Ggra8538.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra8538.t1
Unique Name	Ggra8538.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	429

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000191_pilon	contig	tig00000191_pilon:127190..128476 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705678.1
Preferred name	STE24
PFAMs	Peptidase_M48,Peptidase_M48_N
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00141
KEGG ko	ko:K06013
KEGG Reaction	R09845
KEGG Pathway	ko00900,ko01130,map00900,map01130
GOs	GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005637,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005773,GO:0005783,GO:0005789,GO:0006508,GO:0006807,GO:0007323,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009987,GO:0010467,GO:0012505,GO:0016020,GO:0016021,GO:0016485,GO:0016787,GO:0019538,GO:0019866,GO:0019867,GO:0030176,GO:0031090,GO:0031136,GO:0031137,GO:0031139,GO:0031224,GO:0031227,GO:0031965,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0031984,GO:0042175,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043900,GO:0043902,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046999,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051604,GO:0065007,GO:0070011,GO:0071432,GO:0071586,GO:0071704,GO:0080120,GO:0098588,GO:0098805,GO:0098827,GO:0140096,GO:1901564,GO:2000241,GO:2000243
Evalue	7.08e-98
EggNOG OGs	COG0501@1\|root,KOG2719@2759\|Eukaryota
EC	3.4.24.84
Description	CAAX-box protein processing
COG category	O
BRITE	ko00000,ko00001,ko01000,ko01002,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra8538	Ggra8538	Gracilaria gracilis GNS1m male	gene	tig00000191_pilon 127190..128476 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8538.t1.start1	Ggra8538.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000191_pilon 127190..127192 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8538.t1.CDS1	Ggra8538.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000191_pilon 127190..128476 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8538.t1.exon1	Ggra8538.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000191_pilon 127190..128476 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8538.t1.stop1	Ggra8538.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000191_pilon 128474..128476 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra8538.t1	Ggra8538.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000191_pilon 127190..128476 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000191_pilon:127190..128476+
coding sequence from alignment at tig00000191_pilon:127190..128476+

mRNA sequence

>Ggra8538.t1 ID=Ggra8538.t1|Name=Ggra8538.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=429bp
MIPYMPLCVCAKLVVTAFELYVTLRQHRRFHPTHALSKRLSPIIPPHKFR
QSQTYCRAKSTFDIVTTLIDAAVATFLTLRFVNPRIWAFAARFAPRSELT
HTLLFAAFTALFSTLLDLPPSIYKTFVLEAKYGFNRTTVRTFVADMLKSL
LLSLALGAPILSLLFYVLRYFAAYSPFTIACGLWITLSTIVISMLFIYPL
FIAPLFNKFDPLPEGELKQKLIALAQRLDFPLDKMYVIDGSRRSSHSNAY
IFGLTKKYICIYDSLLEQTQAQHDQVVSILCHELGHWKYSHLLLGVGISL
LQIFFTCMLYGLTCGNEDLYLSFGYTDGMPVIIGLMLFNELLSPMDSLLS
PLQNMLSRRFEYQADAFAKEQGMEKKLGDALVTISVSNLSNMSPDPLYSA
WNYSHPTLLERLDALNVTPELIETRKDQ*

