Gvermi11521.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11521.t1
Unique NameGvermi11521.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length244
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:678893..679730 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog157072.XP_008867190.1
Preferred nameJMJD7
PFAMsC2,Cupin_8,PLA2_B
Max annot lvl2759|Eukaryota
KEGG rclassRC00037,RC00094
KEGG koko:K16342,ko:K19219,ko:K20989
KEGG TC2.A.21.6
KEGG ReactionR01315,R01317,R02053,R07064,R07379,R07387,R07859
KEGG Pathwayko00564,ko00565,ko00590,ko00591,ko00592,ko01100,ko01110,ko04010,ko04014,ko04072,ko04217,ko04270,ko04370,ko04611,ko04664,ko04724,ko04726,ko04730,ko04750,ko04912,ko04913,ko04921,ko05231,map00564,map00565,map00590,map00591,map00592,map01100,map01110,map04010,map04014,map04072,map04217,map04270,map04370,map04611,map04664,map04724,map04726,map04730,map04750,map04912,map04913,map04921,map05231
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464
Evalue4.15e-39
EggNOG OGsCOG1226@1|root,KOG2508@2759|Eukaryota
EC3.1.1.4
DescriptionCupin-like domain
COG categoryP
BRITEko00000,ko00001,ko01000,ko02000,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11521Gvermi11521Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 678893..679730 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11521.t1Gvermi11521.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 678893..679730 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11521.t1.stop1Gvermi11521.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 678893..678895 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11521.t1.CDS1Gvermi11521.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 678893..679053 -
Gvermi11521.t1.CDS2Gvermi11521.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 679160..679730 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11521.t1.exon1Gvermi11521.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 678893..679053 -
Gvermi11521.t1.exon2Gvermi11521.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 679160..679730 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11521.t1.intron1Gvermi11521.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 679054..679159 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11521.t1.start1Gvermi11521.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 679728..679730 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11521.t1 ID=Gvermi11521.t1|Name=Gvermi11521.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=244bp
MLDALLSHKSHQTHGGCDCGYVPYYSAQNSSLVSDVPQLVEDIDQSLFQF
ACDAFNCVQPSVQNIWIGDGRSVSTTHSDPYENMYTVVTGTKIFELRPPC
DAAFLSKPSLQRARWEADESSKGNGHHCDVKNDSHSDRVLRPVTQFDGWK
LLKEEGETAWIDEDVISDKYADCLRVCLHAGDVLYIPALWYHRVSQRGIT
IAVNLWYEMGFGRDWIYRELCSGLQKARESEANERRVHLNITK*
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spliced messenger RNA

>Gvermi11521.t1 ID=Gvermi11521.t1|Name=Gvermi11521.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=732bp|location=Sequence derived from alignment at ScGOVlb_3404:678893..679730- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCGACGCTCTTCTATCGCACAAGTCTCATCAGACGCACGGGGGTTG
TGATTGTGGCTACGTTCCATACTATTCTGCCCAGAACTCTAGTCTGGTTT
CGGACGTGCCACAGTTGGTCGAGGACATTGACCAATCGTTGTTTCAGTTT
GCATGTGATGCTTTCAACTGTGTTCAACCGAGCGTGCAGAACATATGGAT
TGGAGATGGTCGATCTGTCTCAACTACGCACTCCGATCCTTATGAAAATA
TGTACACAGTTGTGACAGGGACGAAAATATTTGAGCTTCGCCCGCCTTGT
GACGCAGCGTTTTTGAGCAAGCCGTCTTTGCAAAGGGCAAGGTGGGAAGC
GGATGAAAGTTCGAAGGGCAATGGCCACCATTGCGATGTTAAGAATGATT
CTCATTCGGACCGGGTGCTGCGGCCCGTAACTCAATTTGATGGTTGGAAG
CTCCTAAAGGAAGAAGGAGAGACGGCTTGGATCGACGAAGATGTGATAAG
TGATAAGTACGCAGACTGTCTGCGAGTTTGTCTACATGCGGGTGATGTGT
TATACATTCCTGCTTTATGGTATCATCGTGTTTCTCAGCGAGGGATAACG
ATAGCAGTCAATCTTTGGTATGAGATGGGCTTTGGACGAGATTGGATATA
CAGAGAACTTTGTTCAGGCCTTCAGAAAGCTCGCGAGAGCGAAGCAAATG
AAAGAAGGGTACATTTAAACATAACAAAGTAA
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protein sequence of Gvermi11521.t1

