Ggra3376.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra3376.t1
Unique NameGgra3376.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length305
Homology
BLAST of Ggra3376.t1 vs. uniprot
Match: A0A2V3IMZ1 (Methionine adenosyltransferase 2 subunit beta n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMZ1_9FLOR)

HSP 1 Score: 488 bits (1255), Expect = 2.870e-172
Identity = 233/303 (76.90%), Postives = 266/303 (87.79%), Query Frame = 0
Query:    1 MGTLVIIGATGELGSKTVLAACADDAAAWQGDIIATYNNNPPVLGLPRVTWVKLDCSDHKAVRSLIVSLAELAAVVYCAVPKHGGAADKGGGLVRAGIVDDVLNCAEAVALIDARFVAVSTDLVFDGRIPEGECYDEASQTCPPNPYGVYKQQMEQQLLALSGNIVVARSSLILTMDQPPYGKGIQFVVDCINGKKGEIELFTDEWRNMSFSDDLGRALVELAKPQCTHVGIIHMVSDEVTNRWELAKLLAKRLGLEDKLGKFAKSGLSAESGLDRPLNCALSTKLKNKVLNTHIDGISERLS 303
            MGTLV+IG TGELG K VLAACAD   AW G I+ATYNN+PP    P+V W+ LDC+DHKAVRS I+S   L+ V+YCAVPKHGGAA KGG LVRAGIVDDV+NCAEAV ++ A+FVAVSTDLVFDG +P  +CY+E+S TCPPNPYG YKQ ME+QLL LSG+I++AR+SLILTMD+PP+GK IQFVVDCINGK GEIELFTDE RNMSFSDDLGRALVELAKPQCTHVG+IHMVSDEVTNRWELAKLLAKRL L+  LGK+AKSG+SAESGL+RPLNC+LST+LKNKVL THIDG+SERL+
Sbjct:    1 MGTLVVIGGTGELGRKAVLAACADAPTAWSGSIVATYNNSPPPFTSPKVQWLHLDCADHKAVRSFILSQTHLSTVIYCAVPKHGGAAGKGGNLVRAGIVDDVVNCAEAVTIVAAKFVAVSTDLVFDGNLPPSDCYNESSPTCPPNPYGQYKQHMERQLLNLSGSIIIARTSLILTMDEPPFGKAIQFVVDCINGKHGEIELFTDELRNMSFSDDLGRALVELAKPQCTHVGLIHMVSDEVTNRWELAKLLAKRLNLQHNLGKWAKSGISAESGLNRPLNCSLSTELKNKVLKTHIDGLSERLA 303          
BLAST of Ggra3376.t1 vs. uniprot
Match: M2X7W7 (Methionine adenosyltransferase 2 subunit beta n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2X7W7_GALSU)