spliced messenger RNA

>Ggra8538.t1 ID=Ggra8538.t1|Name=Ggra8538.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1287bp|location=Sequence derived from alignment at tig00000191_pilon:127190..128476+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCCCGTACATGCCGCTGTGCGTGTGCGCAAAGCTCGTCGTCACCGC
CTTCGAGCTGTACGTCACGCTGCGTCAACACCGCCGCTTCCACCCCACGC
ACGCGCTGTCCAAGCGGCTGTCGCCCATCATCCCGCCGCACAAGTTCCGC
CAGTCGCAGACGTACTGCCGCGCAAAGTCCACCTTCGACATCGTCACCAC
GCTCATCGACGCCGCCGTGGCCACCTTTCTCACGCTGCGCTTCGTCAACC
CGCGCATCTGGGCGTTTGCCGCGCGCTTTGCGCCGCGCTCCGAGCTCACG
CACACGCTGTTGTTCGCCGCATTCACGGCGCTGTTTTCCACGCTGCTTGA
CTTGCCGCCTTCCATCTACAAGACCTTTGTGCTGGAGGCCAAGTACGGTT
TTAATCGCACCACGGTGCGCACGTTTGTGGCGGACATGCTCAAGAGTTTG
TTGCTGTCCTTGGCGCTTGGCGCGCCTATTCTCAGCTTGTTGTTCTATGT
GTTGCGCTACTTTGCCGCCTATAGTCCGTTCACCATTGCGTGTGGGCTGT
GGATCACGCTGTCTACCATTGTCATCTCCATGCTGTTTATCTACCCTCTG
TTCATTGCGCCGCTGTTCAACAAGTTCGACCCGTTGCCGGAGGGCGAGCT
CAAGCAAAAGCTCATTGCGTTGGCGCAACGGCTCGACTTTCCGCTCGACA
AGATGTATGTCATTGATGGTAGTCGCCGCTCGTCGCACTCCAACGCCTAC
ATCTTCGGCCTCACCAAGAAGTATATCTGCATTTACGACTCCTTGTTGGA
GCAGACGCAGGCGCAGCATGATCAGGTCGTCAGCATTCTGTGTCATGAGC
TTGGCCATTGGAAGTACTCTCACCTGCTGCTGGGCGTTGGCATCTCGCTG
CTCCAGATCTTCTTCACCTGTATGCTGTATGGTCTCACTTGCGGCAACGA
GGATCTGTACCTCAGTTTTGGCTACACGGACGGAATGCCCGTCATCATTG
GCCTCATGTTGTTCAACGAACTGCTTTCACCCATGGACAGCCTGCTCAGT
CCGTTGCAGAACATGCTGTCGCGGCGATTCGAGTATCAGGCCGATGCGTT
TGCAAAGGAGCAAGGAATGGAGAAGAAGCTTGGAGATGCTTTAGTGACCA
TCTCTGTGTCCAATCTCAGTAACATGTCTCCCGATCCGTTGTACTCTGCA
TGGAACTATTCTCACCCTACTTTGCTTGAACGGCTTGACGCCCTCAACGT
AACCCCAGAACTGATTGAAACCAGGAAGGACCAGTAG

protein sequence of Ggra8538.t1

>Ggra8538.t1 ID=Ggra8538.t1|Name=Ggra8538.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=429bp
MIPYMPLCVCAKLVVTAFELYVTLRQHRRFHPTHALSKRLSPIIPPHKFR
QSQTYCRAKSTFDIVTTLIDAAVATFLTLRFVNPRIWAFAARFAPRSELT
HTLLFAAFTALFSTLLDLPPSIYKTFVLEAKYGFNRTTVRTFVADMLKSL
LLSLALGAPILSLLFYVLRYFAAYSPFTIACGLWITLSTIVISMLFIYPL
FIAPLFNKFDPLPEGELKQKLIALAQRLDFPLDKMYVIDGSRRSSHSNAY
IFGLTKKYICIYDSLLEQTQAQHDQVVSILCHELGHWKYSHLLLGVGISL
LQIFFTCMLYGLTCGNEDLYLSFGYTDGMPVIIGLMLFNELLSPMDSLLS
PLQNMLSRRFEYQADAFAKEQGMEKKLGDALVTISVSNLSNMSPDPLYSA
WNYSHPTLLERLDALNVTPELIETRKDQ*

mRNA from alignment at tig00000191_pilon:127190..128476+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra8538.t1 ID=Ggra8538.t1|Name=Ggra8538.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1287bp|location=Sequence derived from alignment at tig00000191_pilon:127190..128476+ (Gracilaria gracilis GNS1m male)
ATGATCCCGTACATGCCGCTGTGCGTGTGCGCAAAGCTCGTCGTCACCGC
CTTCGAGCTGTACGTCACGCTGCGTCAACACCGCCGCTTCCACCCCACGC
ACGCGCTGTCCAAGCGGCTGTCGCCCATCATCCCGCCGCACAAGTTCCGC
CAGTCGCAGACGTACTGCCGCGCAAAGTCCACCTTCGACATCGTCACCAC
GCTCATCGACGCCGCCGTGGCCACCTTTCTCACGCTGCGCTTCGTCAACC
CGCGCATCTGGGCGTTTGCCGCGCGCTTTGCGCCGCGCTCCGAGCTCACG
CACACGCTGTTGTTCGCCGCATTCACGGCGCTGTTTTCCACGCTGCTTGA
CTTGCCGCCTTCCATCTACAAGACCTTTGTGCTGGAGGCCAAGTACGGTT
TTAATCGCACCACGGTGCGCACGTTTGTGGCGGACATGCTCAAGAGTTTG
TTGCTGTCCTTGGCGCTTGGCGCGCCTATTCTCAGCTTGTTGTTCTATGT
GTTGCGCTACTTTGCCGCCTATAGTCCGTTCACCATTGCGTGTGGGCTGT
GGATCACGCTGTCTACCATTGTCATCTCCATGCTGTTTATCTACCCTCTG
TTCATTGCGCCGCTGTTCAACAAGTTCGACCCGTTGCCGGAGGGCGAGCT
CAAGCAAAAGCTCATTGCGTTGGCGCAACGGCTCGACTTTCCGCTCGACA
AGATGTATGTCATTGATGGTAGTCGCCGCTCGTCGCACTCCAACGCCTAC
ATCTTCGGCCTCACCAAGAAGTATATCTGCATTTACGACTCCTTGTTGGA
GCAGACGCAGGCGCAGCATGATCAGGTCGTCAGCATTCTGTGTCATGAGC
TTGGCCATTGGAAGTACTCTCACCTGCTGCTGGGCGTTGGCATCTCGCTG
CTCCAGATCTTCTTCACCTGTATGCTGTATGGTCTCACTTGCGGCAACGA
GGATCTGTACCTCAGTTTTGGCTACACGGACGGAATGCCCGTCATCATTG
GCCTCATGTTGTTCAACGAACTGCTTTCACCCATGGACAGCCTGCTCAGT
CCGTTGCAGAACATGCTGTCGCGGCGATTCGAGTATCAGGCCGATGCGTT
TGCAAAGGAGCAAGGAATGGAGAAGAAGCTTGGAGATGCTTTAGTGACCA
TCTCTGTGTCCAATCTCAGTAACATGTCTCCCGATCCGTTGTACTCTGCA
TGGAACTATTCTCACCCTACTTTGCTTGAACGGCTTGACGCCCTCAACGT
AACCCCAGAACTGATTGAAACCAGGAAGGACCAGTAG

