Ggra3331.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3331.t1
Unique Name	Ggra3331.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	507

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000189_pilon	contig	tig00000189_pilon:22881..24401 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1142394.PSMK_25450
PFAMs	UnbV_ASPIC,VCBS
Max annot lvl	2\|Bacteria
Evalue	7.94e-42
EggNOG OGs	COG2931@1\|root,COG2931@2\|Bacteria
Description	calcium- and calmodulin-responsive adenylate cyclase activity
COG category	Q

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3331	Ggra3331	Gracilaria gracilis GNS1m male	gene	tig00000189_pilon 22881..24401 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3331.t1.start1	Ggra3331.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000189_pilon 22881..22883 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3331.t1.CDS1	Ggra3331.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000189_pilon 22881..24401 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3331.t1.exon1	Ggra3331.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000189_pilon 22881..24401 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3331.t1.stop1	Ggra3331.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000189_pilon 24399..24401 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3331.t1	Ggra3331.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000189_pilon 22881..24401 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000189_pilon:22881..24401+
coding sequence from alignment at tig00000189_pilon:22881..24401+

mRNA sequence

>Ggra3331.t1 ID=Ggra3331.t1|Name=Ggra3331.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=507bp
MASFVRFLPVLFAVWRVAVANSVTPAFEKVTATAGLPANNPRKKYGGPTV
VDLDRDGLPDLLFCHHDDYFAEVYYNDGGVFSKGDFSVWRDSHGMVPTPI
SPTTRNMRFSLSVGGSFGLFPTRPEFFEADTSRSIINITAAAGVDRNGGR
GRTAIYMDLSFDNPAYPDVIFMNAKPRDDGPSHFAYQNVGGFYTLRTLPG
FEFDRNWYGSAIDIDGDRVMELVVHYNKLAAYKLVAPFQFEDITASVFPP
DIERYGIVAIAEFDYDNDGDFDLYVARTKSGDLQWSPGNHFDDYLFRNDG
GKFVDVTDAANIPRGTTTRGVTVADFNNDGHIDIFVTQYVDADIMLLNRG
DGTFERVDGLISRPNGVRGDNAQAIDYNGDGMMDIISSQGDQHDTGLRGG
YELFRNILPNALNSRYLKVRVGNAPDGSATPLHAVVTVVAGDGERRMMRR
VGTPGAAVSRSYVETLHFGLGGYAYANSIEVIWTSGYKLTRREVASHTQT
ITVGDV*

spliced messenger RNA

>Ggra3331.t1 ID=Ggra3331.t1|Name=Ggra3331.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1521bp|location=Sequence derived from alignment at tig00000189_pilon:22881..24401+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTCCTTCGTGCGTTTCTTGCCAGTGCTGTTCGCCGTTTGGCGAGT
TGCCGTCGCGAACTCCGTTACGCCGGCCTTCGAAAAGGTAACCGCCACCG
CCGGTCTGCCCGCCAATAATCCGCGAAAGAAGTATGGCGGTCCTACTGTC
GTTGATCTTGACCGAGATGGCTTACCGGATCTCCTTTTCTGTCATCACGA
TGACTACTTTGCCGAGGTATACTACAATGATGGTGGTGTGTTTTCTAAAG
GCGACTTCTCTGTGTGGCGCGATAGTCATGGCATGGTTCCCACTCCCATT
TCACCAACCACGCGAAACATGCGCTTCTCTTTGTCTGTCGGAGGTTCCTT
TGGACTGTTTCCAACGCGCCCGGAATTCTTTGAGGCCGATACCAGTCGCT
CCATCATCAATATTACAGCCGCCGCTGGTGTCGACCGGAATGGCGGTCGC
GGTCGAACTGCAATTTACATGGATTTGTCGTTCGATAACCCCGCGTATCC
GGATGTCATCTTTATGAATGCCAAGCCGAGAGATGATGGACCTTCTCACT
TTGCGTACCAGAATGTTGGCGGATTCTATACATTGCGCACTCTTCCTGGC
TTCGAGTTTGACAGGAACTGGTACGGCTCCGCAATTGACATTGACGGAGA
CCGCGTTATGGAGCTTGTCGTTCATTACAACAAACTTGCAGCGTACAAAC
TGGTTGCGCCCTTCCAGTTCGAGGACATCACCGCCAGTGTGTTTCCGCCG
GACATCGAACGATACGGTATAGTTGCTATCGCCGAATTTGATTATGACAA
TGATGGTGACTTTGATCTGTACGTTGCGAGGACTAAGTCCGGTGATCTTC
AGTGGTCGCCTGGCAACCACTTTGACGATTACTTGTTCCGTAATGATGGT
GGTAAGTTTGTTGACGTTACTGATGCGGCCAACATCCCTCGGGGAACTAC
TACCAGAGGGGTGACGGTAGCGGACTTTAACAACGATGGACACATAGATA
TCTTTGTCACACAATACGTCGATGCGGATATTATGCTACTTAATCGCGGT
GACGGAACGTTTGAGCGCGTTGATGGTCTTATTTCTCGTCCCAATGGCGT
GAGGGGAGACAATGCACAAGCCATTGATTACAATGGGGACGGGATGATGG
ACATTATCAGCAGTCAAGGCGACCAACATGATACAGGTCTCAGGGGGGGT
TACGAACTGTTCCGCAATATTTTGCCCAACGCATTGAATTCGCGATACTT
AAAGGTGCGCGTTGGAAATGCTCCAGACGGATCTGCGACGCCGTTGCATG
CGGTGGTGACTGTCGTTGCGGGAGATGGAGAAAGAAGGATGATGAGACGT
GTCGGCACTCCTGGTGCTGCTGTGTCGAGGTCTTACGTTGAGACCCTGCA
TTTCGGGTTGGGTGGATATGCATATGCTAATTCCATTGAAGTGATATGGA
CGAGTGGCTACAAGTTGACGCGAAGAGAAGTTGCTTCGCACACTCAAACA
ATCACTGTGGGTGACGTATAG

