Ggra3350.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3350.t1
Unique NameGgra3350.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length197
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000189_piloncontigtig00000189_pilon:81480..82070 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog81824.XP_001742777.1
Preferred nameALG13
PFAMsGlyco_tran_28_C
Max annot lvl33154|Opisthokonta
KEGG koko:K07432
KEGG ReactionR05970
KEGG Pathwayko00510,ko00513,ko01100,map00510,map00513,map01100
KEGG ModuleM00055
GOsGO:0003674,GO:0003824,GO:0004577,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0006464,GO:0006486,GO:0006487,GO:0006488,GO:0006490,GO:0006629,GO:0006807,GO:0008150,GO:0008152,GO:0008194,GO:0008375,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0012505,GO:0016020,GO:0016740,GO:0016757,GO:0016758,GO:0019538,GO:0019898,GO:0031090,GO:0031312,GO:0031984,GO:0032991,GO:0034645,GO:0036211,GO:0042175,GO:0042406,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0043541,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0070085,GO:0071704,GO:0098796,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
Evalue1.07e-23
EggNOG OGsCOG5017@1|root,KOG3349@2759|Eukaryota,3A88H@33154|Opisthokonta
EC2.4.1.141
DescriptionInvolved in protein N-glycosylation. Essential for the second step of the dolichol-linked oligosaccharide pathway
COG categoryS
CAZyGT1
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3350Ggra3350Gracilaria gracilis GNS1m malegenetig00000189_pilon 81480..82070 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3350.t1.start1Ggra3350.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000189_pilon 81480..81482 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3350.t1.CDS1Ggra3350.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000189_pilon 81480..82070 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3350.t1.exon1Ggra3350.t1.exon1Gracilaria gracilis GNS1m maleexontig00000189_pilon 81480..82070 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3350.t1.stop1Ggra3350.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000189_pilon 82068..82070 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3350.t1Ggra3350.t1Gracilaria gracilis GNS1m malepolypeptidetig00000189_pilon 81480..82070 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3350.t1 ID=Ggra3350.t1|Name=Ggra3350.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=197bp
MAARGGDDDDDAAGTTLLVTVGSTQFAALTDFVALPSTLADLHALGISHV
TLQHGSHTPTLPAPGERPPVLQPLRYSPQLPDMLRHADVVVSHAGAGTVL
EAVDARRPLVVVVNDALMHNHQTELADAMQRCGCCVVVSAHSLPDRLVPA
IKQVLAAAHSRHASPPPRATGVFAAIVAEELAQVRVASPPTHHHPQ*
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spliced messenger RNA

>Ggra3350.t1 ID=Ggra3350.t1|Name=Ggra3350.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=591bp|location=Sequence derived from alignment at tig00000189_pilon:81480..82070+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
atggcggcgcgcggcggcgacgacgacgacgacgcggcggGCACCACGCT
GCTGGTGACGGTGGGGTCGACGCAGTTCGCCGCGCTCACCGACTTCGTGG
CGCTGCCGTCCACGCTGGCCGACCTGCACGCGCTGGGCATATCGCATGTC
ACGCTGCAGCACGGCAGCCACAcgcccacgctgcccgcgcccggcgagcg
cccgcCCGTGCTGCAGCCGCTGCGCTACTCGCCGCAGCTGCCGGACATGC
TGCGCCACGCCGACGTCGTCGTGTCGCACGCCGGCGCCGGCACAGTGCTG
GAGGCCGTCGATGCGCGCCGCCCGCTCGTCGTCGTCGTCAACGACGCGCT
CATGCACAACCACCAGACCGAGCTGGCCGACGCCATGCAGCGCTGCGGCT
GTTGCGTCGTCGTCAGCGCCCACAGCCTGCCCGACCGCCTGGTGCCCGCC
ATCAAGCAGGTGCTCGCCGCCGCTCACAGCCGCCATGCATCCCCCCCGCC
GCGCGCCACTGGCGTCTTTGCCGCCATCGTTGCGGAGGAACTGGCGCAAG
TGCGCGTAGCAAGTCCTCCTACGCATCATCACCCCCAATAA
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protein sequence of Ggra3350.t1