HSP 1 Score: 212 bits (540), Expect = 8.850e-64
Identity = 128/304 (42.11%), Postives = 190/304 (62.50%), Query Frame = 0
Query:    4 LVIIGATGELGSKTVLAACADDAAAWQGD-IIATYNNNPPVLGLPRVT---WVKLDCSDHKAVRSLIVSLAELAAVVYCAVPKHGGAADKGGGLVRAGIVDDVLNCAEAVALIDARFVAVSTDLVFDGRIPEGECYDEASQTCPPNPYGVYKQQMEQQLLALSGNIVVARSSLILTMDQPPYGKGIQFVVDCINGKKGEIELFTDEWRNMSFSDDLGRALVELAKPQCTHVGIIHMVSDEVTNRWELAKLLAKRLGLEDKLGKFAKSGLSAESGLDRPLNCALSTKLKNKVLNTHIDGISERLS 303
            L+I+GATGELGS TV A+   ++  W+   I ATY  + P    P  +   W  LD +DH+++R L++ ++  + V+ C+VP H GA+ +    +R GIV++V+  AEA  +I ARF+AVSTD VFDG++  G  Y E     P NPY   K +ME+QLL L G+I++ R+SL+LT++ P  GK ++F++D +   +  IE+FTDE RNMSFS+DLG AL E++ P     G++H+ SDE  +R++LA  LA     ++K  K A+S  S +    RPLN +L       +L T I GIS+RL+
Sbjct:   11 LLIVGATGELGSATVQAS--SNSPFWRDKKIYATYFRHVPTNTHPLFSVAVWNFLDLNDHESIRRLLLEISPTS-VICCSVPSHQGASSQYTNFLRQGIVENVVALAEASKMIGARFIAVSTDQVFDGKLKNGR-YKEDDPIRPTNPYASCKAEMEEQLLRLGGDILICRTSLVLTLEPP--GKAVRFILDALE-PESNIEIFTDELRNMSFSEDLGSALCEVSVPGHPARGLLHLCSDEPVSRYDLALKLAPYFRKDEKNIKTARSAASKQF---RPLNLSLDNSKAKSLLRTEIRGISKRLA 304          
BLAST of Ggra3376.t1 vs. uniprot
Match: A0A6B2LAZ2 (Methionine adenosyltransferase 2 subunit beta n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LAZ2_9EUKA)

HSP 1 Score: 207 bits (528), Expect = 4.700e-62
Identity = 130/306 (42.48%), Postives = 191/306 (62.42%), Query Frame = 0
Query:    4 LVIIGATGELGSKTVLAACADDAAAWQGDIIATYNNNPPVLGLPRVTWVKLDCSDHKAVRSLIVSLAELAAVVYCAVPKHGGAADKGGGLVRAGIVDDVLNCAEAVALIDA-RFVAVSTDLVFDGRIPEGECYDEASQTCPPNPYGVYKQQMEQQLLALS-GNIVVARSSLILTMDQPPYGKGIQFVVDCINGKKGEIELFTDEWRNMSFSDDLGRALVELAKPQCTHV--GIIHMVSDEVTNRWELAKLLAKRLGLE-DKLGKFAKSGLSAESGLDRPLNCALSTKLKNKVL--NTHIDGISERL 302
            +++IG  GELGS  ++ AC+  ++ +  +  ATY++ PP  G  +V WV+LDC DH AV  ++ S+   A ++Y AVP HGGAA  GG  VR GIVDDV+  A      ++ RF+A+STD VFDG+      Y E S   P NPY  YK +ME +LLAL   ++V+ R+SLILT+D P  GK I FV+  + G+  ++ L+TDE RNMS+S DL +AL++L+  + +    GI+H+ + E+T+R+ LA  L +  G+E DK+    K GLSA SG +RPL+ ++ T L  + L   T + G  + L
Sbjct:    1 MLVIGGCGELGSA-IVRACS--SSKYNFEAFATYHSKPPPEGEGKVRWVRLDCGDHGAVEGVLESVRPTA-IIYAAVPNHGGAAGLGGAGVRKGIVDDVVFTARRSNQSNSVRFLAISTDQVFDGK--SASLYSETSAKNPTNPYATYKSEMEDELLALKLPDLVICRTSLILTLDPP--GKAISFVLSALKGQS-QVTLYTDELRNMSWSGDLAQALLDLSFHEHSRQLKGIVHLAAGEITDRYHLALQLGQLYGMETDKV----KPGLSALSGTNRPLDLSMDTTLLKQWLPQGTRLQGALQYL 293          
BLAST of Ggra3376.t1 vs. uniprot
Match: A0A5J4Z666 (Uncharacterized protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z666_PORPP)

