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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gvermi11516.t2 ID=Gvermi11516.t2|Name=Gvermi11516.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=904bp MLVVNNAQPPSHSAAAHDAHQSPPVARKRPPTPVSDIPKRARCGRRPDVK QDAFPSWLQEAAAAFVNSTPSLNWTGGFYSWGTWLDTLRDQSLWGSNRGN QPPWRQLVDACRKSGQVCGTAALYRAKNDLVSAIINLVYRKGETNRLSIA QQKPAVERDIMRRVRAVVTRQRRHEAASLTLIRYLDLAFVFSAYKDCRLA QHGKESESFAQINRQVEDELNFLQTSPNAKHIGAVTQRMESYMWQHRWLP WYEQMPHMKDEMLISAREAANAFCNGLPCPKFGVGTGVRGLSRDHLAGAG IMDEWLTTLFDESISPRWKSLAEAYEEATKDWRGEESKLLEEISRRVIEK ILEPLTEMNESLESDNCKLVDATPGIVVTQSAKIRGRFTFRLLVELQVHL VMLCEYLHKKFHGRMLPSIEDIHPGVLLYEELSRRIAEVRTHLDDDKAEL LILSCLRTPELHGAHTHPSREALQSCKDYQTAAIKAALGPAIMLGCKTPD ETVETESVAESDPLIFAAIISEWDPMLAARIVDAAVRIGKNTREQFHNGS GCGLDMYTHRRVLVCDAAIDRCHGDQRAAAHIMMRLGPVWDACVDDKQVG SITLDGLVLLKLAVERGNFEAATAFGNFIGEEQWEIHRKTCGVDRNNEIA INYLCRALTVGDVGAARSLIHLLCSRNHSSSESEIQETRFSPELVKKARE SLEVAARDVPAISLFLGYFYSVGATGLDIDCNSALECYKRVLLSNKVNTH FKAHAANNIAVLKALHCNPCDVEHDDVNVSHYLRMAAAATNPKAEANLAA LTTVKTNAGDPDLRRAVEMYRRIFHCSAKGSLVTVIQIPEEEELQMTVTE IDVDKDKQELFCQDLKTQGMDLEKYGKVMVQETIQYTMANREGADADKKK PSL* back to topspliced messenger RNA >Gvermi11516.t2 ID=Gvermi11516.t2|Name=Gvermi11516.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2712bp|location=Sequence derived from alignment at ScGOVlb_3404:658502..661213- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.
ATGCTGGTGGTAAACAATGCCCAGCCGCCCTCGCACTCTGCCGCCGCTCA CGATGCCCACCAATCCCCCCCCGTGGCGCGAAAGAGACCCCCCACTCCGG TCTCTGACATCCCCAAGCGAGCCCGCTGTGGCCGTCGACCTGATGTCAAG CAAGACGCCTTTCCATCTTGGCTTCAAGAAGCCGCCGCTGCCTTCGTCAA CTCCACGCCCTCTCTCAACTGGACAGGTGGATTCTACAGCTGGGGGACAT GGCTTGACACTCTACGCGACCAATCTCTTTGGGGCTCCAATCGTGGAAAC CAGCCGCCGTGGCGGCAACTCGTTGATGCTTGCCGAAAATCCGGACAAGT TTGCGGAACAGCTGCCCTCTATCGTGCCAAAAACGATCTGGTCTCGGCTA TTATCAACCTCGTTTACCGAAAAGGCGAGACGAACAGGCTCTCTATAGCG CAGCAAAAACCTGCCGTAGAGCGCGATATCATGCGCCGTGTGAGAGCTGT