Gvermi11523.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11523.t1
Unique NameGvermi11523.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length274
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:724696..725517 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703792.1
Preferred nameegl
PFAMsDNA_pol_A_exo1,KH_1
Max annot lvl2759|Eukaryota
KEGG koko:K18740
GOsGO:0000003,GO:0000226,GO:0000578,GO:0001709,GO:0002164,GO:0002165,GO:0002168,GO:0003002,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006403,GO:0006417,GO:0006725,GO:0006807,GO:0006810,GO:0006996,GO:0007010,GO:0007017,GO:0007028,GO:0007097,GO:0007163,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007293,GO:0007294,GO:0007308,GO:0007309,GO:0007310,GO:0007312,GO:0007314,GO:0007315,GO:0007316,GO:0007350,GO:0007351,GO:0007389,GO:0007431,GO:0007435,GO:0007436,GO:0008150,GO:0008152,GO:0008298,GO:0008358,GO:0008595,GO:0009653,GO:0009790,GO:0009791,GO:0009798,GO:0009880,GO:0009886,GO:0009887,GO:0009889,GO:0009892,GO:0009948,GO:0009950,GO:0009952,GO:0009953,GO:0009987,GO:0009994,GO:0010468,GO:0010556,GO:0010605,GO:0010608,GO:0010629,GO:0015931,GO:0016043,GO:0016070,GO:0016325,GO:0016458,GO:0019094,GO:0019222,GO:0019953,GO:0021700,GO:0022412,GO:0022414,GO:0022607,GO:0022612,GO:0030154,GO:0030706,GO:0030716,GO:0030951,GO:0030952,GO:0031047,GO:0031323,GO:0031326,GO:0032268,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033036,GO:0034248,GO:0034587,GO:0034641,GO:0034660,GO:0035272,GO:0035282,GO:0035770,GO:0036464,GO:0042802,GO:0042803,GO:0043170,GO:0043186,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0044703,GO:0045165,GO:0045450,GO:0045451,GO:0045495,GO:0046011,GO:0046483,GO:0046907,GO:0046983,GO:0048468,GO:0048469,GO:0048477,GO:0048513,GO:0048519,GO:0048599,GO:0048609,GO:0048646,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0051028,GO:0051171,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051640,GO:0051641,GO:0051647,GO:0051649,GO:0051656,GO:0051663,GO:0051704,GO:0060255,GO:0060293,GO:0060810,GO:0060811,GO:0065007,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990904,GO:1990923,GO:2000112
Evalue9.16e-41
EggNOG OGsKOG2405@1|root,KOG2405@2759|Eukaryota
DescriptionpiRNA metabolic process
COG categoryS
BRITEko00000,ko03019
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11523Gvermi11523Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 724696..725517 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11523.t1.stop1Gvermi11523.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 724696..724698 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11523.t1.CDS1Gvermi11523.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 724696..725517 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11523.t1.exon1Gvermi11523.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 724696..725517 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11523.t1.start1Gvermi11523.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 725515..725517 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11523.t1Gvermi11523.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 724696..725517 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11523.t1 ID=Gvermi11523.t1|Name=Gvermi11523.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=274bp
LRYVCSVADCAAAVRALSAFKRVAVDCEGVALSRTGRLCLLQLASPHHVF
VVDLVSADPRHAALMFQHGGLKRLLENPDIHKVMHDCRHDSDALFHQFGV
KLGPVIDTQVVFAVLRTVRGMPKGLPVSLKTLLKKFTSVSEHHLCMKNAI
KSSMRGDDDFWLRRPLSPNALQYARLDVEHLLPVANLLSKYIHSADPAAW
PTVLSQSHFYLTVFRDDEHGPRKAQRQYEQMARVARRERLALDAAKRLDN
VRAADPLRNFTFDRALVLRAMQR*
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spliced messenger RNA

>Gvermi11523.t1 ID=Gvermi11523.t1|Name=Gvermi11523.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=822bp|location=Sequence derived from alignment at ScGOVlb_3404:724696..725517- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGCGCTACGTCTGCTCCGTCGCCGACTGCGCCGCCGCCGTGCGCGCCCT
CTCCGCCTTCAAGCGCGTCGCCGTCGACTGCGAGGGCGTCGCCCTGTCCA
GGACCGGCCGCCTGTGCCTGCTGCAACTCGCCTCCCCGCACCACGTCTTC
GTCGTCGACCTCGTGTCCGCCGACCCCCGCCACGCCGCCCTCATGTTTCA
GCACGGCGGGCTCAAGCGCCTGCTGGAGAACCCTGACATCCACAAGGTCA
TGCACGACTGCCGCCACGACTCTGACGCCCTGTTCCACCAGTTCGGCGTC
AAGCTGGGCCCGGTCATCGACACCCAGGTTGTTTTCGCCGTGCTGCGCAC
CGTCAGGGGCATGCCCAAGGGGCTCCCGGTCAGTCTCAAGACCCTGCTCA
AGAAGTTCACCTCCGTGTCCGAGCACCACCTCTGCATGAAGAACGCCATC
AAGTCCAGCATGCGCGGCGACGACGACTTCTGGCTGCGCCGCCCGCTGTC
GCCCAACGCCCTGCAGTACGCCCGCCTCGACGTCGAGCACCTGCTCCCCG
TCGCCAACCTGCTCTCCAAGTACATCCACTCCGCCGACCCTGCCGCCTGG
CCCACCGTCCTCTCCCAGTCCCACTTCTACCTCACCGTCTTCCGTGACGA
CGAGCACGGCCCGAGGAAGGCCCAACGCCAGTATGAGCAAATGGCCCGCG
TCGCCCGCCGCGAGCGCCTCGCCCTCGACGCCGCCAAGCGCTTGGACAAT
GTGCGCGCGGCAGACCCGCTGCGCAACTTCACCTTTGACCGCGCCCTCGT
GCTTCGCGCCATGCAGCGGTAG
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protein sequence of Gvermi11523.t1