HSP 1 Score: 186 bits (472), Expect = 8.590e-53
Identity = 147/376 (39.10%), Postives = 196/376 (52.13%), Query Frame = 0
Query:    4 LVIIGATGELGSKTVLAACA---DDAAAWQGDIIATYNNNPP----------VLGLP--RVTWVKLDCSDHKAVRSLIVSLAELA-----AVVYCAVPKHGGAADKGGGLVRAGIVDDVLNCAEAVALIDARFVAVSTDLVFDGRIP----------EGECYDEA-------------SQTCPPNPYGVYKQQMEQQLLALSGN------IVVARSSLILTMDQPPY-----------------------GKGIQFVVDCI-NGKKGEIELFTDEWRNMSFSDDLGRALVELAKPQC---THVGIIHMVSDEVTNRWELAKLLAKRLGLEDKLGKFAKSGLSAESGLDRPLNCALST-KLKNKVLNTHIDGISERL 302
            +++IGA GELG     A C+   D   A    ++ TY    P          + G+    VT ++LD SDH AV+ LI + ++       AV++CAVPKHGGAA  GG  VRAGIVDDV+  A        RFVA+STD VFDG+            +   +D A               TCP NPYG YK +ME+ LL L+ +      +++AR+SLIL +  PP                        GK ++FV++ I N ++  + LFTDE RNMSF+DDLG AL ELA  +       GI+++VSDE TNR+ELA  LA  LG+       A  G S  SGL+RPL+ +LST KL    L T + G+SERL
Sbjct:    3 VIVIGAGGELGFHACEAVCSVLLDTGRA--SSLVMTYRATRPGHVSRVLAERLQGMKDGSVTEIQLDTSDHAAVQRLIEAESDRLGSTGLAVLFCAVPKHGGAASTGGTAVRAGIVDDVVFAARETMSRGGRFVAISTDQVFDGKPKTSTPIRSEGCDATAHDRARADLNLYTEDPEQDPTCPTNPYGQYKVEMEKSLLELAKSNGWDHLLLIARTSLILGL--PPLLREFTGNSDPAAVQLDDALLADSGKAVRFVLNAISNSEQKPLVLFTDEPRNMSFADDLGCALAELAVERAHDENATGILNLVSDEPTNRYELALRLAATLGMTQCN---AVPGESKTSGLNRPLDLSLSTHKLHALGLRTRLRGVSERL 371          
BLAST of Ggra3376.t1 vs. uniprot
Match: M1VA84 (Similar to dTDP-4-dehydrorhamnose reductase n=2 Tax=cellular organisms TaxID=131567 RepID=M1VA84_CYAM1)

HSP 1 Score: 169 bits (428), Expect = 1.860e-46
Identity = 130/315 (41.27%), Postives = 168/315 (53.33%), Query Frame = 0
Query:    4 LVIIGATGELGSKTVLAAC-ADDAAAWQG--DIIATYNNNPPVL------GLPRVTWVKLDCSDHKAVRSLI----VSLAELAAVVYCAVPKHGGAADKGGGLVRAGIVDDVLNCAEAVALI---------DARFVAVSTDLVFDGRIPEGECYDEASQTCPPNPYGVYKQQMEQQLLALSG-NIVVARSSLILTMDQPPY--GKGIQFVVDC-INGKKGEIELFTDEWRNMSFSDDLGRALVELAKP-QCTHVG-------IIHMVSDEVTNRWELA-KLLAKRLG-LEDKLGKFAKSGLSAESGLDRPLNCAL 282
            L++IG +GELGS  V AA  A +     G   + ATY    P +        P V W  LD +D +A   LI      +  L  VV+CAVPKHGGAA  GG  +R+GIVD VL  AEA  L            RFVA+STD VFDG +P    Y   +   P NPYG YK +ME  L  +   ++V+AR+SLILT+   P+  GK I F+    I   +  + LFTDE RNMS+S+DL  ALVE+A   +C  V        +IH+   E TNR+ LA +LL+ R      +       GLSAESGL RPL+  +
Sbjct:   23 LLVIGGSGELGSALVRAAAEAAETPTVSGVRAVWATYRTRRPSVCTPVGSKAPSVRWFYLDTADRRATSDLIQRASTEIGPLLTVVFCAVPKHGGAAGPGGDDIRSGIVDHVLYAAEATKLAGMVEGAERSSCRFVAISTDQVFDG-VPPHPPYTTDAPRRPLNPYGHYKVEMEDTLQNIHHPDLVIARTSLILTLGMQPHEDGKAIAFLRSALIETHEKPLVLFTDEIRNMSWSNDLAEALVEVATAIRCERVTMDGDTATVIHLACPETTNRFALAQRLLSTRWSEYRHRAAGRITPGLSAESGLRRPLDLTM 336          
BLAST of Ggra3376.t1 vs. uniprot
Match: A0A7S0BGS0 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BGS0_9RHOD)