TGTCACCAGACAGAGAAGGCACGAAGCGGCCTCCCTCACGCTTATTCGAT ATCTAGACCTTGCGTTCGTGTTCTCGGCTTATAAGGATTGCCGCCTTGCC CAACACGGGAAGGAGTCAGAATCCTTCGCCCAGATCAATAGACAAGTTGA AGACGAATTAAACTTTCTTCAGACAAGCCCTAACGCAAAGCACATAGGAG CCGTCACGCAACGCATGGAGTCTTACATGTGGCAACATCGATGGTTGCCC TGGTATGAGCAAATGCCTCACATGAAAGATGAAATGCTCATCAGTGCCCG AGAAGCCGCAAACGCATTTTGTAACGGCCTGCCTTGCCCAAAGTTTGGAG TTGGCACAGGTGTGCGCGGCCTGTCGCGGGATCATCTCGCTGGCGCTGGG ATTATGGACGAATGGTTAACCACTCTCTTTGACGAGTCCATCTCGCCGCG ATGGAAGAGTTTGGCTGAGGCATACGAAGAAGCAACAAAAGACTGGCGAG GTGAAGAGAGTAAACTATTGGAAGAGATATCCCGTCGCGTCATCGAGAAA ATACTCGAGCCCCTCACGGAGATGAATGAAAGCTTGGAATCCGACAATTG CAAGCTAGTAGATGCCACCCCAGGCATTGTTGTCACACAGTCTGCAAAAA TCCGAGGGAGATTCACGTTCCGGCTTCTTGTAGAATTGCAGGTTCATCTT GTTATGCTCTGCGAGTATCTGCACAAGAAATTCCATGGTCGTATGCTACC CTCTATTGAAGATATCCATCCAGGAGTGCTTCTATATGAAGAATTAAGTC GGAGAATCGCCGAAGTTCGCACCCACTTGGACGACGACAAGGCGGAGCTT CTCATACTGTCATGCCTTAGAACCCCCGAACTTCATGGTGCACATACACA CCCTTCCAGAGAAGCTCTTCAGAGCTGTAAGGATTACCAAACGGCAGCAA TCAAGGCCGCTCTTGGGCCTGCCATCATGCTCGGATGCAAGACTCCAGAC GAGACTGTGGAGACTGAATCTGTGGCCGAAAGCGACCCGTTGATATTTGC TGCGATCATTTCCGAATGGGATCCTATGCTTGCTGCGAGAATTGTGGACG CTGCGGTTCGCATAGGAAAGAATACTAGAGAACAATTCCATAACGGCAGC GGATGCGGCCTTGATATGTACACCCACCGGAGAGTGCTGGTTTGTGATGC AGCAATAGACCGATGTCACGGCGATCAGCGTGCTGCTGCGCACATCATGA TGAGATTAGGGCCAGTGTGGGATGCTTGTGTCGACGACAAGCAAGTAGGG TCGATAACTCTGGACGGCTTGGTTCTTTTGAAGTTAGCCGTTGAACGAGG GAATTTTGAAGCAGCGACTGCGTTCGGGAATTTCATTGGAGAAGAACAAT GGGAGATCCATCGCAAAACTTGTGGCGTTGACCGTAACAATGAAATCGCA ATCAACTATCTTTGCAGAGCATTAACGGTTGGTGACGTGGGCGCTGCTCG AAGCTTAATTCATCTTTTGTGCTCTCGAAACCATTCCAGCTCCGAATCTG AAATTCAAGAAACGCGCTTTTCCCCGGAACTTGTGAAAAAGGCACGCGAG AGTCTTGAAGTTGCAGCCAGAGATGTTCCCGCGATCTCCCTATTCTTGGG CTACTTCTATTCTGTGGGAGCCACGGGGTTGGACATTGATTGCAATTCTG CATTGGAATGCTACAAAAGGGTGCTGCTTTCCAACAAGGTAAACACTCAC TTCAAAGCGCATGCTGCGAACAATATCGCTGTGTTAAAAGCGCTTCATTG CAACCCATGCGATGTTGAACACGACGACGTCAATGTAAGCCATTATCTTC GCATGGCCGCAGCGGCTACCAATCCCAAAGCAGAGGCTAATCTCGCCGCT