Ggra11145.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra11145.t1
Unique NameGgra11145.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length413
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000180_piloncontigtig00000180_pilon:191688..193815 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11145Ggra11145Gracilaria gracilis GNS1m malegenetig00000180_pilon 191688..193815 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11145.t1Ggra11145.t1Gracilaria gracilis GNS1m malepolypeptidetig00000180_pilon 191688..193815 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11145.t1.start1Ggra11145.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000180_pilon 191688..191690 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11145.t1.CDS1Ggra11145.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000180_pilon 191688..192407 +
Ggra11145.t1.CDS2Ggra11145.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000180_pilon 193297..193815 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11145.t1.exon1Ggra11145.t1.exon1Gracilaria gracilis GNS1m maleexontig00000180_pilon 191688..192407 +
Ggra11145.t1.exon2Ggra11145.t1.exon2Gracilaria gracilis GNS1m maleexontig00000180_pilon 193297..193815 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11145.t1.intron1Ggra11145.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000180_pilon 192408..193296 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11145.t1.stop1Ggra11145.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000180_pilon 193813..193815 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra11145.t1 ID=Ggra11145.t1|Name=Ggra11145.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=413bp
MAALPPTLPHTPPRTPVRSVPAPDENDVQLRWQRYMEVLERVSPDFLTSE
DARLSRNSETWRSRLLYEGLEVSRSNCFALRNLYFVYYRAKNGTQSDEEF
QRLRFTVSQFLRLAASHAVYAKHELYRTEALFRCVRNMDLVKLYTEFHLE
CRSPRTLLRKATHLQHICRVALEFMINEREMSDLRHVEQYLGTILGAHRG
VSKPKLSQRFVEGMDLSTLRNCVQRIRAVLHEAMDWYSKHCPPKGFAALW
FDGYKGGSEQSFIPGRTKARPVLVVIKMDIAGRAHKKRSLHEAGIGFRFE
RKRTEGDGSRKEGWGDTVAVAEAGIGFRFERKRTEGDGSRKEGWGDTVAV
AEAAEAVVEAAVEDVVEDVVEDVVEDVVEAMVETMAEGQNVGNTDIEELC
EVFARLSLRDAP*
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spliced messenger RNA

>Ggra11145.t1 ID=Ggra11145.t1|Name=Ggra11145.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1239bp|location=Sequence derived from alignment at tig00000180_pilon:191688..193815+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCCTTGCCACCGACTCTTCCTCATACTCCACCGCGGACGCCTGT
CAGAAGCGTTCCAGCTCCTGACGAAAACGATGTGCAACTGAGGTGGCAGC
GGTATATGGAGGTATTGGAAAGAGTCTCCCCAGATTTCCTTACCAGTGAG
GACGCAAGGCTCTCCCGTAATTCGGAAACATGGAGGAGCCGCCTGTTGTA
CGAGGGCCTCGAAGTCAGTAGGAGCAACTGCTTTGCTCTTCGCAATCTGT
ACTTCGTTTACTATAGGGCGAAGAATGGTACACAATCAGATGAAGAGTTT
CAACGTCTTCGTTTCACTGTTTCGCAGTTTCTAAGGTTGGCTGCATCACA
TGCGGTCTACGCAAAACATGAGCTTTACAGAACAGAGGCTCTATTCCGCT
