Ggra9289.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9289.t1
Unique NameGgra9289.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length227
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000190_piloncontigtig00000190_pilon:88510..89299 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9289Ggra9289Gracilaria gracilis GNS1m malegenetig00000190_pilon 88510..89299 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9289.t1Ggra9289.t1Gracilaria gracilis GNS1m malepolypeptidetig00000190_pilon 88510..89299 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9289.t1.start1Ggra9289.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000190_pilon 88510..88512 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9289.t1.CDS1Ggra9289.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000190_pilon 88510..88658 +
Ggra9289.t1.CDS2Ggra9289.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000190_pilon 88768..89299 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9289.t1.exon1Ggra9289.t1.exon1Gracilaria gracilis GNS1m maleexontig00000190_pilon 88510..88658 +
Ggra9289.t1.exon2Ggra9289.t1.exon2Gracilaria gracilis GNS1m maleexontig00000190_pilon 88768..89299 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9289.t1.intron1Ggra9289.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000190_pilon 88659..88767 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9289.t1.stop1Ggra9289.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000190_pilon 89297..89299 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9289.t1 ID=Ggra9289.t1|Name=Ggra9289.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=227bp
MEAIISEREQAVEKCSDYEKRLNKMSSKVHGVEQTVNEASKLTEALQKAN
DASASETSTTRVHEHEDALRDAVGTVAATNLELIAAQGLLVEISTDKSSM
HAQLMKDRHAIHDLKRQYEGNKHGDVKSATVSDISEADHLSAYVPGVTSA
ADPAREMSQQLYCANADAENLQNVLSPSMTEADSALDLVMGTHESLKTIV
HRLKESVSAFIHSRCREETFRKPYRR*
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spliced messenger RNA

>Ggra9289.t1 ID=Ggra9289.t1|Name=Ggra9289.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=681bp|location=Sequence derived from alignment at tig00000190_pilon:88510..89299+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGCAATTATTTCTGAGCGAGAACAGGCAGTAGAAAAATGCTCGGA
CTACGAAAAGAGGTTGAACAAAATGTCGTCTAAGGTTCATGGCGTAGAAC
AAACAGTCAATGAGGCAAGCAAGCTCACAGAGGCTTTACAGAAGGCAAAT
GATGCGTCGGCATCAGAGACATCGACCACTAGAGTGCATGAGCATGAAGA
TGCGTTACGAGATGCAGTAGGAACTGTAGCTGCGACAAACCTTGAACTCA
TTGCTGCGCAGGGTTTGCTGGTCGAAATCTCTACGGACAAATCTTCCATG
CATGCTCAGCTTATGAAAGATCGTCATGCAATACATGATCTCAAGAGGCA
GTATGAAGGCAACAAACATGGTGATGTGAAGAGTGCGACCGTTTCAGACA
TCTCGGAAGCGGATCATCTTTCAGCTTATGTTCCAGGAGTCACTTCTGCT
GCTGATCCCGCACGCGAAATGTCACAACAGCTGTACTGTGCAAATGCAGA
TGCGGAGAATCTACAAAATGTTCTATCACCTTCTATGACAGAAGCAGACT
CGGCTCTGGATTTGGTGATGGGTACCCATGAATCTTTGAAGACTATTGTA
CATCGCTTGAAAGAATCTGTAAGCGCTTTTATTCATTCCCGATGTAGAGA
AGAAACGTTCAGAAAACCTTATCGGCGCTAA
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protein sequence of Ggra9289.t1

