Ggra10814.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10814.t1
Unique NameGgra10814.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length88
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000192_piloncontigtig00000192_pilon:29818..30182 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10814Ggra10814Gracilaria gracilis GNS1m malegenetig00000192_pilon 29818..30182 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10814.t1Ggra10814.t1Gracilaria gracilis GNS1m malepolypeptidetig00000192_pilon 29818..30182 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10814.t1.stop1Ggra10814.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000192_pilon 29818..29820 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10814.t1.CDS1Ggra10814.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000192_pilon 29818..30055 -
Ggra10814.t1.CDS2Ggra10814.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000192_pilon 30157..30182 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10814.t1.exon1Ggra10814.t1.exon1Gracilaria gracilis GNS1m maleexontig00000192_pilon 29818..30055 -
Ggra10814.t1.exon2Ggra10814.t1.exon2Gracilaria gracilis GNS1m maleexontig00000192_pilon 30157..30182 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10814.t1.intron1Ggra10814.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000192_pilon 30056..30156 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10814.t1.start1Ggra10814.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000192_pilon 30180..30182 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10814.t1 ID=Ggra10814.t1|Name=Ggra10814.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=88bp
MVTRSTSMKNSTRTMQSTKVVNFSQHPAGFEWETCVCTCGKEEEKIDHSL
LADENSYGDVGDDEITDRRQVVVPPERNGEGEKGEVC*
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spliced messenger RNA

>Ggra10814.t1 ID=Ggra10814.t1|Name=Ggra10814.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=264bp|location=Sequence derived from alignment at tig00000192_pilon:29818..30182- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTACAAGAAGTACATCGATGAAAAACAGCACACGCACTATGCAATC
CACCAAAGTGGTAAATTTTTCCCAACATCCAGCGGGCTTTGAGTGGGAGA
CGTGTGTTTGTACATGTGGCAAGGAAGAAGAGAAGATTGATCACTCTTTG
CTGGCGGATGAGAACAGCTACGGTGATGTTGGAGATGACGAGATAACCGA
TCGCAGGCAAGTTGTCGTGCCACCCGAGCGCAATGGCGAGGGCGAGAAGG
GCGAGGTTTGTTAG
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protein sequence of Ggra10814.t1

>Ggra10814.t1 ID=Ggra10814.t1|Name=Ggra10814.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=88bp
MVTRSTSMKNSTRTMQSTKVVNFSQHPAGFEWETCVCTCGKEEEKIDHSL
LADENSYGDVGDDEITDRRQVVVPPERNGEGEKGEVC*
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mRNA from alignment at tig00000192_pilon:29818..30182-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10814.t1 ID=Ggra10814.t1|Name=Ggra10814.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=365bp|location=Sequence derived from alignment at tig00000192_pilon:29818..30182- (Gracilaria gracilis GNS1m male)
ATGGTTACAAGAAGTACATCGATGAAGTACGTGAGCATGAGCAGCATCTC
GGAGGGAGCACTCGTGGAGTTTGTTGCTCGCAGAACTGTTGCCGAGATAC
TGAACAGGACTAACCAAACAGTTGCAGAAACAGCACACGCACTATGCAAT
CCACCAAAGTGGTAAATTTTTCCCAACATCCAGCGGGCTTTGAGTGGGAG
ACGTGTGTTTGTACATGTGGCAAGGAAGAAGAGAAGATTGATCACTCTTT
GCTGGCGGATGAGAACAGCTACGGTGATGTTGGAGATGACGAGATAACCG
ATCGCAGGCAAGTTGTCGTGCCACCCGAGCGCAATGGCGAGGGCGAGAAG
GGCGAGGTTTGTTAG
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Coding sequence (CDS) from alignment at tig00000192_pilon:29818..30182-

>Ggra10814.t1 ID=Ggra10814.t1|Name=Ggra10814.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=264bp|location=Sequence derived from alignment at tig00000192_pilon:29818..30182- (Gracilaria gracilis GNS1m male)
ATGGTTACAAGAAGTACATCGATGAAAAACAGCACACGCACTATGCAATC
CACCAAAGTGGTAAATTTTTCCCAACATCCAGCGGGCTTTGAGTGGGAGA
CGTGTGTTTGTACATGTGGCAAGGAAGAAGAGAAGATTGATCACTCTTTG
CTGGCGGATGAGAACAGCTACGGTGATGTTGGAGATGACGAGATAACCGA
TCGCAGGCAAGTTGTCGTGCCACCCGAGCGCAATGGCGAGGGCGAGAAGG
GCGAGGTTTGTTAG
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