GCGTTCGCAACATGGATCTAGTGAAGCTCTACACTGAGTTCCACCTGGAA
TGTCGATCTCCTCGCACGTTGCTACGCAAAGCAACACATTTGCAGCATAT
TTGCCGTGTGGCGCTTGAATTTATGATAAACGAGCGTGAGATGTCCGATC
TACGTCACGTCGAGCAGTATCTTGGTACTATTCTCGGAGCCCATCGGGGC
GTATCGAAGCCAAAGCTGTCACAGAGGTTTGTCGAGGGCATGGATTTGAG
CACGCTTAGAAATTGCGTGCAACGTATAAGAGCCGTATTGCATGAGGCAA
TGGACTGGTATTCGAAGCATTGCCCTCCTAAAGGTTTTGCCGCGCTTTGG
TTCGACGGGTATAAAGGAGGATCCGAACAATCCTTTATCCCAGGTCGAAC
CAAAGCGCGGCCGGTGCTTGTCGTAATCAAGATGGACATAGCCGGAAGAG
CTCATAAAAAACGATCTTTGCATGAGGCCGGGATCGGTTTCAGGTTCGAG
AGGAAAAGGACGGAAGGGGACGGATCTCGTAAGGAGGGATGGGGAGACAC
GGTGGCTGTGGCTGAGGCCGGGATCGGTTTCAGGTTCGAGAGGAAAAGGA
CGGAAGGGGACGGATCTCGTAAGGAGGGATGGGGAGACACGGTGGCTGTG
GCTGAGGCcgcggaggctgtggtggaggctgcggtggaggatgtggtgga
ggatgtggtggaggatgtggtggaggatgtggtggaggctatggtggaga
ctatggcggaaggacagaacgtgggcaacaccgaTATTGAGGAGCTCTGC
GAGGTGTTCGCCAGACTCTCTCTACGTGATGCACCTTAG
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protein sequence of Ggra11145.t1

>Ggra11145.t1 ID=Ggra11145.t1|Name=Ggra11145.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=413bp
MAALPPTLPHTPPRTPVRSVPAPDENDVQLRWQRYMEVLERVSPDFLTSE
DARLSRNSETWRSRLLYEGLEVSRSNCFALRNLYFVYYRAKNGTQSDEEF
QRLRFTVSQFLRLAASHAVYAKHELYRTEALFRCVRNMDLVKLYTEFHLE
CRSPRTLLRKATHLQHICRVALEFMINEREMSDLRHVEQYLGTILGAHRG
VSKPKLSQRFVEGMDLSTLRNCVQRIRAVLHEAMDWYSKHCPPKGFAALW
FDGYKGGSEQSFIPGRTKARPVLVVIKMDIAGRAHKKRSLHEAGIGFRFE
RKRTEGDGSRKEGWGDTVAVAEAGIGFRFERKRTEGDGSRKEGWGDTVAV
AEAAEAVVEAAVEDVVEDVVEDVVEDVVEAMVETMAEGQNVGNTDIEELC
EVFARLSLRDAP*
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mRNA from alignment at tig00000180_pilon:191688..193815+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra11145.t1 ID=Ggra11145.t1|Name=Ggra11145.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2128bp|location=Sequence derived from alignment at tig00000180_pilon:191688..193815+ (Gracilaria gracilis GNS1m male)
ATGGCCGCCTTGCCACCGACTCTTCCTCATACTCCACCGCGGACGCCTGT
CAGAAGCGTTCCAGCTCCTGACGAAAACGATGTGCAACTGAGGTGGCAGC
GGTATATGGAGGTATTGGAAAGAGTCTCCCCAGATTTCCTTACCAGTGAG
GACGCAAGGCTCTCCCGTAATTCGGAAACATGGAGGAGCCGCCTGTTGTA
CGAGGGCCTCGAAGTCAGTAGGAGCAACTGCTTTGCTCTTCGCAATCTGT
ACTTCGTTTACTATAGGGCGAAGAATGGTACACAATCAGATGAAGAGTTT
CAACGTCTTCGTTTCACTGTTTCGCAGTTTCTAAGGTTGGCTGCATCACA
TGCGGTCTACGCAAAACATGAGCTTTACAGAACAGAGGCTCTATTCCGCT
GCGTTCGCAACATGGATCTAGTGAAGCTCTACACTGAGTTCCACCTGGAA
TGTCGATCTCCTCGCACGTTGCTACGCAAAGCAACACATTTGCAGCATAT
TTGCCGTGTGGCGCTTGAATTTATGATAAACGAGCGTGAGATGTCCGATC
TACGTCACGTCGAGCAGTATCTTGGTACTATTCTCGGAGCCCATCGGGGC
GTATCGAAGCCAAAGCTGTCACAGAGGTTTGTCGAGGGCATGGATTTGAG
CACGCTTAGAAATTGCGTGCAACGTATAAGAGCCGTATTGCATGAGGCAA
TGGACTGGTATTCGAAGCATGTTAGGGATGTGCAGACTGGAACAGTGCTG
TCGAAGGCTCAGTATATGTTCTTGGCAAGCcgatggacaccggcttttgt
ctcgcttttggtgttcggcagcggtggacagagcccgcaggccctggcgc
aaattcaagtgcctgcgagtgtgaatgcatttgaagagcaacttcagcgg
gcattgggaattggattcgtatgcctcccaactttgagagggtggaggac
atcactggttggtgtgccggcggtcgtcttgccaaatttgtgcatacctt
