Ggra3354.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3354.t1
Unique Name	Ggra3354.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	661

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000189_pilon	contig	tig00000189_pilon:89687..91669 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4006.Lus10023989
PFAMs	ACT,Pkinase_Tyr
Max annot lvl	33090\|Viridiplantae
Evalue	1.43e-27
EggNOG OGs	COG0515@1\|root,KOG0192@2759\|Eukaryota,37N3E@33090\|Viridiplantae
Description	serine threonine-protein kinase
COG category	T

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3354	Ggra3354	Gracilaria gracilis GNS1m male	gene	tig00000189_pilon 89687..91669 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3354.t1.stop1	Ggra3354.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000189_pilon 89687..89689 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3354.t1.CDS1	Ggra3354.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000189_pilon 89687..91669 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3354.t1.exon1	Ggra3354.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000189_pilon 89687..91669 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3354.t1.start1	Ggra3354.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000189_pilon 91667..91669 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3354.t1	Ggra3354.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000189_pilon 89687..91669 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000189_pilon:89687..91669-
coding sequence from alignment at tig00000189_pilon:89687..91669-

mRNA sequence

>Ggra3354.t1 ID=Ggra3354.t1|Name=Ggra3354.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=661bp
MNNDERAAVQNEQNFFAGAISFQKPSTNCITAVRLRFDSDGDLFFDFATV
GSGLYTVCVVLKDKNNLEWKECQALSAVMQMSQRGTEMNPVIFGNCLKTI
ASNLGRVDGPTTLQGFSIATVIPGTSSMRVTDPDTIISTGLEFDNDGDIL
MISRTKRGSVYVICIRLHLNNMALTVLEGDAFSGSLQLLETGDVLSPDKF
LAMAVALKKMFNNLTVSTKNGQYIISMLPTPVQNNTPLPSIVFEAAQRVL
PSLQTGPGPAASSTTSVGPYKDIRVMRPLKQSGQAQVYEGMKGSTKIALK
VYQDLANQPDDSFKTEVKMLLKMSYHNNVVTVLDFFEKPKPAIAMEFVDG
QDLWDYLESSCRLSEPDALKLTIGIAEGLYHLHRNNIIHLDMKTPNILRR
TDGTPVIIDLGLSAVVEKGDNPRSGGSRGGQIRGSMTIRGSASTIRETYR
MQKTRGGKGSLLWMAPEMIAESEWSDRTDVYAFGIIMWEVFSGKQPFIYD
LPDSTTVDSLKVKIATGFRPHLKHVSHIDKKLTRIISMCWHRDPKQRPTM
MRVLDMLRRTDPKALFESFDHDDSGTLEYSEFVKFLEKYAAHVRDPHKIS
ALFKAIDLDSSGSICFEEFEAFWSSVQTHGLAAYISNQGARKVQAVREKR
PRRSDDCRIQ*