protein sequence of Ggra3331.t1

>Ggra3331.t1 ID=Ggra3331.t1|Name=Ggra3331.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=507bp
MASFVRFLPVLFAVWRVAVANSVTPAFEKVTATAGLPANNPRKKYGGPTV
VDLDRDGLPDLLFCHHDDYFAEVYYNDGGVFSKGDFSVWRDSHGMVPTPI
SPTTRNMRFSLSVGGSFGLFPTRPEFFEADTSRSIINITAAAGVDRNGGR
GRTAIYMDLSFDNPAYPDVIFMNAKPRDDGPSHFAYQNVGGFYTLRTLPG
FEFDRNWYGSAIDIDGDRVMELVVHYNKLAAYKLVAPFQFEDITASVFPP
DIERYGIVAIAEFDYDNDGDFDLYVARTKSGDLQWSPGNHFDDYLFRNDG
GKFVDVTDAANIPRGTTTRGVTVADFNNDGHIDIFVTQYVDADIMLLNRG
DGTFERVDGLISRPNGVRGDNAQAIDYNGDGMMDIISSQGDQHDTGLRGG
YELFRNILPNALNSRYLKVRVGNAPDGSATPLHAVVTVVAGDGERRMMRR
VGTPGAAVSRSYVETLHFGLGGYAYANSIEVIWTSGYKLTRREVASHTQT
ITVGDV*

mRNA from alignment at tig00000189_pilon:22881..24401+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3331.t1 ID=Ggra3331.t1|Name=Ggra3331.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1521bp|location=Sequence derived from alignment at tig00000189_pilon:22881..24401+ (Gracilaria gracilis GNS1m male)
ATGGCCTCCTTCGTGCGTTTCTTGCCAGTGCTGTTCGCCGTTTGGCGAGT
TGCCGTCGCGAACTCCGTTACGCCGGCCTTCGAAAAGGTAACCGCCACCG
CCGGTCTGCCCGCCAATAATCCGCGAAAGAAGTATGGCGGTCCTACTGTC
GTTGATCTTGACCGAGATGGCTTACCGGATCTCCTTTTCTGTCATCACGA
TGACTACTTTGCCGAGGTATACTACAATGATGGTGGTGTGTTTTCTAAAG
GCGACTTCTCTGTGTGGCGCGATAGTCATGGCATGGTTCCCACTCCCATT
TCACCAACCACGCGAAACATGCGCTTCTCTTTGTCTGTCGGAGGTTCCTT
TGGACTGTTTCCAACGCGCCCGGAATTCTTTGAGGCCGATACCAGTCGCT
CCATCATCAATATTACAGCCGCCGCTGGTGTCGACCGGAATGGCGGTCGC
GGTCGAACTGCAATTTACATGGATTTGTCGTTCGATAACCCCGCGTATCC
GGATGTCATCTTTATGAATGCCAAGCCGAGAGATGATGGACCTTCTCACT
TTGCGTACCAGAATGTTGGCGGATTCTATACATTGCGCACTCTTCCTGGC
TTCGAGTTTGACAGGAACTGGTACGGCTCCGCAATTGACATTGACGGAGA
CCGCGTTATGGAGCTTGTCGTTCATTACAACAAACTTGCAGCGTACAAAC
TGGTTGCGCCCTTCCAGTTCGAGGACATCACCGCCAGTGTGTTTCCGCCG
GACATCGAACGATACGGTATAGTTGCTATCGCCGAATTTGATTATGACAA
TGATGGTGACTTTGATCTGTACGTTGCGAGGACTAAGTCCGGTGATCTTC
AGTGGTCGCCTGGCAACCACTTTGACGATTACTTGTTCCGTAATGATGGT
GGTAAGTTTGTTGACGTTACTGATGCGGCCAACATCCCTCGGGGAACTAC
TACCAGAGGGGTGACGGTAGCGGACTTTAACAACGATGGACACATAGATA
TCTTTGTCACACAATACGTCGATGCGGATATTATGCTACTTAATCGCGGT
GACGGAACGTTTGAGCGCGTTGATGGTCTTATTTCTCGTCCCAATGGCGT
GAGGGGAGACAATGCACAAGCCATTGATTACAATGGGGACGGGATGATGG
ACATTATCAGCAGTCAAGGCGACCAACATGATACAGGTCTCAGGGGGGGT
TACGAACTGTTCCGCAATATTTTGCCCAACGCATTGAATTCGCGATACTT
AAAGGTGCGCGTTGGAAATGCTCCAGACGGATCTGCGACGCCGTTGCATG
CGGTGGTGACTGTCGTTGCGGGAGATGGAGAAAGAAGGATGATGAGACGT
GTCGGCACTCCTGGTGCTGCTGTGTCGAGGTCTTACGTTGAGACCCTGCA
TTTCGGGTTGGGTGGATATGCATATGCTAATTCCATTGAAGTGATATGGA
CGAGTGGCTACAAGTTGACGCGAAGAGAAGTTGCTTCGCACACTCAAACA
ATCACTGTGGGTGACGTATAG