>Ggra3350.t1 ID=Ggra3350.t1|Name=Ggra3350.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=197bp
MAARGGDDDDDAAGTTLLVTVGSTQFAALTDFVALPSTLADLHALGISHV
TLQHGSHTPTLPAPGERPPVLQPLRYSPQLPDMLRHADVVVSHAGAGTVL
EAVDARRPLVVVVNDALMHNHQTELADAMQRCGCCVVVSAHSLPDRLVPA
IKQVLAAAHSRHASPPPRATGVFAAIVAEELAQVRVASPPTHHHPQ*
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mRNA from alignment at tig00000189_pilon:81480..82070+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3350.t1 ID=Ggra3350.t1|Name=Ggra3350.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=591bp|location=Sequence derived from alignment at tig00000189_pilon:81480..82070+ (Gracilaria gracilis GNS1m male)
atggcggcgcgcggcggcgacgacgacgacgacgcggcggGCACCACGCT
GCTGGTGACGGTGGGGTCGACGCAGTTCGCCGCGCTCACCGACTTCGTGG
CGCTGCCGTCCACGCTGGCCGACCTGCACGCGCTGGGCATATCGCATGTC
ACGCTGCAGCACGGCAGCCACAcgcccacgctgcccgcgcccggcgagcg
cccgcCCGTGCTGCAGCCGCTGCGCTACTCGCCGCAGCTGCCGGACATGC
TGCGCCACGCCGACGTCGTCGTGTCGCACGCCGGCGCCGGCACAGTGCTG
GAGGCCGTCGATGCGCGCCGCCCGCTCGTCGTCGTCGTCAACGACGCGCT
CATGCACAACCACCAGACCGAGCTGGCCGACGCCATGCAGCGCTGCGGCT
GTTGCGTCGTCGTCAGCGCCCACAGCCTGCCCGACCGCCTGGTGCCCGCC
ATCAAGCAGGTGCTCGCCGCCGCTCACAGCCGCCATGCATCCCCCCCGCC
GCGCGCCACTGGCGTCTTTGCCGCCATCGTTGCGGAGGAACTGGCGCAAG
TGCGCGTAGCAAGTCCTCCTACGCATCATCACCCCCAATAA
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Coding sequence (CDS) from alignment at tig00000189_pilon:81480..82070+

>Ggra3350.t1 ID=Ggra3350.t1|Name=Ggra3350.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=591bp|location=Sequence derived from alignment at tig00000189_pilon:81480..82070+ (Gracilaria gracilis GNS1m male)
atggcggcgcgcggcggcgacgacgacgacgacgcggcggGCACCACGCT
GCTGGTGACGGTGGGGTCGACGCAGTTCGCCGCGCTCACCGACTTCGTGG
CGCTGCCGTCCACGCTGGCCGACCTGCACGCGCTGGGCATATCGCATGTC
ACGCTGCAGCACGGCAGCCACAcgcccacgctgcccgcgcccggcgagcg
cccgcCCGTGCTGCAGCCGCTGCGCTACTCGCCGCAGCTGCCGGACATGC
TGCGCCACGCCGACGTCGTCGTGTCGCACGCCGGCGCCGGCACAGTGCTG
GAGGCCGTCGATGCGCGCCGCCCGCTCGTCGTCGTCGTCAACGACGCGCT
CATGCACAACCACCAGACCGAGCTGGCCGACGCCATGCAGCGCTGCGGCT
GTTGCGTCGTCGTCAGCGCCCACAGCCTGCCCGACCGCCTGGTGCCCGCC
ATCAAGCAGGTGCTCGCCGCCGCTCACAGCCGCCATGCATCCCCCCCGCC
GCGCGCCACTGGCGTCTTTGCCGCCATCGTTGCGGAGGAACTGGCGCAAG
TGCGCGTAGCAAGTCCTCCTACGCATCATCACCCCCAATAA
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