CTGACCACAGTGAAGACAAATGCGGGTGATCCTGACTTGAGAAGAGCGGT AGAAATGTACCGACGAATTTTCCACTGTTCTGCAAAAGGATCTCTCGTGA CGGTGATTCAGATCCCTGAGGAGGAAGAGTTGCAGATGACCGTTACCGAG ATAGACGTGGATAAGGACAAACAAGAATTGTTTTGCCAAGATCTGAAAAC GCAAGGAATGGACCTCGAGAAGTACGGGAAGGTGATGGTCCAAGAAACTA TTCAATACACAATGGCGAACCGGGAAGGAGCTGATGCTGATAAAAAGAAG CCTTCCTTGTGA back to topprotein sequence of Gvermi11516.t2 >Gvermi11516.t2 ID=Gvermi11516.t2|Name=Gvermi11516.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=904bp
MLVVNNAQPPSHSAAAHDAHQSPPVARKRPPTPVSDIPKRARCGRRPDVK QDAFPSWLQEAAAAFVNSTPSLNWTGGFYSWGTWLDTLRDQSLWGSNRGN QPPWRQLVDACRKSGQVCGTAALYRAKNDLVSAIINLVYRKGETNRLSIA QQKPAVERDIMRRVRAVVTRQRRHEAASLTLIRYLDLAFVFSAYKDCRLA QHGKESESFAQINRQVEDELNFLQTSPNAKHIGAVTQRMESYMWQHRWLP WYEQMPHMKDEMLISAREAANAFCNGLPCPKFGVGTGVRGLSRDHLAGAG IMDEWLTTLFDESISPRWKSLAEAYEEATKDWRGEESKLLEEISRRVIEK ILEPLTEMNESLESDNCKLVDATPGIVVTQSAKIRGRFTFRLLVELQVHL VMLCEYLHKKFHGRMLPSIEDIHPGVLLYEELSRRIAEVRTHLDDDKAEL LILSCLRTPELHGAHTHPSREALQSCKDYQTAAIKAALGPAIMLGCKTPD ETVETESVAESDPLIFAAIISEWDPMLAARIVDAAVRIGKNTREQFHNGS GCGLDMYTHRRVLVCDAAIDRCHGDQRAAAHIMMRLGPVWDACVDDKQVG SITLDGLVLLKLAVERGNFEAATAFGNFIGEEQWEIHRKTCGVDRNNEIA INYLCRALTVGDVGAARSLIHLLCSRNHSSSESEIQETRFSPELVKKARE SLEVAARDVPAISLFLGYFYSVGATGLDIDCNSALECYKRVLLSNKVNTH FKAHAANNIAVLKALHCNPCDVEHDDVNVSHYLRMAAAATNPKAEANLAA LTTVKTNAGDPDLRRAVEMYRRIFHCSAKGSLVTVIQIPEEEELQMTVTE IDVDKDKQELFCQDLKTQGMDLEKYGKVMVQETIQYTMANREGADADKKK PSL* back to topmRNA from alignment at ScGOVlb_3404:658502..661213- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gvermi11516.t2 ID=Gvermi11516.t2|Name=Gvermi11516.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=2712bp|location=Sequence derived from alignment at ScGOVlb_3404:658502..661213- (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGCTGGTGGTAAACAATGCCCAGCCGCCCTCGCACTCTGCCGCCGCTCA
CGATGCCCACCAATCCCCCCCCGTGGCGCGAAAGAGACCCCCCACTCCGG
TCTCTGACATCCCCAAGCGAGCCCGCTGTGGCCGTCGACCTGATGTCAAG
