKDALWLRNAVLSENGLGSLATSVV
DGVERFDHIRLPPRRVGFLERSPRSKRRLTPSGKMWLENTVEELCKKHGM
QYKHIRTSGAMTFKEQVSELQSIGLAVGIHGANMVNTVFMPVAGALFEIF
PWRYVRYYYASGGNSGLRYSFHEAEHGYERNCSFSQATCFMKYRESVIYL
TEADRRVIRKRLENSMMYVAALHRRFADGVIPLRQEGNIYQFG*
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mRNA from alignment at ScGOVlb_3404:729524..731305-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11525.t1 ID=Gvermi11525.t1|Name=Gvermi11525.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1782bp|location=Sequence derived from alignment at ScGOVlb_3404:729524..731305- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGGCCAAGCTGCGTTTCCGTGCTCGCGCCAAGGCGACGCAGCTGTT
TCTGCCGCTCAAGCGCTCCCCCCGCCTGTCCCCCCGCCTCCTTTCTTTCG
TCGCCGTCGTGTGCTTTGTTTCGTGTCTGGCTGTCGCCTTTCGTCAGTTT
AACTACTTGTACCACTTGACGCAGCCGGACGAGGTTCCTGGCAGTTACAA
CCCCTCGTCCGCCGAGTCTCGCTCGTCGCAGTTCTCGCGCCAGCGCCTCC
ACGACATCGAGTCCTCGGTCAATTTGTGGCGCCACGAGGACCGAAACTGC
CCGCCCGAGCAAAACCCCCCCCCGCCCTCCCTGTACGCCACCGGATCTGA
GCGATGCTTCGCGCTGGGCGTGCCGGATTCCGTCAACAGAACGCTGCACC
CAGGCGACCCTGCCTCATTTTGGCAGATGAACAGTCGAGCACTGTGTTAC
TCTGCGCGCCCGATATGTCTGTACGGCAGAGGCATGAGAACGCTGCTATC
GTTTGAGCCTCGGGGGTCGGGCAGCTGTCAGGTGCTTTCCGTGGCGCGCA
ACCGGCTGCACGAGGCGTCCCAAGTCGGCCTCAACGAATCCTGTGCCGCC
TTTCGAAATCGTTACGTTGCCTCGATGTTTGGGAAAGAGGTGTTTCACTC
GTGGCAGCAATGGAAGCAGTACGTTGATTCAATCACACATGTGAACCCCA
GACATCATGCTGTAGCATGGCGATCCGAGTTTGCCATTATCGTCCCAAAG
TACGACTGGTCGTACAACATCTGCCACTACAATCGCGTGTGGAACTTCAT
CATCTATGTGATCCGCAATCTTGAGCTTTTTGTTCCGGACGCCGAGCAAG
TGAAACATATCGATGTGCTGTTCCGTTCCGGGTACAAGTACGACATGCCG
TGGCACAATGGAATACGAAACAGTACGCTGCCGTATCTGGAACGACAGCT
TGGCAAAACGATCCGCGTCGCAAAGATGCGCTACGACTATCTGCGCGACT
ATCAGTGCGTTCGGAGAGCGATTTTGCTCGGACGAGAAGCAAGAGTGGAC
GCGTTTCCTTTCTTCAACGACACCGCGGTGTGGCGGCCTGAACAGCTGGT
TTCCGATACGCACTGGCCAGTGATTCCAAAAGACGCGCTTTGGTTGCGAA
ATGCTGTGCTGAGCGAGAACGGCCTGGGCTCGCTTGCGACGTCCGTGGTG
GACGGCGTGGAACGGTTTGATCACATTCGGTTGCCGCCGCGCAGAGTGGG
CTTTCTGGAGCGATCGCCGCGGTCCAAGCGGCGGCTCACACCGAGTGGGA
AGATGTGGTTGGAGAACACGGTGGAAGAGCTGTGCAAGAAGCACGGCATG
CAATACAAACACATCCGCACCAGCGGCGCGATGACGTTCAAGGAGCAGGT
GAGTGAGCTGCAGTCCATCGGGCTGGCCGTGGGCATCCACGGCGCCAACA
TGGTGAACACGGTGTTCATGCCGGTGGCAGGCGCTCTTTTCGAAATCTTT
CCGTGGCGATACGTGCGGTATTACTACGCGAGTGGCGGCAATTCCGGGCT
GAGGTACAGCTTCCACGAAGCTGAGCACGGGTACGAACGCAACTGCAGCT
TTTCGCAGGCCACGTGCTTCATGAAGTACCGCGAGTCGGTGATTTACCTC