HSP 1 Score: 162 bits (409), Expect = 3.080e-46
Identity = 87/148 (58.78%), Postives = 110/148 (74.32%), Query Frame = 0
Query:  156 QQLLALSGNIVVARSSLILTMDQPPYGKGIQFVVDCINGKKGEIELFTDEWRNMSFSDDLGRALVELAKPQCTHVGIIHMVSDEVTNRWELAKLLAKRLGLEDKLGKFAKSGLSAESGLDRPLNCALSTKLKNKVLN-THIDGISERL 302
            ++LL L+G I++ R+SLILTMD  P GKGI+FVV C+ G  GEI LFTDE RNM+FSDDLG  LVELA+  C   G+IH+VSDE+TNR+EL+K+L+K LG+E     F KSGLS ESG++RP N +L T L   VL  T + G+SERL
Sbjct:    1 KRLLTLAGPIIICRTSLILTMD--PMGKGIEFVVKCLRGDMGEIVLFTDELRNMTFSDDLGSGLVELAESTCEFRGVIHLVSDEITNRYELSKMLSKVLGIETD---FVKSGLSTESGMNRPANLSLDTTLIKSVLKRTKLRGVSERL 143          
BLAST of Ggra3376.t1 vs. uniprot
Match: A0A7S0BHT0 (Methionine adenosyltransferase 2 subunit beta n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BHT0_9RHOD)

HSP 1 Score: 136 bits (343), Expect = 2.250e-36
Identity = 70/143 (48.95%), Postives = 94/143 (65.73%), Query Frame = 0
Query:   29 WQGD---IIATYNNN-PPVLGLPRVTWVKLDCSDHKAVRSLIVSLAELAAVVYCAVPKHGGAADKGGGLVRAGIVDDVLNCAEAVALIDARFVAVSTDLVFDGRIPEGECYDEASQTCPPNPYGVYKQQMEQQLLALSGNIVV 167
            W G    + ATY++  P    L    W++LDCSDH+A+R  I+ +     V+YCAVPKHGGAA KGG  V +GIVDDV+  AEA  ++ ARF+A+STD VFDG++ EG  Y E  +  P NPY  YK  ME++LL L+G I++
Sbjct:    3 WSGGRDGLWATYHSTLPDEEPLNAAQWIQLDCSDHEAIRETIMKINPNG-VIYCAVPKHGGAAGKGGDKVMSGIVDDVVAAAEASVILGARFIAISTDQVFDGKLGEGLYYKETDEISPTNPYASYKTVMEKRLLTLAGPIII 144          
BLAST of Ggra3376.t1 vs. uniprot
Match: A0A7S1EP92 (Hypothetical protein (Fragment) n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1EP92_9RHOD)