Coding sequence (CDS) from alignment at tig00000191_pilon:127190..128476+

>Ggra8538.t1 ID=Ggra8538.t1|Name=Ggra8538.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1287bp|location=Sequence derived from alignment at tig00000191_pilon:127190..128476+ (Gracilaria gracilis GNS1m male)
ATGATCCCGTACATGCCGCTGTGCGTGTGCGCAAAGCTCGTCGTCACCGC
CTTCGAGCTGTACGTCACGCTGCGTCAACACCGCCGCTTCCACCCCACGC
ACGCGCTGTCCAAGCGGCTGTCGCCCATCATCCCGCCGCACAAGTTCCGC
CAGTCGCAGACGTACTGCCGCGCAAAGTCCACCTTCGACATCGTCACCAC
GCTCATCGACGCCGCCGTGGCCACCTTTCTCACGCTGCGCTTCGTCAACC
CGCGCATCTGGGCGTTTGCCGCGCGCTTTGCGCCGCGCTCCGAGCTCACG
CACACGCTGTTGTTCGCCGCATTCACGGCGCTGTTTTCCACGCTGCTTGA
CTTGCCGCCTTCCATCTACAAGACCTTTGTGCTGGAGGCCAAGTACGGTT
TTAATCGCACCACGGTGCGCACGTTTGTGGCGGACATGCTCAAGAGTTTG
TTGCTGTCCTTGGCGCTTGGCGCGCCTATTCTCAGCTTGTTGTTCTATGT
GTTGCGCTACTTTGCCGCCTATAGTCCGTTCACCATTGCGTGTGGGCTGT
GGATCACGCTGTCTACCATTGTCATCTCCATGCTGTTTATCTACCCTCTG
TTCATTGCGCCGCTGTTCAACAAGTTCGACCCGTTGCCGGAGGGCGAGCT
CAAGCAAAAGCTCATTGCGTTGGCGCAACGGCTCGACTTTCCGCTCGACA
AGATGTATGTCATTGATGGTAGTCGCCGCTCGTCGCACTCCAACGCCTAC
ATCTTCGGCCTCACCAAGAAGTATATCTGCATTTACGACTCCTTGTTGGA
GCAGACGCAGGCGCAGCATGATCAGGTCGTCAGCATTCTGTGTCATGAGC
TTGGCCATTGGAAGTACTCTCACCTGCTGCTGGGCGTTGGCATCTCGCTG
CTCCAGATCTTCTTCACCTGTATGCTGTATGGTCTCACTTGCGGCAACGA
GGATCTGTACCTCAGTTTTGGCTACACGGACGGAATGCCCGTCATCATTG
GCCTCATGTTGTTCAACGAACTGCTTTCACCCATGGACAGCCTGCTCAGT
CCGTTGCAGAACATGCTGTCGCGGCGATTCGAGTATCAGGCCGATGCGTT
TGCAAAGGAGCAAGGAATGGAGAAGAAGCTTGGAGATGCTTTAGTGACCA
TCTCTGTGTCCAATCTCAGTAACATGTCTCCCGATCCGTTGTACTCTGCA
TGGAACTATTCTCACCCTACTTTGCTTGAACGGCTTGACGCCCTCAACGT
AACCCCAGAACTGATTGAAACCAGGAAGGACCAGTAG