CAAGACGCCTTTCCATCTTGGCTTCAAGAAGCCGCCGCTGCCTTCGTCAA
CTCCACGCCCTCTCTCAACTGGACAGGTGGATTCTACAGCTGGGGGACAT
GGCTTGACACTCTACGCGACCAATCTCTTTGGGGCTCCAATCGTGGAAAC
CAGCCGCCGTGGCGGCAACTCGTTGATGCTTGCCGAAAATCCGGACAAGT
TTGCGGAACAGCTGCCCTCTATCGTGCCAAAAACGATCTGGTCTCGGCTA
TTATCAACCTCGTTTACCGAAAAGGCGAGACGAACAGGCTCTCTATAGCG
CAGCAAAAACCTGCCGTAGAGCGCGATATCATGCGCCGTGTGAGAGCTGT
TGTCACCAGACAGAGAAGGCACGAAGCGGCCTCCCTCACGCTTATTCGAT
ATCTAGACCTTGCGTTCGTGTTCTCGGCTTATAAGGATTGCCGCCTTGCC
CAACACGGGAAGGAGTCAGAATCCTTCGCCCAGATCAATAGACAAGTTGA
AGACGAATTAAACTTTCTTCAGACAAGCCCTAACGCAAAGCACATAGGAG
CCGTCACGCAACGCATGGAGTCTTACATGTGGCAACATCGATGGTTGCCC
TGGTATGAGCAAATGCCTCACATGAAAGATGAAATGCTCATCAGTGCCCG
AGAAGCCGCAAACGCATTTTGTAACGGCCTGCCTTGCCCAAAGTTTGGAG
TTGGCACAGGTGTGCGCGGCCTGTCGCGGGATCATCTCGCTGGCGCTGGG
ATTATGGACGAATGGTTAACCACTCTCTTTGACGAGTCCATCTCGCCGCG
ATGGAAGAGTTTGGCTGAGGCATACGAAGAAGCAACAAAAGACTGGCGAG
GTGAAGAGAGTAAACTATTGGAAGAGATATCCCGTCGCGTCATCGAGAAA
ATACTCGAGCCCCTCACGGAGATGAATGAAAGCTTGGAATCCGACAATTG
CAAGCTAGTAGATGCCACCCCAGGCATTGTTGTCACACAGTCTGCAAAAA
TCCGAGGGAGATTCACGTTCCGGCTTCTTGTAGAATTGCAGGTTCATCTT
GTTATGCTCTGCGAGTATCTGCACAAGAAATTCCATGGTCGTATGCTACC
CTCTATTGAAGATATCCATCCAGGAGTGCTTCTATATGAAGAATTAAGTC
GGAGAATCGCCGAAGTTCGCACCCACTTGGACGACGACAAGGCGGAGCTT
CTCATACTGTCATGCCTTAGAACCCCCGAACTTCATGGTGCACATACACA
CCCTTCCAGAGAAGCTCTTCAGAGCTGTAAGGATTACCAAACGGCAGCAA
TCAAGGCCGCTCTTGGGCCTGCCATCATGCTCGGATGCAAGACTCCAGAC
GAGACTGTGGAGACTGAATCTGTGGCCGAAAGCGACCCGTTGATATTTGC
TGCGATCATTTCCGAATGGGATCCTATGCTTGCTGCGAGAATTGTGGACG
CTGCGGTTCGCATAGGAAAGAATACTAGAGAACAATTCCATAACGGCAGC
GGATGCGGCCTTGATATGTACACCCACCGGAGAGTGCTGGTTTGTGATGC
AGCAATAGACCGATGTCACGGCGATCAGCGTGCTGCTGCGCACATCATGA
TGAGATTAGGGCCAGTGTGGGATGCTTGTGTCGACGACAAGCAAGTAGGG
TCGATAACTCTGGACGGCTTGGTTCTTTTGAAGTTAGCCGTTGAACGAGG
GAATTTTGAAGCAGCGACTGCGTTCGGGAATTTCATTGGAGAAGAACAAT
GGGAGATCCATCGCAAAACTTGTGGCGTTGACCGTAACAATGAAATCGCA
ATCAACTATCTTTGCAGAGCATTAACGGTTGGTGACGTGGGCGCTGCTCG
AAGCTTAATTCATCTTTTGTGCTCTCGAAACCATTCCAGCTCCGAATCTG