HSP 1 Score: 119 bits (299), Expect = 3.980e-29
Identity = 79/195 (40.51%), Postives = 113/195 (57.95%), Query Frame = 0
Query:    2 GTLVIIGATGELGSKTVLAACADDAAAWQGDIIATYNNNPPVLGLPRVTWVKLDCSDHKAVRSLIVSLA-ELAAVVYCAVPKHGGAADKGGGLVRAGIVDDVLNCAEAVALIDARFVAVSTDLVFDGRI---------PEGECYDEASQTC--PPNPYGVYKQQMEQQLLALS------GNIVVARSSLILTMDQ 178
            G++++IGA GELG +  L A           ++ T  N+P      RV   K+DCS+   V  L  ++A ELAAV+YCAVP HGGAA +    ++AG++DDV+  A+    + ARFVA+STD VF+G I          EG+  DE+S+    P NPYG YK QME +L  L+        +++AR+SLILT+ +
Sbjct:    5 GSVLVIGAGGELGYQVALKAFD---MIGSDRVVCTIRNSPAPSQCTRV--FKIDCSNRNQVAQLFDTMASELAAVIYCAVPTHGGAASQESAQLKAGLIDDVVFAAKTTFSLGARFVAISTDQVFNGDIIAPGKLNLYKEGD--DESSKNALKPRNPYGRYKLQMETELELLAKEMHCESKLIIARTSLILTLPE 192          
BLAST of Ggra3376.t1 vs. uniprot
Match: A0A6J4I664 (dTDP-4-dehydrorhamnose reductase n=1 Tax=uncultured Chloroflexia bacterium TaxID=1672391 RepID=A0A6J4I664_9CHLR)

HSP 1 Score: 117 bits (294), Expect = 1.410e-27
Identity = 101/301 (33.55%), Postives = 147/301 (48.84%), Query Frame = 0
Query:    3 TLVIIGATGELGSKTVLAACADDAAAWQGDIIATYNNNPPVLGLPRVTWVKLDCSDHKAVRSLIVSLAELAAVVYCAVPKHGGAADKGGGLVRAGIVDDVLNCAEAVALIDARFVAVSTDLVFDGRIPEGECYDEASQTCPPNPYGVYKQQMEQQLLALSGNIVVARSSLILTMDQPPYGKGIQFVVDCINGKKGEIELFTDEWRNMSFSDDLGRALVELAKPQCTHVGIIHMVSDEVTNRWELAKLLAKRLGLEDKLGKFAKSGLSAESGLDRPLNCALSTKLKNKVLNTHIDGISERLS 303
            TL+I GA+G+LG +   AA A   A W+  +  TY   P  + +P V W +LD      V +L+ +     AVV+ A    G     G   + A   D   + A A A + AR + +S+D +FDG   E   Y EA    P  PYG  K   E  + AL     + R+SLI+  D  P     + ++D   G++  + LFTDE R    + DL  A++EL      + G +H+V  +  +R+EL  L+A+R  L+  L   A S L AESGL RP +  L T     +L T + G+ E LS
Sbjct:    4 TLLITGASGQLGRRVARAAAA---ARWR--VTGTYLREP--VEIPSVEWKRLDLQHRDDVDALVCATRP-DAVVHTAFLLAG----PGFWTINA---DGAAHVARATAEVGARLIHISSDSIFDG---EHAPYSEADAPSPITPYGASKAAAETAVGALLPGAAIVRTSLIV--DDDPLDNHSRMIMDIAAGRRS-VALFTDEIRCPIAAADLAAAVIELI--DLPYAGPLHVVGPDDVSRYELGTLVARRYALDPAL--LAASTL-AESGLRRPADLRLDTGRARDLLRTPLRGVREFLS 278          
BLAST of Ggra3376.t1 vs. uniprot
Match: A0A7J7IGV3 (Methionine adenosyltransferase 2 subunit beta n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IGV3_9RHOD)

