Ggra3366.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3366.t1
Unique NameGgra3366.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length368
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000189_piloncontigtig00000189_pilon:120614..121717 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704367.1
PFAMsMetallophos
Max annot lvl2759|Eukaryota
KEGG rclassRC00017
KEGG koko:K14379
KEGG ReactionR00548
KEGG Pathwayko00740,ko01100,ko04142,ko04380,ko05323,map00740,map01100,map04142,map04380,map05323
Evalue2.48e-67
EggNOG OGsCOG1409@1|root,KOG2679@2759|Eukaryota
EC3.1.3.2
Descriptionacid phosphatase activity
COG categoryU
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3366Ggra3366Gracilaria gracilis GNS1m malegenetig00000189_pilon 120614..121717 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3366.t1.stop1Ggra3366.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000189_pilon 120614..120616 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3366.t1.CDS1Ggra3366.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000189_pilon 120614..121717 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3366.t1.exon1Ggra3366.t1.exon1Gracilaria gracilis GNS1m maleexontig00000189_pilon 120614..121717 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3366.t1.start1Ggra3366.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000189_pilon 121715..121717 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3366.t1Ggra3366.t1Gracilaria gracilis GNS1m malepolypeptidetig00000189_pilon 120614..121717 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3366.t1 ID=Ggra3366.t1|Name=Ggra3366.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=368bp
MMNTQQREESQPLLRAAGACDARRRGAAAWPIGVAAVLTVGALCVLCALL
LLRARSVAAAAVEEAAQHSVSMLVIGDWGREAQHGQPAVAEALARAVEEE
RSHSRRVVVLSTGDNFYKTGVSSVTDRQFNSSFEHVYRQPALADVPWLVA
LGNHDHQGSIQAQVNYSRVSSRWTMPAPYFARRLSPSLTALFLDTTPLVL
SRGSSGAQQQLRWLAGTLAALPARARFVLVGHHNMYTMSIADHLGTPSLR
AALRPLLRPYRRRMLAYVSGHEHSLMHLQDAHGGEHLVSGAGSKLHRIER
PPRAQEAHWRRCCDVLPLRARRAAHGRTVWGRAVHGLLAVRFDGSRMSLR
ALGANGATLYAYSKRVP*
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spliced messenger RNA

>Ggra3366.t1 ID=Ggra3366.t1|Name=Ggra3366.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1104bp|location=Sequence derived from alignment at tig00000189_pilon:120614..121717- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGAACACACAACAGCGAGAAGAATCGCAACCGCTGCTGCGCGCCGC