>Ggra9289.t1 ID=Ggra9289.t1|Name=Ggra9289.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=227bp
MEAIISEREQAVEKCSDYEKRLNKMSSKVHGVEQTVNEASKLTEALQKAN
DASASETSTTRVHEHEDALRDAVGTVAATNLELIAAQGLLVEISTDKSSM
HAQLMKDRHAIHDLKRQYEGNKHGDVKSATVSDISEADHLSAYVPGVTSA
ADPAREMSQQLYCANADAENLQNVLSPSMTEADSALDLVMGTHESLKTIV
HRLKESVSAFIHSRCREETFRKPYRR*
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mRNA from alignment at tig00000190_pilon:88510..89299+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9289.t1 ID=Ggra9289.t1|Name=Ggra9289.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=790bp|location=Sequence derived from alignment at tig00000190_pilon:88510..89299+ (Gracilaria gracilis GNS1m male)
ATGGAAGCAATTATTTCTGAGCGAGAACAGGCAGTAGAAAAATGCTCGGA
CTACGAAAAGAGGTTGAACAAAATGTCGTCTAAGGTTCATGGCGTAGAAC
AAACAGTCAATGAGGCAAGCAAGCTCACAGAGGCTTTACAGAAGGCAAAG
TGAATCGAAGAAGATTAGGAGCATAAAACCAATCTTTGTTGCTCAGGGTT
TTGAGCTTCAATCTCGTTTTGCAGGCTCTACCACAGAGACATCTGCTCAA
CCACAAAGTGATGCGTCGGCATCAGAGACATCGACCACTAGAGTGCATGA
GCATGAAGATGCGTTACGAGATGCAGTAGGAACTGTAGCTGCGACAAACC
TTGAACTCATTGCTGCGCAGGGTTTGCTGGTCGAAATCTCTACGGACAAA
TCTTCCATGCATGCTCAGCTTATGAAAGATCGTCATGCAATACATGATCT
CAAGAGGCAGTATGAAGGCAACAAACATGGTGATGTGAAGAGTGCGACCG
TTTCAGACATCTCGGAAGCGGATCATCTTTCAGCTTATGTTCCAGGAGTC
ACTTCTGCTGCTGATCCCGCACGCGAAATGTCACAACAGCTGTACTGTGC
AAATGCAGATGCGGAGAATCTACAAAATGTTCTATCACCTTCTATGACAG
AAGCAGACTCGGCTCTGGATTTGGTGATGGGTACCCATGAATCTTTGAAG
ACTATTGTACATCGCTTGAAAGAATCTGTAAGCGCTTTTATTCATTCCCG
ATGTAGAGAAGAAACGTTCAGAAAACCTTATCGGCGCTAA
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Coding sequence (CDS) from alignment at tig00000190_pilon:88510..89299+

>Ggra9289.t1 ID=Ggra9289.t1|Name=Ggra9289.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=681bp|location=Sequence derived from alignment at tig00000190_pilon:88510..89299+ (Gracilaria gracilis GNS1m male)
ATGGAAGCAATTATTTCTGAGCGAGAACAGGCAGTAGAAAAATGCTCGGA
CTACGAAAAGAGGTTGAACAAAATGTCGTCTAAGGTTCATGGCGTAGAAC
AAACAGTCAATGAGGCAAGCAAGCTCACAGAGGCTTTACAGAAGGCAAAT
GATGCGTCGGCATCAGAGACATCGACCACTAGAGTGCATGAGCATGAAGA
TGCGTTACGAGATGCAGTAGGAACTGTAGCTGCGACAAACCTTGAACTCA
TTGCTGCGCAGGGTTTGCTGGTCGAAATCTCTACGGACAAATCTTCCATG
CATGCTCAGCTTATGAAAGATCGTCATGCAATACATGATCTCAAGAGGCA
GTATGAAGGCAACAAACATGGTGATGTGAAGAGTGCGACCGTTTCAGACA
TCTCGGAAGCGGATCATCTTTCAGCTTATGTTCCAGGAGTCACTTCTGCT
GCTGATCCCGCACGCGAAATGTCACAACAGCTGTACTGTGCAAATGCAGA
TGCGGAGAATCTACAAAATGTTCTATCACCTTCTATGACAGAAGCAGACT
CGGCTCTGGATTTGGTGATGGGTACCCATGAATCTTTGAAGACTATTGTA
CATCGCTTGAAAGAATCTGTAAGCGCTTTTATTCATTCCCGATGTAGAGA
AGAAACGTTCAGAAAACCTTATCGGCGCTAA
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