Ggra3370.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3370.t1
Unique NameGgra3370.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length265
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000189_piloncontigtig00000189_pilon:138869..139663 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708647.1
Preferred nameCLPR4
PFAMsCLP_protease
Max annot lvl2759|Eukaryota
KEGG koko:K01358
KEGG Pathwayko04112,ko04212,map04112,map04212
GOsGO:0000302,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006950,GO:0006979,GO:0008150,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009941,GO:0010468,GO:0019222,GO:0031967,GO:0031975,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050896,GO:0060255,GO:0065007,GO:1901700
Evalue6.09e-103
EggNOG OGsCOG0740@1|root,KOG0840@2759|Eukaryota
EC3.4.21.92
Descriptionserine-type endopeptidase activity
COG categoryOU
BRITEko00000,ko00001,ko01000,ko01002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3370Ggra3370Gracilaria gracilis GNS1m malegenetig00000189_pilon 138869..139663 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3370.t1.stop1Ggra3370.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000189_pilon 138869..138871 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3370.t1.CDS1Ggra3370.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000189_pilon 138869..139663 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3370.t1.exon1Ggra3370.t1.exon1Gracilaria gracilis GNS1m maleexontig00000189_pilon 138869..139663 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3370.t1.start1Ggra3370.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000189_pilon 139661..139663 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3370.t1Ggra3370.t1Gracilaria gracilis GNS1m malepolypeptidetig00000189_pilon 138869..139663 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3370.t1 ID=Ggra3370.t1|Name=Ggra3370.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=265bp
MTAFVSSFAGASVRPQFRQNALQTAVRAPTRRPAAARRVRFTPRAMQSAG
GGTMYEGARAGPPPDLPSLLLHNRIIYLGMSLVPAVTELIIAEFLYLQYE
DASKPVYMYINSTGTSSADGQNVGFETEAFAVVDTMNYVKMPVHTICVGQ
AFGMAGMLLASGEKTHRAALPNATIMLHQPRGSAQGQASDIAIKAREVLY
NRRQAFEIIAERSGQPVEQIERDAMRTKYFTPQEAVDYGLIDKVLVSEKD
LPQKAPTFLSALDK*
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spliced messenger RNA

>Ggra3370.t1 ID=Ggra3370.t1|Name=Ggra3370.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=795bp|location=Sequence derived from alignment at tig00000189_pilon:138869..139663- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGCCTTCGTTTCGTCCTTCGCGGGCGCTTCCGTACGGCCTCAGTT
CCGACAGAATGCGTTACAGACCGCCGTCCGTGCTCCGACGAGACGACCTG
CCGCTGCGCGTCGTGTGCGCTTCACGCCGCGCGCCATGCAGTCAGCGGGT
GGTGGTACCATGTACGAGGGCGCGAGGGCGGGACCCCCGCCTGACCTTCC
ATCTTTGTTGCTCCATAATCGCATCATTTATTTGGGAATGAGTCTTGTTC
CCGCTGTCACCGAGCTTATCATCGCCGAATTTCTGTACTTGCAGTATGAG
GATGCATCAAAACCGGTGTACATGTATATTAACAGTACTGGAACATCGTC
TGCGGATGGACAGAATGTCGGCTTTGAAACAGAGGCGTTTGCTGTCGTCG
ATACCATGAACTACGTCAAGATGCCCGTGCATACCATATGCGTCGGTCAG
GCGTTTGGTATGGCTGGCATGTTGCTCGCCAGTGGTGAAAAGACTCATCG
TGCAGCCCTTCCCAACGCCACTATCATGCTACACCAGCCTCGCGGTAGTG
CACAGGGACAAGCCAGTGATATTGCAATCAAGGCGAGAGAGGTATTGTAC
AATCGAAGGCAGGCTTTTGAAATTATTGCAGAGCGATCGGGACAGCCTGT
TGAACAAATTGAAAGGGATGCGATGCGAACAAAGTACTTCACCCCACAAG
AGGCCGTTGACTACGGCCTAATTGACAAGGTATTGGTCTCTGAAAAGGAT
CTTCCGCAAAAAGCGCCTACGTTCCTGTCTGCGCTTGACAAGTAA
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protein sequence of Ggra3370.t1

