Gvermi11519.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi11519.t1
Unique NameGvermi11519.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length91
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_3404contigScGOVlb_3404:676106..676598 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi11519Gvermi11519Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_3404 676106..676598 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11519.t1Gvermi11519.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_3404 676106..676598 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11519.t1.stop1Gvermi11519.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_3404 676106..676108 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11519.t1.CDS1Gvermi11519.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 676106..676123 -
Gvermi11519.t1.CDS2Gvermi11519.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 676250..676439 -
Gvermi11519.t1.CDS3Gvermi11519.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_3404 676534..676598 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11519.t1.exon1Gvermi11519.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 676106..676123 -
Gvermi11519.t1.exon2Gvermi11519.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 676250..676439 -
Gvermi11519.t1.exon3Gvermi11519.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_3404 676534..676598 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11519.t1.intron1Gvermi11519.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 676124..676249 -
Gvermi11519.t1.intron2Gvermi11519.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_3404 676440..676533 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi11519.t1.start1Gvermi11519.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_3404 676596..676598 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi11519.t1 ID=Gvermi11519.t1|Name=Gvermi11519.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=91bp
MEKTDGRNGHRSAARRAELLPSYTSICDGLLFLFFGMSGYLRNLLHIDEM
CCCSVVFGTVGWVFFSQSVCHEHHGTNASKRLELQWANML*
back to top

spliced messenger RNA

>Gvermi11519.t1 ID=Gvermi11519.t1|Name=Gvermi11519.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=273bp|location=Sequence derived from alignment at ScGOVlb_3404:676106..676598- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGAAAACAGATGGTCGAAACGGGCACCGTTCTGCGGCGCGACGAGC
AGAGTTGCTGCCAAGCTACACGAGCATTTGCGACGGGTTGTTGTTCCTTT
TCTTTGGCATGTCGGGCTACCTACGTAATTTACTACACATTGATGAGATG
TGCTGTTGTTCTGTTGTGTTCGGAACTGTTGGTTGGGTCTTTTTTTCACA
GAGCGTTTGTCATGAACATCATGGCACGAACGCGTCTAAGCGATTGGAAC
TACAATGGGCAAACATGTTGTAA
back to top

protein sequence of Gvermi11519.t1

>Gvermi11519.t1 ID=Gvermi11519.t1|Name=Gvermi11519.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=91bp
MEKTDGRNGHRSAARRAELLPSYTSICDGLLFLFFGMSGYLRNLLHIDEM
CCCSVVFGTVGWVFFSQSVCHEHHGTNASKRLELQWANML*
back to top

mRNA from alignment at ScGOVlb_3404:676106..676598-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi11519.t1 ID=Gvermi11519.t1|Name=Gvermi11519.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=493bp|location=Sequence derived from alignment at ScGOVlb_3404:676106..676598- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGAAAACAGATGGTCGAAACGGGCACCGTTCTGCGGCGCGACGAGC
AGAGTTGCTGCCAAGGTAAGTTCAAAAGGCAATGTGAGGCATGAAAGGTT
GCGGTTTACATGCGCTTCCACCCTTCCAACCACTTTGTTTTGCGACGATT
GATTGCGAGCTACACGAGCATTTGCGACGGGTTGTTGTTCCTTTTCTTTG
GCATGTCGGGCTACCTACGTAATTTACTACACATTGATGAGATGTGCTGT
TGTTCTGTTGTGTTCGGAACTGTTGGTTGGGTCTTTTTTTCACAGAGCGT
TTGTCATGAACATCATGGCACGAACGCGTCTAAGCGATTGGAACTACAAG
TGAGTGTGCCATTCGTCGCCATCAAGGCGTCCATGGATGCGCACATTTGA
AGGACGCGCATGTTTGAGCGCATGACGAGTAGATGCATGCACGTGCTAAA
TGTTTTGTATGCTTCCTTGACGCAGTGGGCAAACATGTTGTAA
back to top

Coding sequence (CDS) from alignment at ScGOVlb_3404:676106..676598-

>Gvermi11519.t1 ID=Gvermi11519.t1|Name=Gvermi11519.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=273bp|location=Sequence derived from alignment at ScGOVlb_3404:676106..676598- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGAGAAAACAGATGGTCGAAACGGGCACCGTTCTGCGGCGCGACGAGC
AGAGTTGCTGCCAAGCTACACGAGCATTTGCGACGGGTTGTTGTTCCTTT
TCTTTGGCATGTCGGGCTACCTACGTAATTTACTACACATTGATGAGATG
TGCTGTTGTTCTGTTGTGTTCGGAACTGTTGGTTGGGTCTTTTTTTCACA
GAGCGTTTGTCATGAACATCATGGCACGAACGCGTCTAAGCGATTGGAAC
TACAATGGGCAAACATGTTGTAA
back to top