Ggra10820.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10820.t1
Unique NameGgra10820.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length126
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000192_piloncontigtig00000192_pilon:99200..99577 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog110365.A0A023AYS6
PFAMsArsA_ATPase
Max annot lvl5794|Apicomplexa
KEGG koko:K01551
KEGG TC3.A.19.1,3.A.21.1,3.A.4.1
Evalue7.23e-22
EggNOG OGsCOG0003@1|root,KOG2825@2759|Eukaryota,3Y9KX@5794|Apicomplexa
EC3.6.3.16
DescriptionATPase required for the post-translational delivery of tail-anchored (TA) proteins to the endoplasmic reticulum. Recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol. This complex then targets to the endoplasmic reticulum by membrane-bound receptors, where the tail- anchored protein is released for insertion. This process is regulated by ATP binding and hydrolysis. ATP binding drives the homodimer towards the closed dimer state, facilitating recognition of newly synthesized TA membrane proteins. ATP hydrolysis is required for insertion. Subsequently, the homodimer reverts towards the open dimer state, lowering its affinity for the membrane-bound receptor, and returning it to the cytosol to initiate a new round of targeting
COG categoryP
BRITEko00000,ko01000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10820Ggra10820Gracilaria gracilis GNS1m malegenetig00000192_pilon 99200..99577 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10820.t1.stop1Ggra10820.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000192_pilon 99200..99202 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10820.t1.CDS1Ggra10820.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000192_pilon 99200..99577 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10820.t1.exon1Ggra10820.t1.exon1Gracilaria gracilis GNS1m maleexontig00000192_pilon 99200..99577 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10820.t1.start1Ggra10820.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000192_pilon 99575..99577 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10820.t1Ggra10820.t1Gracilaria gracilis GNS1m malepolypeptidetig00000192_pilon 99200..99577 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10820.t1 ID=Ggra10820.t1|Name=Ggra10820.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=126bp
MAKLTEASEGLSEGPGLSRLLPIDTIREMLPSVPEVDEAVSFSQISKLAK
TMEFDVIVFDTAPTGHTLRLLGFPQVADKALSKFDEMRQRLNPLMSMFTG
GDPSVQEKIQQLEDQLAAVKKDTAT*
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spliced messenger RNA

>Ggra10820.t1 ID=Ggra10820.t1|Name=Ggra10820.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=378bp|location=Sequence derived from alignment at tig00000192_pilon:99200..99577- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCAAACTTACAGAGGCTTCAGAAGGTCTTTCCGAAGGACCAGGTCT
GTCTCGCTTGCTGCCAATTGACACCATTCGAGAGATGCTTCCTTCAGTTC
CTGAGGTCGACGAAGCCGTTTCATTCTCACAGATTTCAAAGCTCGCAAAA
ACTATGGAATTTGATGTGATCGTCTTTGATACTGCACCAACAGGTCATAC
ACTACGGCTTCTTGGTTTCCCACAAGTAGCAGACAAGGCACTTTCCAAGT
TTGACGAAATGCGCCAACGATTGAATCCACTAATGTCTATGTTTACTGGC
GGAGATCCATCTGTGCAAGAGAAGATACAGCAACTTGAAGATCAGCTTGC
CGCTGTAAAGAAAGATACAGCAACTTGA
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protein sequence of Ggra10820.t1

>Ggra10820.t1 ID=Ggra10820.t1|Name=Ggra10820.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=126bp
MAKLTEASEGLSEGPGLSRLLPIDTIREMLPSVPEVDEAVSFSQISKLAK
TMEFDVIVFDTAPTGHTLRLLGFPQVADKALSKFDEMRQRLNPLMSMFTG
GDPSVQEKIQQLEDQLAAVKKDTAT*
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mRNA from alignment at tig00000192_pilon:99200..99577-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10820.t1 ID=Ggra10820.t1|Name=Ggra10820.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=378bp|location=Sequence derived from alignment at tig00000192_pilon:99200..99577- (Gracilaria gracilis GNS1m male)
ATGGCCAAACTTACAGAGGCTTCAGAAGGTCTTTCCGAAGGACCAGGTCT
GTCTCGCTTGCTGCCAATTGACACCATTCGAGAGATGCTTCCTTCAGTTC
CTGAGGTCGACGAAGCCGTTTCATTCTCACAGATTTCAAAGCTCGCAAAA
ACTATGGAATTTGATGTGATCGTCTTTGATACTGCACCAACAGGTCATAC
ACTACGGCTTCTTGGTTTCCCACAAGTAGCAGACAAGGCACTTTCCAAGT
TTGACGAAATGCGCCAACGATTGAATCCACTAATGTCTATGTTTACTGGC
GGAGATCCATCTGTGCAAGAGAAGATACAGCAACTTGAAGATCAGCTTGC
CGCTGTAAAGAAAGATACAGCAACTTGA
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Coding sequence (CDS) from alignment at tig00000192_pilon:99200..99577-

>Ggra10820.t1 ID=Ggra10820.t1|Name=Ggra10820.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=378bp|location=Sequence derived from alignment at tig00000192_pilon:99200..99577- (Gracilaria gracilis GNS1m male)
ATGGCCAAACTTACAGAGGCTTCAGAAGGTCTTTCCGAAGGACCAGGTCT
GTCTCGCTTGCTGCCAATTGACACCATTCGAGAGATGCTTCCTTCAGTTC
CTGAGGTCGACGAAGCCGTTTCATTCTCACAGATTTCAAAGCTCGCAAAA
ACTATGGAATTTGATGTGATCGTCTTTGATACTGCACCAACAGGTCATAC
ACTACGGCTTCTTGGTTTCCCACAAGTAGCAGACAAGGCACTTTCCAAGT
TTGACGAAATGCGCCAACGATTGAATCCACTAATGTCTATGTTTACTGGC
GGAGATCCATCTGTGCAAGAGAAGATACAGCAACTTGAAGATCAGCTTGC
CGCTGTAAAGAAAGATACAGCAACTTGA
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