spliced messenger RNA

>Ggra3354.t1 ID=Ggra3354.t1|Name=Ggra3354.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1983bp|location=Sequence derived from alignment at tig00000189_pilon:89687..91669- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAATAACGACGAAAGGGCTGCTGTTCAAAACGAACAAAACTTCTTTGC
CGGAGCTATAAGCTTCCAGAAACCTTCAACAAACTGCATTACAGCCGTTC
GTCTACGATTCGATAGCGATGGTGATCTTTTCTTCGACTTCGCTACAGTT
GGCAGCGGCCTCTACACAGTCTGCGTCGTTCTCAAGGATAAAAACAACCT
AGAATGGAAAGAATGCCAAGCGTTATCTGCAGTTATGCAAATGTCTCAGC
GTGGAACAGAAATGAACCCCGTCATCTTTGGCAATTGTCTCAAAACAATC
GCAAGCAATCTAGGTAGAGTGGATGGTCCAACGACTCTGCAAGGTTTCTC
CATCGCTACAGTTATTCCTGGGACTTCATCTATGCGCGTCACAGATCCGG
ACACAATCATATCCACTGGTTTGGAATTTGACAATGACGGGGATATTCTC
ATGATATCTCGAACAAAACGTGGGTCGGTATATGTCATCTGCATCCGACT
GCATCTGAACAATATGGCACTAACCGTACTAGAAGGGGATGCGTTTTCGG
GATCCCTACAATTGCTGGAAACAGGAGATGTGTTGTCCCCCGATAAATTC
CTCGCTATGGCTGTGGCATTGAAGAAAATGTTTAACAACCTTACTGTTTC
AACGAAAAATGGGCAGTACATTATTTCTATGCTTCCTACTCCTGTTCAAA
ACAATACGCCACTTCCAAGTATTGTTTTTGAGGCGGCCCAAAGAGTGTTG
CCGTCTTTGCAGACCGGACCAGGTCCTGCTGCAAGTTCAACGACGAGTGT
TGGTCCTTACAAAGATATACGTGTAATGAGGCCTCTTAAACAAAGCGGTC
AAGCTCAAGTGTATGAAGGAATGAAGGGGTCCACAAAGATTGCGCTCAAG
GTGTACCAGGATCTGGCAAATCAGCCCGATGATTCCTTCAAAACTGAAGT
AAAGATGCTCCTCAAGATGTCCTACCACAATAATGTGGTAACTGTTCTGG
ACTTCTTTGAAAAGCCCAAACCAGCAATCGCTATGGAGTTCGTCGATGGC
CAAGACCTTTGGGATTACTTAGAAAGCAGCTGTCGGCTAAGCGAACCAGA
TGCACTGAAGCTTACGATTGGTATTGCAGAAGGTTTATATCATTTACATC
GGAACAACATCATTCACCTCGATATGAAAACCCCTAACATTTTGAGACGG
ACAGACGGTACTCCCGTCATAATAGATCTCGGCCTAAGTGCAGTAGTTGA
AAAGGGTGACAATCCTCGCTCGGGCGGCAGTAGGGGAGGTCAAATCAGAG
GAAGCATGACTATTCGCGGTTCAGCTTCAACCATTCGCGAAACCTATAGA
ATGCAGAAAACACGTGGAGGAAAAGGAAGTCTCCTCTGGATGGCACCGGA
AATGATTGCTGAAAGTGAATGGAGTGATCGAACTGATGTGTACGCGTTTG
GAATTATCATGTGGGAAGTTTTCTCTGGAAAGCAGCCTTTCATCTATGAC
CTGCCAGACAGCACTACGGTGGACTCGCTGAAAGTGAAGATTGCAACTGG
TTTTCGGCCGCACCTGAAACATGTTTCGCACATAGACAAGAAGCTGACGA
GAATCATTTCGATGTGCTGGCACAGGGATCCAAAACAACGTCCGACGATG
ATGCGTGTGCTGGACATGCTTCGAAGGACGGACCCAAAGGCTCTATTTGA
GAGCTTCGACCATGACGATAGCGGAACTCTTGAATACTCAGAGTTCGTGA
AATTCTTGGAGAAATATGCGGCTCATGTTCGGGACCCACACAAAATTTCA
GCACTGTTCAAAGCAATCGATTTGGATAGTTCAGGGAGTATATGCTTCGA
GGAATTCGAAGCGTTTTGGTCGTCAGTTCAGACTCACGGTCTCGCGGCGT
ACATTTCGAATCAAGGAGCGAGAAAGGTGCAGGCTGTCAGAGAAAAAAGG
CCAAGGCGTTCCGATGACTGCAGAATACAATAA

protein sequence of Ggra3354.t1

>Ggra3354.t1 ID=Ggra3354.t1|Name=Ggra3354.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=661bp
MNNDERAAVQNEQNFFAGAISFQKPSTNCITAVRLRFDSDGDLFFDFATV
GSGLYTVCVVLKDKNNLEWKECQALSAVMQMSQRGTEMNPVIFGNCLKTI
ASNLGRVDGPTTLQGFSIATVIPGTSSMRVTDPDTIISTGLEFDNDGDIL
MISRTKRGSVYVICIRLHLNNMALTVLEGDAFSGSLQLLETGDVLSPDKF
LAMAVALKKMFNNLTVSTKNGQYIISMLPTPVQNNTPLPSIVFEAAQRVL
PSLQTGPGPAASSTTSVGPYKDIRVMRPLKQSGQAQVYEGMKGSTKIALK
VYQDLANQPDDSFKTEVKMLLKMSYHNNVVTVLDFFEKPKPAIAMEFVDG
QDLWDYLESSCRLSEPDALKLTIGIAEGLYHLHRNNIIHLDMKTPNILRR
TDGTPVIIDLGLSAVVEKGDNPRSGGSRGGQIRGSMTIRGSASTIRETYR
MQKTRGGKGSLLWMAPEMIAESEWSDRTDVYAFGIIMWEVFSGKQPFIYD
LPDSTTVDSLKVKIATGFRPHLKHVSHIDKKLTRIISMCWHRDPKQRPTM
MRVLDMLRRTDPKALFESFDHDDSGTLEYSEFVKFLEKYAAHVRDPHKIS
ALFKAIDLDSSGSICFEEFEAFWSSVQTHGLAAYISNQGARKVQAVREKR
PRRSDDCRIQ*