TGGCGCTTGCGACGCGCGGCGGCGTGGCGCGGCTGCTTGGCCGATCGGCG
TGGCGGCCGTGCTGACGGTCGGCGCGCTGTGCGTGCTGTGCGCGCTGCTG
CTGCTGCGCGCGCGCAGCGTGGCGGCGGCGGCGGTTGAAGAGGCGGCGCA
GCACAGCGTGAGCATGCTGGTGATCGGCGACTGGGGGCGCGAGGCGCAGC
ACGGGCAGCCGGCCGTGGCGGAGGCGCTGGCGCGCGCCGTGGAGGAGGAG
CGAAGCCACTCGCGGCGCGTGGTGGTACTTTCCACCGGCGACAACTTCTA
CAAGACGGGCGTGTCTAGCGTGACGGACCGGCAGTTCAACTCGTCGTTCG
AGCACGTGTACCGACAGCCGGCGCTGGCCGACGTGCCGTGGCTGGTGGCG
CTCGGCAACCACGACCACCAGGGCAGCATCCAGGCGCAGGTGAACTACTC
GCGCGTGTCCAGCCGCTGGACCATGCCGGCGCCGTACTTTGCGCGCCGGC
TGTCGCCGTCGCTCACGGCGCTGTTCCTGGACACCACGCCGTTGGTGCTG
TCGCGCGGCAGCAGCGGCGCGCAGCAGCAGCTGCGCTGGCTGGCGGGCAC
GCTGGCGGCGCTGCCGGCGCGCGCGCGCTTCGTGCTGGTGGGCCACCACA
ACATGTACACCATGTCCATCGCCGACCATCTGGGCACGCCGTCGCTGCGC
GCGGCGCTACGGCCGCTGCTACGGCCGTACCGGCGGCGCATGCTGGCGTA
CGTGTCGGGGCACGAGCACTCGCTCATGCATCTGCAGGACGCGCACGGCG
GCGAGCACCTGGTGAGCGGCGCCGGCAGCAAACTGCACCGCATCGAGCGC
CCGCCGCGCGCGCAGGAGGCGCATTGGCGGCGCTGCTGCGACGTGCTGCC
GCTGCGCGCGCGCCGCGCCGCGCACGGCCGCACCGTGTGGGGGCGCGCCG
TGCACGGGCTGCTGGCCGTGCGCTTTGACGGCTCGCGCATGTCGCTGCGC
GCGCTGGGCGCCAACGGCGCCACGCTGTACGCCTACTCCAAGCGCGTCCC
ATAA
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protein sequence of Ggra3366.t1

>Ggra3366.t1 ID=Ggra3366.t1|Name=Ggra3366.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=368bp
MMNTQQREESQPLLRAAGACDARRRGAAAWPIGVAAVLTVGALCVLCALL
LLRARSVAAAAVEEAAQHSVSMLVIGDWGREAQHGQPAVAEALARAVEEE
RSHSRRVVVLSTGDNFYKTGVSSVTDRQFNSSFEHVYRQPALADVPWLVA
LGNHDHQGSIQAQVNYSRVSSRWTMPAPYFARRLSPSLTALFLDTTPLVL
SRGSSGAQQQLRWLAGTLAALPARARFVLVGHHNMYTMSIADHLGTPSLR
AALRPLLRPYRRRMLAYVSGHEHSLMHLQDAHGGEHLVSGAGSKLHRIER
PPRAQEAHWRRCCDVLPLRARRAAHGRTVWGRAVHGLLAVRFDGSRMSLR
ALGANGATLYAYSKRVP*
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mRNA from alignment at tig00000189_pilon:120614..121717-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3366.t1 ID=Ggra3366.t1|Name=Ggra3366.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1104bp|location=Sequence derived from alignment at tig00000189_pilon:120614..121717- (Gracilaria gracilis GNS1m male)
ATGATGAACACACAACAGCGAGAAGAATCGCAACCGCTGCTGCGCGCCGC
TGGCGCTTGCGACGCGCGGCGGCGTGGCGCGGCTGCTTGGCCGATCGGCG
TGGCGGCCGTGCTGACGGTCGGCGCGCTGTGCGTGCTGTGCGCGCTGCTG
CTGCTGCGCGCGCGCAGCGTGGCGGCGGCGGCGGTTGAAGAGGCGGCGCA
GCACAGCGTGAGCATGCTGGTGATCGGCGACTGGGGGCGCGAGGCGCAGC
ACGGGCAGCCGGCCGTGGCGGAGGCGCTGGCGCGCGCCGTGGAGGAGGAG