>Ggra3370.t1 ID=Ggra3370.t1|Name=Ggra3370.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=265bp
MTAFVSSFAGASVRPQFRQNALQTAVRAPTRRPAAARRVRFTPRAMQSAG
GGTMYEGARAGPPPDLPSLLLHNRIIYLGMSLVPAVTELIIAEFLYLQYE
DASKPVYMYINSTGTSSADGQNVGFETEAFAVVDTMNYVKMPVHTICVGQ
AFGMAGMLLASGEKTHRAALPNATIMLHQPRGSAQGQASDIAIKAREVLY
NRRQAFEIIAERSGQPVEQIERDAMRTKYFTPQEAVDYGLIDKVLVSEKD
LPQKAPTFLSALDK*
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mRNA from alignment at tig00000189_pilon:138869..139663-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3370.t1 ID=Ggra3370.t1|Name=Ggra3370.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=795bp|location=Sequence derived from alignment at tig00000189_pilon:138869..139663- (Gracilaria gracilis GNS1m male)
ATGACCGCCTTCGTTTCGTCCTTCGCGGGCGCTTCCGTACGGCCTCAGTT
CCGACAGAATGCGTTACAGACCGCCGTCCGTGCTCCGACGAGACGACCTG
CCGCTGCGCGTCGTGTGCGCTTCACGCCGCGCGCCATGCAGTCAGCGGGT
GGTGGTACCATGTACGAGGGCGCGAGGGCGGGACCCCCGCCTGACCTTCC
ATCTTTGTTGCTCCATAATCGCATCATTTATTTGGGAATGAGTCTTGTTC
CCGCTGTCACCGAGCTTATCATCGCCGAATTTCTGTACTTGCAGTATGAG
GATGCATCAAAACCGGTGTACATGTATATTAACAGTACTGGAACATCGTC
TGCGGATGGACAGAATGTCGGCTTTGAAACAGAGGCGTTTGCTGTCGTCG
ATACCATGAACTACGTCAAGATGCCCGTGCATACCATATGCGTCGGTCAG
GCGTTTGGTATGGCTGGCATGTTGCTCGCCAGTGGTGAAAAGACTCATCG
TGCAGCCCTTCCCAACGCCACTATCATGCTACACCAGCCTCGCGGTAGTG
CACAGGGACAAGCCAGTGATATTGCAATCAAGGCGAGAGAGGTATTGTAC
AATCGAAGGCAGGCTTTTGAAATTATTGCAGAGCGATCGGGACAGCCTGT
TGAACAAATTGAAAGGGATGCGATGCGAACAAAGTACTTCACCCCACAAG
AGGCCGTTGACTACGGCCTAATTGACAAGGTATTGGTCTCTGAAAAGGAT
CTTCCGCAAAAAGCGCCTACGTTCCTGTCTGCGCTTGACAAGTAA
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Coding sequence (CDS) from alignment at tig00000189_pilon:138869..139663-

>Ggra3370.t1 ID=Ggra3370.t1|Name=Ggra3370.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=795bp|location=Sequence derived from alignment at tig00000189_pilon:138869..139663- (Gracilaria gracilis GNS1m male)
ATGACCGCCTTCGTTTCGTCCTTCGCGGGCGCTTCCGTACGGCCTCAGTT
CCGACAGAATGCGTTACAGACCGCCGTCCGTGCTCCGACGAGACGACCTG
CCGCTGCGCGTCGTGTGCGCTTCACGCCGCGCGCCATGCAGTCAGCGGGT
GGTGGTACCATGTACGAGGGCGCGAGGGCGGGACCCCCGCCTGACCTTCC
ATCTTTGTTGCTCCATAATCGCATCATTTATTTGGGAATGAGTCTTGTTC
CCGCTGTCACCGAGCTTATCATCGCCGAATTTCTGTACTTGCAGTATGAG
GATGCATCAAAACCGGTGTACATGTATATTAACAGTACTGGAACATCGTC
TGCGGATGGACAGAATGTCGGCTTTGAAACAGAGGCGTTTGCTGTCGTCG
ATACCATGAACTACGTCAAGATGCCCGTGCATACCATATGCGTCGGTCAG
GCGTTTGGTATGGCTGGCATGTTGCTCGCCAGTGGTGAAAAGACTCATCG
TGCAGCCCTTCCCAACGCCACTATCATGCTACACCAGCCTCGCGGTAGTG
CACAGGGACAAGCCAGTGATATTGCAATCAAGGCGAGAGAGGTATTGTAC
AATCGAAGGCAGGCTTTTGAAATTATTGCAGAGCGATCGGGACAGCCTGT
TGAACAAATTGAAAGGGATGCGATGCGAACAAAGTACTTCACCCCACAAG
AGGCCGTTGACTACGGCCTAATTGACAAGGTATTGGTCTCTGAAAAGGAT
CTTCCGCAAAAAGCGCCTACGTTCCTGTCTGCGCTTGACAAGTAA
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