ACGGAGGCAGATCGACGAGTGATCCGCAAGCGACTGGAAAACAGCATGAT
GTACGTGGCGGCGCTGCACCGCAGGTTTGCGGATGGTGTCATACCACTTC
GACAAGAGGGAAACATATACCAATTCGGGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:729524..731305-

>Gvermi11525.t1 ID=Gvermi11525.t1|Name=Gvermi11525.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1782bp|location=Sequence derived from alignment at ScGOVlb_3404:729524..731305- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGCGGCCAAGCTGCGTTTCCGTGCTCGCGCCAAGGCGACGCAGCTGTT
TCTGCCGCTCAAGCGCTCCCCCCGCCTGTCCCCCCGCCTCCTTTCTTTCG
TCGCCGTCGTGTGCTTTGTTTCGTGTCTGGCTGTCGCCTTTCGTCAGTTT
AACTACTTGTACCACTTGACGCAGCCGGACGAGGTTCCTGGCAGTTACAA
CCCCTCGTCCGCCGAGTCTCGCTCGTCGCAGTTCTCGCGCCAGCGCCTCC
ACGACATCGAGTCCTCGGTCAATTTGTGGCGCCACGAGGACCGAAACTGC
CCGCCCGAGCAAAACCCCCCCCCGCCCTCCCTGTACGCCACCGGATCTGA
GCGATGCTTCGCGCTGGGCGTGCCGGATTCCGTCAACAGAACGCTGCACC
CAGGCGACCCTGCCTCATTTTGGCAGATGAACAGTCGAGCACTGTGTTAC
TCTGCGCGCCCGATATGTCTGTACGGCAGAGGCATGAGAACGCTGCTATC
GTTTGAGCCTCGGGGGTCGGGCAGCTGTCAGGTGCTTTCCGTGGCGCGCA
ACCGGCTGCACGAGGCGTCCCAAGTCGGCCTCAACGAATCCTGTGCCGCC
TTTCGAAATCGTTACGTTGCCTCGATGTTTGGGAAAGAGGTGTTTCACTC
GTGGCAGCAATGGAAGCAGTACGTTGATTCAATCACACATGTGAACCCCA
GACATCATGCTGTAGCATGGCGATCCGAGTTTGCCATTATCGTCCCAAAG
TACGACTGGTCGTACAACATCTGCCACTACAATCGCGTGTGGAACTTCAT
CATCTATGTGATCCGCAATCTTGAGCTTTTTGTTCCGGACGCCGAGCAAG
TGAAACATATCGATGTGCTGTTCCGTTCCGGGTACAAGTACGACATGCCG
TGGCACAATGGAATACGAAACAGTACGCTGCCGTATCTGGAACGACAGCT
TGGCAAAACGATCCGCGTCGCAAAGATGCGCTACGACTATCTGCGCGACT
ATCAGTGCGTTCGGAGAGCGATTTTGCTCGGACGAGAAGCAAGAGTGGAC
GCGTTTCCTTTCTTCAACGACACCGCGGTGTGGCGGCCTGAACAGCTGGT
TTCCGATACGCACTGGCCAGTGATTCCAAAAGACGCGCTTTGGTTGCGAA
ATGCTGTGCTGAGCGAGAACGGCCTGGGCTCGCTTGCGACGTCCGTGGTG
GACGGCGTGGAACGGTTTGATCACATTCGGTTGCCGCCGCGCAGAGTGGG
CTTTCTGGAGCGATCGCCGCGGTCCAAGCGGCGGCTCACACCGAGTGGGA
AGATGTGGTTGGAGAACACGGTGGAAGAGCTGTGCAAGAAGCACGGCATG
CAATACAAACACATCCGCACCAGCGGCGCGATGACGTTCAAGGAGCAGGT
GAGTGAGCTGCAGTCCATCGGGCTGGCCGTGGGCATCCACGGCGCCAACA
TGGTGAACACGGTGTTCATGCCGGTGGCAGGCGCTCTTTTCGAAATCTTT
CCGTGGCGATACGTGCGGTATTACTACGCGAGTGGCGGCAATTCCGGGCT
GAGGTACAGCTTCCACGAAGCTGAGCACGGGTACGAACGCAACTGCAGCT
TTTCGCAGGCCACGTGCTTCATGAAGTACCGCGAGTCGGTGATTTACCTC
ACGGAGGCAGATCGACGAGTGATCCGCAAGCGACTGGAAAACAGCATGAT
GTACGTGGCGGCGCTGCACCGCAGGTTTGCGGATGGTGTCATACCACTTC
GACAAGAGGGAAACATATACCAATTCGGGTAA
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