CGAAGCCACTCGCGGCGCGTGGTGGTACTTTCCACCGGCGACAACTTCTA
CAAGACGGGCGTGTCTAGCGTGACGGACCGGCAGTTCAACTCGTCGTTCG
AGCACGTGTACCGACAGCCGGCGCTGGCCGACGTGCCGTGGCTGGTGGCG
CTCGGCAACCACGACCACCAGGGCAGCATCCAGGCGCAGGTGAACTACTC
GCGCGTGTCCAGCCGCTGGACCATGCCGGCGCCGTACTTTGCGCGCCGGC
TGTCGCCGTCGCTCACGGCGCTGTTCCTGGACACCACGCCGTTGGTGCTG
TCGCGCGGCAGCAGCGGCGCGCAGCAGCAGCTGCGCTGGCTGGCGGGCAC
GCTGGCGGCGCTGCCGGCGCGCGCGCGCTTCGTGCTGGTGGGCCACCACA
ACATGTACACCATGTCCATCGCCGACCATCTGGGCACGCCGTCGCTGCGC
GCGGCGCTACGGCCGCTGCTACGGCCGTACCGGCGGCGCATGCTGGCGTA
CGTGTCGGGGCACGAGCACTCGCTCATGCATCTGCAGGACGCGCACGGCG
GCGAGCACCTGGTGAGCGGCGCCGGCAGCAAACTGCACCGCATCGAGCGC
CCGCCGCGCGCGCAGGAGGCGCATTGGCGGCGCTGCTGCGACGTGCTGCC
GCTGCGCGCGCGCCGCGCCGCGCACGGCCGCACCGTGTGGGGGCGCGCCG
TGCACGGGCTGCTGGCCGTGCGCTTTGACGGCTCGCGCATGTCGCTGCGC
GCGCTGGGCGCCAACGGCGCCACGCTGTACGCCTACTCCAAGCGCGTCCC
ATAA
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Coding sequence (CDS) from alignment at tig00000189_pilon:120614..121717-

>Ggra3366.t1 ID=Ggra3366.t1|Name=Ggra3366.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1104bp|location=Sequence derived from alignment at tig00000189_pilon:120614..121717- (Gracilaria gracilis GNS1m male)
ATGATGAACACACAACAGCGAGAAGAATCGCAACCGCTGCTGCGCGCCGC
TGGCGCTTGCGACGCGCGGCGGCGTGGCGCGGCTGCTTGGCCGATCGGCG
TGGCGGCCGTGCTGACGGTCGGCGCGCTGTGCGTGCTGTGCGCGCTGCTG
CTGCTGCGCGCGCGCAGCGTGGCGGCGGCGGCGGTTGAAGAGGCGGCGCA
GCACAGCGTGAGCATGCTGGTGATCGGCGACTGGGGGCGCGAGGCGCAGC
ACGGGCAGCCGGCCGTGGCGGAGGCGCTGGCGCGCGCCGTGGAGGAGGAG
CGAAGCCACTCGCGGCGCGTGGTGGTACTTTCCACCGGCGACAACTTCTA
CAAGACGGGCGTGTCTAGCGTGACGGACCGGCAGTTCAACTCGTCGTTCG
AGCACGTGTACCGACAGCCGGCGCTGGCCGACGTGCCGTGGCTGGTGGCG
CTCGGCAACCACGACCACCAGGGCAGCATCCAGGCGCAGGTGAACTACTC
GCGCGTGTCCAGCCGCTGGACCATGCCGGCGCCGTACTTTGCGCGCCGGC
TGTCGCCGTCGCTCACGGCGCTGTTCCTGGACACCACGCCGTTGGTGCTG
TCGCGCGGCAGCAGCGGCGCGCAGCAGCAGCTGCGCTGGCTGGCGGGCAC
GCTGGCGGCGCTGCCGGCGCGCGCGCGCTTCGTGCTGGTGGGCCACCACA
ACATGTACACCATGTCCATCGCCGACCATCTGGGCACGCCGTCGCTGCGC
GCGGCGCTACGGCCGCTGCTACGGCCGTACCGGCGGCGCATGCTGGCGTA
CGTGTCGGGGCACGAGCACTCGCTCATGCATCTGCAGGACGCGCACGGCG
GCGAGCACCTGGTGAGCGGCGCCGGCAGCAAACTGCACCGCATCGAGCGC
CCGCCGCGCGCGCAGGAGGCGCATTGGCGGCGCTGCTGCGACGTGCTGCC
GCTGCGCGCGCGCCGCGCCGCGCACGGCCGCACCGTGTGGGGGCGCGCCG
TGCACGGGCTGCTGGCCGTGCGCTTTGACGGCTCGCGCATGTCGCTGCGC
GCGCTGGGCGCCAACGGCGCCACGCTGTACGCCTACTCCAAGCGCGTCCC
ATAA
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