mRNA from alignment at tig00000189_pilon:89687..91669-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3354.t1 ID=Ggra3354.t1|Name=Ggra3354.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1983bp|location=Sequence derived from alignment at tig00000189_pilon:89687..91669- (Gracilaria gracilis GNS1m male)
ATGAATAACGACGAAAGGGCTGCTGTTCAAAACGAACAAAACTTCTTTGC
CGGAGCTATAAGCTTCCAGAAACCTTCAACAAACTGCATTACAGCCGTTC
GTCTACGATTCGATAGCGATGGTGATCTTTTCTTCGACTTCGCTACAGTT
GGCAGCGGCCTCTACACAGTCTGCGTCGTTCTCAAGGATAAAAACAACCT
AGAATGGAAAGAATGCCAAGCGTTATCTGCAGTTATGCAAATGTCTCAGC
GTGGAACAGAAATGAACCCCGTCATCTTTGGCAATTGTCTCAAAACAATC
GCAAGCAATCTAGGTAGAGTGGATGGTCCAACGACTCTGCAAGGTTTCTC
CATCGCTACAGTTATTCCTGGGACTTCATCTATGCGCGTCACAGATCCGG
ACACAATCATATCCACTGGTTTGGAATTTGACAATGACGGGGATATTCTC
ATGATATCTCGAACAAAACGTGGGTCGGTATATGTCATCTGCATCCGACT
GCATCTGAACAATATGGCACTAACCGTACTAGAAGGGGATGCGTTTTCGG
GATCCCTACAATTGCTGGAAACAGGAGATGTGTTGTCCCCCGATAAATTC
CTCGCTATGGCTGTGGCATTGAAGAAAATGTTTAACAACCTTACTGTTTC
AACGAAAAATGGGCAGTACATTATTTCTATGCTTCCTACTCCTGTTCAAA
ACAATACGCCACTTCCAAGTATTGTTTTTGAGGCGGCCCAAAGAGTGTTG
CCGTCTTTGCAGACCGGACCAGGTCCTGCTGCAAGTTCAACGACGAGTGT
TGGTCCTTACAAAGATATACGTGTAATGAGGCCTCTTAAACAAAGCGGTC
AAGCTCAAGTGTATGAAGGAATGAAGGGGTCCACAAAGATTGCGCTCAAG
GTGTACCAGGATCTGGCAAATCAGCCCGATGATTCCTTCAAAACTGAAGT
AAAGATGCTCCTCAAGATGTCCTACCACAATAATGTGGTAACTGTTCTGG
ACTTCTTTGAAAAGCCCAAACCAGCAATCGCTATGGAGTTCGTCGATGGC
CAAGACCTTTGGGATTACTTAGAAAGCAGCTGTCGGCTAAGCGAACCAGA
TGCACTGAAGCTTACGATTGGTATTGCAGAAGGTTTATATCATTTACATC
GGAACAACATCATTCACCTCGATATGAAAACCCCTAACATTTTGAGACGG
ACAGACGGTACTCCCGTCATAATAGATCTCGGCCTAAGTGCAGTAGTTGA
AAAGGGTGACAATCCTCGCTCGGGCGGCAGTAGGGGAGGTCAAATCAGAG
GAAGCATGACTATTCGCGGTTCAGCTTCAACCATTCGCGAAACCTATAGA
ATGCAGAAAACACGTGGAGGAAAAGGAAGTCTCCTCTGGATGGCACCGGA
AATGATTGCTGAAAGTGAATGGAGTGATCGAACTGATGTGTACGCGTTTG
GAATTATCATGTGGGAAGTTTTCTCTGGAAAGCAGCCTTTCATCTATGAC
CTGCCAGACAGCACTACGGTGGACTCGCTGAAAGTGAAGATTGCAACTGG
TTTTCGGCCGCACCTGAAACATGTTTCGCACATAGACAAGAAGCTGACGA
GAATCATTTCGATGTGCTGGCACAGGGATCCAAAACAACGTCCGACGATG
ATGCGTGTGCTGGACATGCTTCGAAGGACGGACCCAAAGGCTCTATTTGA
GAGCTTCGACCATGACGATAGCGGAACTCTTGAATACTCAGAGTTCGTGA
AATTCTTGGAGAAATATGCGGCTCATGTTCGGGACCCACACAAAATTTCA
GCACTGTTCAAAGCAATCGATTTGGATAGTTCAGGGAGTATATGCTTCGA
GGAATTCGAAGCGTTTTGGTCGTCAGTTCAGACTCACGGTCTCGCGGCGT
ACATTTCGAATCAAGGAGCGAGAAAGGTGCAGGCTGTCAGAGAAAAAAGG
CCAAGGCGTTCCGATGACTGCAGAATACAATAA