>Gvermi11521.t1 ID=Gvermi11521.t1|Name=Gvermi11521.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=244bp
MLDALLSHKSHQTHGGCDCGYVPYYSAQNSSLVSDVPQLVEDIDQSLFQF
ACDAFNCVQPSVQNIWIGDGRSVSTTHSDPYENMYTVVTGTKIFELRPPC
DAAFLSKPSLQRARWEADESSKGNGHHCDVKNDSHSDRVLRPVTQFDGWK
LLKEEGETAWIDEDVISDKYADCLRVCLHAGDVLYIPALWYHRVSQRGIT
IAVNLWYEMGFGRDWIYRELCSGLQKARESEANERRVHLNITK*
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mRNA from alignment at ScGOVlb_3404:678893..679730-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11521.t1 ID=Gvermi11521.t1|Name=Gvermi11521.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=838bp|location=Sequence derived from alignment at ScGOVlb_3404:678893..679730- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTCGACGCTCTTCTATCGCACAAGTCTCATCAGACGCACGGGGGTTG
TGATTGTGGCTACGTTCCATACTATTCTGCCCAGAACTCTAGTCTGGTTT
CGGACGTGCCACAGTTGGTCGAGGACATTGACCAATCGTTGTTTCAGTTT
GCATGTGATGCTTTCAACTGTGTTCAACCGAGCGTGCAGAACATATGGAT
TGGAGATGGTCGATCTGTCTCAACTACGCACTCCGATCCTTATGAAAATA
TGTACACAGTTGTGACAGGGACGAAAATATTTGAGCTTCGCCCGCCTTGT
GACGCAGCGTTTTTGAGCAAGCCGTCTTTGCAAAGGGCAAGGTGGGAAGC
GGATGAAAGTTCGAAGGGCAATGGCCACCATTGCGATGTTAAGAATGATT
CTCATTCGGACCGGGTGCTGCGGCCCGTAACTCAATTTGATGGTTGGAAG
CTCCTAAAGGAAGAAGGAGAGACGGCTTGGATCGACGAAGATGTGATAAG
TGATAAGTACGCAGACTGTCTGCGAGTTTGTCTACATGCGGGTGATGTGT
TATACATTCCTGCTTTATGGTGTACGTTGAACGCAAAGACCCTACTTTTC
TGATTTTGCTTAATTCGATTTCAGTTTATCATTAACATGTTACTTCTTGT
TTCTTTTTTGTGTGTGTTTTGGCAAAGATCATCGTGTTTCTCAGCGAGGG
ATAACGATAGCAGTCAATCTTTGGTATGAGATGGGCTTTGGACGAGATTG
GATATACAGAGAACTTTGTTCAGGCCTTCAGAAAGCTCGCGAGAGCGAAG
CAAATGAAAGAAGGGTACATTTAAACATAACAAAGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_3404:678893..679730-

>Gvermi11521.t1 ID=Gvermi11521.t1|Name=Gvermi11521.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=732bp|location=Sequence derived from alignment at ScGOVlb_3404:678893..679730- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGCTCGACGCTCTTCTATCGCACAAGTCTCATCAGACGCACGGGGGTTG
TGATTGTGGCTACGTTCCATACTATTCTGCCCAGAACTCTAGTCTGGTTT
CGGACGTGCCACAGTTGGTCGAGGACATTGACCAATCGTTGTTTCAGTTT
GCATGTGATGCTTTCAACTGTGTTCAACCGAGCGTGCAGAACATATGGAT
TGGAGATGGTCGATCTGTCTCAACTACGCACTCCGATCCTTATGAAAATA
TGTACACAGTTGTGACAGGGACGAAAATATTTGAGCTTCGCCCGCCTTGT
GACGCAGCGTTTTTGAGCAAGCCGTCTTTGCAAAGGGCAAGGTGGGAAGC
GGATGAAAGTTCGAAGGGCAATGGCCACCATTGCGATGTTAAGAATGATT
CTCATTCGGACCGGGTGCTGCGGCCCGTAACTCAATTTGATGGTTGGAAG
CTCCTAAAGGAAGAAGGAGAGACGGCTTGGATCGACGAAGATGTGATAAG
TGATAAGTACGCAGACTGTCTGCGAGTTTGTCTACATGCGGGTGATGTGT
TATACATTCCTGCTTTATGGTATCATCGTGTTTCTCAGCGAGGGATAACG
ATAGCAGTCAATCTTTGGTATGAGATGGGCTTTGGACGAGATTGGATATA
CAGAGAACTTTGTTCAGGCCTTCAGAAAGCTCGCGAGAGCGAAGCAAATG
AAAGAAGGGTACATTTAAACATAACAAAGTAA
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