>Gvermi11523.t1 ID=Gvermi11523.t1|Name=Gvermi11523.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=274bp
LRYVCSVADCAAAVRALSAFKRVAVDCEGVALSRTGRLCLLQLASPHHVF
VVDLVSADPRHAALMFQHGGLKRLLENPDIHKVMHDCRHDSDALFHQFGV
KLGPVIDTQVVFAVLRTVRGMPKGLPVSLKTLLKKFTSVSEHHLCMKNAI
KSSMRGDDDFWLRRPLSPNALQYARLDVEHLLPVANLLSKYIHSADPAAW
PTVLSQSHFYLTVFRDDEHGPRKAQRQYEQMARVARRERLALDAAKRLDN
VRAADPLRNFTFDRALVLRAMQR*
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mRNA from alignment at ScGOVlb_3404:724696..725517-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11523.t1 ID=Gvermi11523.t1|Name=Gvermi11523.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=822bp|location=Sequence derived from alignment at ScGOVlb_3404:724696..725517- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGCGCTACGTCTGCTCCGTCGCCGACTGCGCCGCCGCCGTGCGCGCCCT
CTCCGCCTTCAAGCGCGTCGCCGTCGACTGCGAGGGCGTCGCCCTGTCCA
GGACCGGCCGCCTGTGCCTGCTGCAACTCGCCTCCCCGCACCACGTCTTC
GTCGTCGACCTCGTGTCCGCCGACCCCCGCCACGCCGCCCTCATGTTTCA
GCACGGCGGGCTCAAGCGCCTGCTGGAGAACCCTGACATCCACAAGGTCA
TGCACGACTGCCGCCACGACTCTGACGCCCTGTTCCACCAGTTCGGCGTC
AAGCTGGGCCCGGTCATCGACACCCAGGTTGTTTTCGCCGTGCTGCGCAC
CGTCAGGGGCATGCCCAAGGGGCTCCCGGTCAGTCTCAAGACCCTGCTCA
AGAAGTTCACCTCCGTGTCCGAGCACCACCTCTGCATGAAGAACGCCATC
AAGTCCAGCATGCGCGGCGACGACGACTTCTGGCTGCGCCGCCCGCTGTC
GCCCAACGCCCTGCAGTACGCCCGCCTCGACGTCGAGCACCTGCTCCCCG
TCGCCAACCTGCTCTCCAAGTACATCCACTCCGCCGACCCTGCCGCCTGG
CCCACCGTCCTCTCCCAGTCCCACTTCTACCTCACCGTCTTCCGTGACGA
CGAGCACGGCCCGAGGAAGGCCCAACGCCAGTATGAGCAAATGGCCCGCG
TCGCCCGCCGCGAGCGCCTCGCCCTCGACGCCGCCAAGCGCTTGGACAAT
GTGCGCGCGGCAGACCCGCTGCGCAACTTCACCTTTGACCGCGCCCTCGT
GCTTCGCGCCATGCAGCGGTAG
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Coding sequence (CDS) from alignment at ScGOVlb_3404:724696..725517-

>Gvermi11523.t1 ID=Gvermi11523.t1|Name=Gvermi11523.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=822bp|location=Sequence derived from alignment at ScGOVlb_3404:724696..725517- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
CTGCGCTACGTCTGCTCCGTCGCCGACTGCGCCGCCGCCGTGCGCGCCCT
CTCCGCCTTCAAGCGCGTCGCCGTCGACTGCGAGGGCGTCGCCCTGTCCA
GGACCGGCCGCCTGTGCCTGCTGCAACTCGCCTCCCCGCACCACGTCTTC
GTCGTCGACCTCGTGTCCGCCGACCCCCGCCACGCCGCCCTCATGTTTCA
GCACGGCGGGCTCAAGCGCCTGCTGGAGAACCCTGACATCCACAAGGTCA
TGCACGACTGCCGCCACGACTCTGACGCCCTGTTCCACCAGTTCGGCGTC
AAGCTGGGCCCGGTCATCGACACCCAGGTTGTTTTCGCCGTGCTGCGCAC
CGTCAGGGGCATGCCCAAGGGGCTCCCGGTCAGTCTCAAGACCCTGCTCA
AGAAGTTCACCTCCGTGTCCGAGCACCACCTCTGCATGAAGAACGCCATC
AAGTCCAGCATGCGCGGCGACGACGACTTCTGGCTGCGCCGCCCGCTGTC
GCCCAACGCCCTGCAGTACGCCCGCCTCGACGTCGAGCACCTGCTCCCCG
TCGCCAACCTGCTCTCCAAGTACATCCACTCCGCCGACCCTGCCGCCTGG
CCCACCGTCCTCTCCCAGTCCCACTTCTACCTCACCGTCTTCCGTGACGA
CGAGCACGGCCCGAGGAAGGCCCAACGCCAGTATGAGCAAATGGCCCGCG
TCGCCCGCCGCGAGCGCCTCGCCCTCGACGCCGCCAAGCGCTTGGACAAT
GTGCGCGCGGCAGACCCGCTGCGCAACTTCACCTTTGACCGCGCCCTCGT
GCTTCGCGCCATGCAGCGGTAG
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