Coding sequence (CDS) from alignment at tig00000189_pilon:22881..24401+

>Ggra3331.t1 ID=Ggra3331.t1|Name=Ggra3331.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1521bp|location=Sequence derived from alignment at tig00000189_pilon:22881..24401+ (Gracilaria gracilis GNS1m male)
ATGGCCTCCTTCGTGCGTTTCTTGCCAGTGCTGTTCGCCGTTTGGCGAGT
TGCCGTCGCGAACTCCGTTACGCCGGCCTTCGAAAAGGTAACCGCCACCG
CCGGTCTGCCCGCCAATAATCCGCGAAAGAAGTATGGCGGTCCTACTGTC
GTTGATCTTGACCGAGATGGCTTACCGGATCTCCTTTTCTGTCATCACGA
TGACTACTTTGCCGAGGTATACTACAATGATGGTGGTGTGTTTTCTAAAG
GCGACTTCTCTGTGTGGCGCGATAGTCATGGCATGGTTCCCACTCCCATT
TCACCAACCACGCGAAACATGCGCTTCTCTTTGTCTGTCGGAGGTTCCTT
TGGACTGTTTCCAACGCGCCCGGAATTCTTTGAGGCCGATACCAGTCGCT
CCATCATCAATATTACAGCCGCCGCTGGTGTCGACCGGAATGGCGGTCGC
GGTCGAACTGCAATTTACATGGATTTGTCGTTCGATAACCCCGCGTATCC
GGATGTCATCTTTATGAATGCCAAGCCGAGAGATGATGGACCTTCTCACT
TTGCGTACCAGAATGTTGGCGGATTCTATACATTGCGCACTCTTCCTGGC
TTCGAGTTTGACAGGAACTGGTACGGCTCCGCAATTGACATTGACGGAGA
CCGCGTTATGGAGCTTGTCGTTCATTACAACAAACTTGCAGCGTACAAAC
TGGTTGCGCCCTTCCAGTTCGAGGACATCACCGCCAGTGTGTTTCCGCCG
GACATCGAACGATACGGTATAGTTGCTATCGCCGAATTTGATTATGACAA
TGATGGTGACTTTGATCTGTACGTTGCGAGGACTAAGTCCGGTGATCTTC
AGTGGTCGCCTGGCAACCACTTTGACGATTACTTGTTCCGTAATGATGGT
GGTAAGTTTGTTGACGTTACTGATGCGGCCAACATCCCTCGGGGAACTAC
TACCAGAGGGGTGACGGTAGCGGACTTTAACAACGATGGACACATAGATA
TCTTTGTCACACAATACGTCGATGCGGATATTATGCTACTTAATCGCGGT
GACGGAACGTTTGAGCGCGTTGATGGTCTTATTTCTCGTCCCAATGGCGT
GAGGGGAGACAATGCACAAGCCATTGATTACAATGGGGACGGGATGATGG
ACATTATCAGCAGTCAAGGCGACCAACATGATACAGGTCTCAGGGGGGGT
TACGAACTGTTCCGCAATATTTTGCCCAACGCATTGAATTCGCGATACTT
AAAGGTGCGCGTTGGAAATGCTCCAGACGGATCTGCGACGCCGTTGCATG
CGGTGGTGACTGTCGTTGCGGGAGATGGAGAAAGAAGGATGATGAGACGT
GTCGGCACTCCTGGTGCTGCTGTGTCGAGGTCTTACGTTGAGACCCTGCA
TTTCGGGTTGGGTGGATATGCATATGCTAATTCCATTGAAGTGATATGGA
CGAGTGGCTACAAGTTGACGCGAAGAGAAGTTGCTTCGCACACTCAAACA
ATCACTGTGGGTGACGTATAG