AAATTCAAGAAACGCGCTTTTCCCCGGAACTTGTGAAAAAGGCACGCGAG
AGTCTTGAAGTTGCAGCCAGAGATGTTCCCGCGATCTCCCTATTCTTGGG
CTACTTCTATTCTGTGGGAGCCACGGGGTTGGACATTGATTGCAATTCTG
CATTGGAATGCTACAAAAGGGTGCTGCTTTCCAACAAGGTAAACACTCAC
TTCAAAGCGCATGCTGCGAACAATATCGCTGTGTTAAAAGCGCTTCATTG
CAACCCATGCGATGTTGAACACGACGACGTCAATGTAAGCCATTATCTTC
GCATGGCCGCAGCGGCTACCAATCCCAAAGCAGAGGCTAATCTCGCCGCT
CTGACCACAGTGAAGACAAATGCGGGTGATCCTGACTTGAGAAGAGCGGT
AGAAATGTACCGACGAATTTTCCACTGTTCTGCAAAAGGATCTCTCGTGA
CGGTGATTCAGATCCCTGAGGAGGAAGAGTTGCAGATGACCGTTACCGAG
ATAGACGTGGATAAGGACAAACAAGAATTGTTTTGCCAAGATCTGAAAAC
GCAAGGAATGGACCTCGAGAAGTACGGGAAGGTGATGGTCCAAGAAACTA
TTCAATACACAATGGCGAACCGGGAAGGAGCTGATGCTGATAAAAAGAAG
CCTTCCTTGTGA back to topCoding sequence (CDS) from alignment at ScGOVlb_3404:658502..661213- >Gvermi11516.t2 ID=Gvermi11516.t2|Name=Gvermi11516.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=2712bp|location=Sequence derived from alignment at ScGOVlb_3404:658502..661213- (Gracilaria vermiculophylla HapMaleFtJ_2017 male) ATGCTGGTGGTAAACAATGCCCAGCCGCCCTCGCACTCTGCCGCCGCTCA CGATGCCCACCAATCCCCCCCCGTGGCGCGAAAGAGACCCCCCACTCCGG TCTCTGACATCCCCAAGCGAGCCCGCTGTGGCCGTCGACCTGATGTCAAG CAAGACGCCTTTCCATCTTGGCTTCAAGAAGCCGCCGCTGCCTTCGTCAA CTCCACGCCCTCTCTCAACTGGACAGGTGGATTCTACAGCTGGGGGACAT GGCTTGACACTCTACGCGACCAATCTCTTTGGGGCTCCAATCGTGGAAAC CAGCCGCCGTGGCGGCAACTCGTTGATGCTTGCCGAAAATCCGGACAAGT TTGCGGAACAGCTGCCCTCTATCGTGCCAAAAACGATCTGGTCTCGGCTA TTATCAACCTCGTTTACCGAAAAGGCGAGACGAACAGGCTCTCTATAGCG CAGCAAAAACCTGCCGTAGAGCGCGATATCATGCGCCGTGTGAGAGCTGT TGTCACCAGACAGAGAAGGCACGAAGCGGCCTCCCTCACGCTTATTCGAT ATCTAGACCTTGCGTTCGTGTTCTCGGCTTATAAGGATTGCCGCCTTGCC CAACACGGGAAGGAGTCAGAATCCTTCGCCCAGATCAATAGACAAGTTGA AGACGAATTAAACTTTCTTCAGACAAGCCCTAACGCAAAGCACATAGGAG CCGTCACGCAACGCATGGAGTCTTACATGTGGCAACATCGATGGTTGCCC TGGTATGAGCAAATGCCTCACATGAAAGATGAAATGCTCATCAGTGCCCG AGAAGCCGCAAACGCATTTTGTAACGGCCTGCCTTGCCCAAAGTTTGGAG TTGGCACAGGTGTGCGCGGCCTGTCGCGGGATCATCTCGCTGGCGCTGGG