HSP 1 Score: 115 bits (288), Expect = 3.070e-27
Identity = 85/211 (40.28%), Postives = 121/211 (57.35%), Query Frame = 0
Query:  110 ALIDARFVAVSTDLVFDGRIPEGECYDEASQTCPPNPYGVYKQQMEQQLLAL-SGNIVVARSSLILTMDQPPY--GKGIQFVVDCINGKKGE-IELFTDEWRNMSFSDDLGRALVELAKP-QCTHVG-------IIHMVSDEVTNRWELAKLLAKRLGLEDKLGKFAK--SGLSAESGLDRPLNCALSTKLKNK---VLNTHIDGISERLS 303
            A +  RFVA+STD VFDG +P    Y       P NPYG YK +ME +L +L   ++V+AR+SLILT+ + P   GK I F+ + ++  +   + LF DE RNMS+S+DL +AL+E+A   QC           IIH+   E TNR+EL + L  +  +E      A+  +GLSAESGL RPL+  ++ +   +   V  TH+  I E LS
Sbjct:   19 AHLKCRFVAISTDQVFDG-VPPHAPYLTKDPRRPLNPYGRYKVEMENELCSLVHPDLVIARTSLILTLGRTPSQDGKAIAFLRNALSSDRDSPVVLFVDEIRNMSWSEDLAQALLEIATCIQCDSDDERGCAPTIIHLACSETTNRFELVQCLLAKQWVEYHPFATARIVAGLSAESGLHRPLDLTMNVESMVETGLVTRTHLRSIHEYLS 228          
The following BLAST results are available for this feature:
BLAST of Ggra3376.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IMZ12.870e-17276.90Methionine adenosyltransferase 2 subunit beta n=1 ... [more]
M2X7W78.850e-6442.11Methionine adenosyltransferase 2 subunit beta n=1 ... [more]
A0A6B2LAZ24.700e-6242.48Methionine adenosyltransferase 2 subunit beta n=1 ... [more]
A0A5J4Z6668.590e-5339.10Uncharacterized protein n=1 Tax=Porphyridium purpu... [more]
M1VA841.860e-4641.27Similar to dTDP-4-dehydrorhamnose reductase n=2 Ta... [more]
A0A7S0BGS03.080e-4658.78Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S0BHT02.250e-3648.95Methionine adenosyltransferase 2 subunit beta n=1 ... [more]
A0A7S1EP923.980e-2940.51Hypothetical protein (Fragment) n=1 Tax=Timspurcki... [more]
A0A6J4I6641.410e-2733.55dTDP-4-dehydrorhamnose reductase n=1 Tax=unculture... [more]
A0A7J7IGV33.070e-2740.28Methionine adenosyltransferase 2 subunit beta n=1 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029903RmlD-like substrate binding domainPFAMPF04321RmlD_sub_bindcoord: 4..294
e-value: 2.5E-24
score: 85.9
NoneNo IPR availableGENE3D3.40.50.720coord: 3..302
e-value: 9.4E-37
score: 129.2
NoneNo IPR availablePANTHERPTHR43242NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEINcoord: 3..302
IPR036291NAD(P)-binding domain superfamilySUPERFAMILY51735NAD(P)-binding Rossmann-fold domainscoord: 3..297

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000189_piloncontigtig00000189_pilon:161838..162752 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3376.t1Ggra3376.t1Gracilaria gracilis GNS1m malemRNAtig00000189_pilon 161838..162752 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra3376.t1 ID=Ggra3376.t1|Name=Ggra3376.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=305bp
MGTLVIIGATGELGSKTVLAACADDAAAWQGDIIATYNNNPPVLGLPRVT
WVKLDCSDHKAVRSLIVSLAELAAVVYCAVPKHGGAADKGGGLVRAGIVD
DVLNCAEAVALIDARFVAVSTDLVFDGRIPEGECYDEASQTCPPNPYGVY
KQQMEQQLLALSGNIVVARSSLILTMDQPPYGKGIQFVVDCINGKKGEIE
LFTDEWRNMSFSDDLGRALVELAKPQCTHVGIIHMVSDEVTNRWELAKLL
AKRLGLEDKLGKFAKSGLSAESGLDRPLNCALSTKLKNKVLNTHIDGISE
RLSK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR029903RmlD-like-bd
IPR036291NAD(P)-bd_dom_sf