Coding sequence (CDS) from alignment at tig00000189_pilon:89687..91669-

>Ggra3354.t1 ID=Ggra3354.t1|Name=Ggra3354.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1983bp|location=Sequence derived from alignment at tig00000189_pilon:89687..91669- (Gracilaria gracilis GNS1m male)
ATGAATAACGACGAAAGGGCTGCTGTTCAAAACGAACAAAACTTCTTTGC
CGGAGCTATAAGCTTCCAGAAACCTTCAACAAACTGCATTACAGCCGTTC
GTCTACGATTCGATAGCGATGGTGATCTTTTCTTCGACTTCGCTACAGTT
GGCAGCGGCCTCTACACAGTCTGCGTCGTTCTCAAGGATAAAAACAACCT
AGAATGGAAAGAATGCCAAGCGTTATCTGCAGTTATGCAAATGTCTCAGC
GTGGAACAGAAATGAACCCCGTCATCTTTGGCAATTGTCTCAAAACAATC
GCAAGCAATCTAGGTAGAGTGGATGGTCCAACGACTCTGCAAGGTTTCTC
CATCGCTACAGTTATTCCTGGGACTTCATCTATGCGCGTCACAGATCCGG
ACACAATCATATCCACTGGTTTGGAATTTGACAATGACGGGGATATTCTC
ATGATATCTCGAACAAAACGTGGGTCGGTATATGTCATCTGCATCCGACT
GCATCTGAACAATATGGCACTAACCGTACTAGAAGGGGATGCGTTTTCGG
GATCCCTACAATTGCTGGAAACAGGAGATGTGTTGTCCCCCGATAAATTC
CTCGCTATGGCTGTGGCATTGAAGAAAATGTTTAACAACCTTACTGTTTC
AACGAAAAATGGGCAGTACATTATTTCTATGCTTCCTACTCCTGTTCAAA
ACAATACGCCACTTCCAAGTATTGTTTTTGAGGCGGCCCAAAGAGTGTTG
CCGTCTTTGCAGACCGGACCAGGTCCTGCTGCAAGTTCAACGACGAGTGT
TGGTCCTTACAAAGATATACGTGTAATGAGGCCTCTTAAACAAAGCGGTC
AAGCTCAAGTGTATGAAGGAATGAAGGGGTCCACAAAGATTGCGCTCAAG
GTGTACCAGGATCTGGCAAATCAGCCCGATGATTCCTTCAAAACTGAAGT
AAAGATGCTCCTCAAGATGTCCTACCACAATAATGTGGTAACTGTTCTGG
ACTTCTTTGAAAAGCCCAAACCAGCAATCGCTATGGAGTTCGTCGATGGC
CAAGACCTTTGGGATTACTTAGAAAGCAGCTGTCGGCTAAGCGAACCAGA
TGCACTGAAGCTTACGATTGGTATTGCAGAAGGTTTATATCATTTACATC
GGAACAACATCATTCACCTCGATATGAAAACCCCTAACATTTTGAGACGG
ACAGACGGTACTCCCGTCATAATAGATCTCGGCCTAAGTGCAGTAGTTGA
AAAGGGTGACAATCCTCGCTCGGGCGGCAGTAGGGGAGGTCAAATCAGAG
GAAGCATGACTATTCGCGGTTCAGCTTCAACCATTCGCGAAACCTATAGA
ATGCAGAAAACACGTGGAGGAAAAGGAAGTCTCCTCTGGATGGCACCGGA
AATGATTGCTGAAAGTGAATGGAGTGATCGAACTGATGTGTACGCGTTTG
GAATTATCATGTGGGAAGTTTTCTCTGGAAAGCAGCCTTTCATCTATGAC
CTGCCAGACAGCACTACGGTGGACTCGCTGAAAGTGAAGATTGCAACTGG
TTTTCGGCCGCACCTGAAACATGTTTCGCACATAGACAAGAAGCTGACGA
GAATCATTTCGATGTGCTGGCACAGGGATCCAAAACAACGTCCGACGATG
ATGCGTGTGCTGGACATGCTTCGAAGGACGGACCCAAAGGCTCTATTTGA
GAGCTTCGACCATGACGATAGCGGAACTCTTGAATACTCAGAGTTCGTGA
AATTCTTGGAGAAATATGCGGCTCATGTTCGGGACCCACACAAAATTTCA
GCACTGTTCAAAGCAATCGATTTGGATAGTTCAGGGAGTATATGCTTCGA
GGAATTCGAAGCGTTTTGGTCGTCAGTTCAGACTCACGGTCTCGCGGCGT
ACATTTCGAATCAAGGAGCGAGAAAGGTGCAGGCTGTCAGAGAAAAAAGG
CCAAGGCGTTCCGATGACTGCAGAATACAATAA