ATTATGGACGAATGGTTAACCACTCTCTTTGACGAGTCCATCTCGCCGCG ATGGAAGAGTTTGGCTGAGGCATACGAAGAAGCAACAAAAGACTGGCGAG GTGAAGAGAGTAAACTATTGGAAGAGATATCCCGTCGCGTCATCGAGAAA ATACTCGAGCCCCTCACGGAGATGAATGAAAGCTTGGAATCCGACAATTG CAAGCTAGTAGATGCCACCCCAGGCATTGTTGTCACACAGTCTGCAAAAA TCCGAGGGAGATTCACGTTCCGGCTTCTTGTAGAATTGCAGGTTCATCTT GTTATGCTCTGCGAGTATCTGCACAAGAAATTCCATGGTCGTATGCTACC CTCTATTGAAGATATCCATCCAGGAGTGCTTCTATATGAAGAATTAAGTC GGAGAATCGCCGAAGTTCGCACCCACTTGGACGACGACAAGGCGGAGCTT CTCATACTGTCATGCCTTAGAACCCCCGAACTTCATGGTGCACATACACA CCCTTCCAGAGAAGCTCTTCAGAGCTGTAAGGATTACCAAACGGCAGCAA TCAAGGCCGCTCTTGGGCCTGCCATCATGCTCGGATGCAAGACTCCAGAC GAGACTGTGGAGACTGAATCTGTGGCCGAAAGCGACCCGTTGATATTTGC TGCGATCATTTCCGAATGGGATCCTATGCTTGCTGCGAGAATTGTGGACG CTGCGGTTCGCATAGGAAAGAATACTAGAGAACAATTCCATAACGGCAGC GGATGCGGCCTTGATATGTACACCCACCGGAGAGTGCTGGTTTGTGATGC AGCAATAGACCGATGTCACGGCGATCAGCGTGCTGCTGCGCACATCATGA TGAGATTAGGGCCAGTGTGGGATGCTTGTGTCGACGACAAGCAAGTAGGG TCGATAACTCTGGACGGCTTGGTTCTTTTGAAGTTAGCCGTTGAACGAGG GAATTTTGAAGCAGCGACTGCGTTCGGGAATTTCATTGGAGAAGAACAAT GGGAGATCCATCGCAAAACTTGTGGCGTTGACCGTAACAATGAAATCGCA ATCAACTATCTTTGCAGAGCATTAACGGTTGGTGACGTGGGCGCTGCTCG AAGCTTAATTCATCTTTTGTGCTCTCGAAACCATTCCAGCTCCGAATCTG AAATTCAAGAAACGCGCTTTTCCCCGGAACTTGTGAAAAAGGCACGCGAG AGTCTTGAAGTTGCAGCCAGAGATGTTCCCGCGATCTCCCTATTCTTGGG CTACTTCTATTCTGTGGGAGCCACGGGGTTGGACATTGATTGCAATTCTG CATTGGAATGCTACAAAAGGGTGCTGCTTTCCAACAAGGTAAACACTCAC TTCAAAGCGCATGCTGCGAACAATATCGCTGTGTTAAAAGCGCTTCATTG CAACCCATGCGATGTTGAACACGACGACGTCAATGTAAGCCATTATCTTC GCATGGCCGCAGCGGCTACCAATCCCAAAGCAGAGGCTAATCTCGCCGCT CTGACCACAGTGAAGACAAATGCGGGTGATCCTGACTTGAGAAGAGCGGT AGAAATGTACCGACGAATTTTCCACTGTTCTGCAAAAGGATCTCTCGTGA CGGTGATTCAGATCCCTGAGGAGGAAGAGTTGCAGATGACCGTTACCGAG ATAGACGTGGATAAGGACAAACAAGAATTGTTTTGCCAAGATCTGAAAAC GCAAGGAATGGACCTCGAGAAGTACGGGAAGGTGATGGTCCAAGAAACTA TTCAATACACAATGGCGAACCGGGAAGGAGCTGATGCTGATAAAAAGAAG CCTTCCTTGTGA back to top
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