tcctccgattccacatgtcggtgatgcggccgtgtcacaaacaagataac
ccgcggaacaactcgagatacctactgttgagttcaagaaacggtcgtcc
catgaagtctggggagctgtactatcaattcaagaagttcatgaggcagc
tgggacctccgtacgtgggtatttcaagcagaagcttaaggataaactgc
atgaacacttttatcgcagggtttcgtggaggaagactttccagtcactt
gactgagccgcagtttgttgatggcgtcgcccgctattacaacacctctg
accagcaagtgcgacgcaacgtatgttccaaaggctcagcagaacatgca
tcaactgcgaaggagctCGCTAAGTTTCTAAATGGAATATCTCGCAAAGC
CCGTCACACAAACTAATAAAGAGTTGCTTCACTGTCGACGATGCAAAGTT
TGCAGCAAACATCACGCGTGCTAGGTATTAAGGTAAGCACTCATCGTACG
TCATAGAGAGCGGCATGCACCAGCGTGACCACAAGACGTTGTGATCCTGT
ATTCGATGGTGCCGTTTAATCAGAAAAGTCCGCGCATTGTACACACACTG
TCATTACAGTGCCCTCCTAAAGGTTTTGCCGCGCTTTGGTTCGACGGGTA
TAAAGGAGGATCCGAACAATCCTTTATCCCAGGTCGAACCAAAGCGCGGC
CGGTGCTTGTCGTAATCAAGATGGACATAGCCGGAAGAGCTCATAAAAAA
CGATCTTTGCATGAGGCCGGGATCGGTTTCAGGTTCGAGAGGAAAAGGAC
GGAAGGGGACGGATCTCGTAAGGAGGGATGGGGAGACACGGTGGCTGTGG
CTGAGGCCGGGATCGGTTTCAGGTTCGAGAGGAAAAGGACGGAAGGGGAC
GGATCTCGTAAGGAGGGATGGGGAGACACGGTGGCTGTGGCTGAGGCcgc
ggaggctgtggtggaggctgcggtggaggatgtggtggaggatgtggtgg
aggatgtggtggaggatgtggtggaggctatggtggagactatggcggaa
ggacagaacgtgggcaacaccgaTATTGAGGAGCTCTGCGAGGTGTTCGC
CAGACTCTCTCTACGTGATGCACCTTAG
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Coding sequence (CDS) from alignment at tig00000180_pilon:191688..193815+

>Ggra11145.t1 ID=Ggra11145.t1|Name=Ggra11145.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1239bp|location=Sequence derived from alignment at tig00000180_pilon:191688..193815+ (Gracilaria gracilis GNS1m male)
ATGGCCGCCTTGCCACCGACTCTTCCTCATACTCCACCGCGGACGCCTGT
CAGAAGCGTTCCAGCTCCTGACGAAAACGATGTGCAACTGAGGTGGCAGC
GGTATATGGAGGTATTGGAAAGAGTCTCCCCAGATTTCCTTACCAGTGAG
GACGCAAGGCTCTCCCGTAATTCGGAAACATGGAGGAGCCGCCTGTTGTA
CGAGGGCCTCGAAGTCAGTAGGAGCAACTGCTTTGCTCTTCGCAATCTGT
ACTTCGTTTACTATAGGGCGAAGAATGGTACACAATCAGATGAAGAGTTT
CAACGTCTTCGTTTCACTGTTTCGCAGTTTCTAAGGTTGGCTGCATCACA
TGCGGTCTACGCAAAACATGAGCTTTACAGAACAGAGGCTCTATTCCGCT
GCGTTCGCAACATGGATCTAGTGAAGCTCTACACTGAGTTCCACCTGGAA
TGTCGATCTCCTCGCACGTTGCTACGCAAAGCAACACATTTGCAGCATAT
TTGCCGTGTGGCGCTTGAATTTATGATAAACGAGCGTGAGATGTCCGATC
TACGTCACGTCGAGCAGTATCTTGGTACTATTCTCGGAGCCCATCGGGGC
GTATCGAAGCCAAAGCTGTCACAGAGGTTTGTCGAGGGCATGGATTTGAG
CACGCTTAGAAATTGCGTGCAACGTATAAGAGCCGTATTGCATGAGGCAA
TGGACTGGTATTCGAAGCATTGCCCTCCTAAAGGTTTTGCCGCGCTTTGG
TTCGACGGGTATAAAGGAGGATCCGAACAATCCTTTATCCCAGGTCGAAC
CAAAGCGCGGCCGGTGCTTGTCGTAATCAAGATGGACATAGCCGGAAGAG
CTCATAAAAAACGATCTTTGCATGAGGCCGGGATCGGTTTCAGGTTCGAG
AGGAAAAGGACGGAAGGGGACGGATCTCGTAAGGAGGGATGGGGAGACAC
GGTGGCTGTGGCTGAGGCCGGGATCGGTTTCAGGTTCGAGAGGAAAAGGA
CGGAAGGGGACGGATCTCGTAAGGAGGGATGGGGAGACACGGTGGCTGTG
GCTGAGGCcgcggaggctgtggtggaggctgcggtggaggatgtggtgga
ggatgtggtggaggatgtggtggaggatgtggtggaggctatggtggaga
ctatggcggaaggacagaacgtgggcaacaccgaTATTGAGGAGCTCTGC
GAGGTGTTCGCCAGACTCTCTCTACGTGATGCACCTTAG
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