Ggra2539.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2539.t1
Unique NameGgra2539.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length407
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:655673..656893 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMF118CT
PFAMsPH,Pkinase
Max annot lvl2759|Eukaryota
KEGG koko:K04456,ko:K13303
KEGG Pathwayko01521,ko01522,ko01524,ko04010,ko04012,ko04014,ko04015,ko04022,ko04024,ko04062,ko04066,ko04068,ko04071,ko04072,ko04140,ko04150,ko04151,ko04152,ko04210,ko04211,ko04212,ko04213,ko04218,ko04261,ko04370,ko04371,ko04380,ko04510,ko04550,ko04611,ko04620,ko04630,ko04660,ko04662,ko04664,ko04666,ko04668,ko04722,ko04725,ko04728,ko04910,ko04914,ko04915,ko04917,ko04919,ko04920,ko04922,ko04923,ko04926,ko04931,ko04932,ko04933,ko04973,ko05142,ko05145,ko05152,ko05160,ko05161,ko05162,ko05164,ko05165,ko05166,ko05167,ko05169,ko05200,ko05205,ko05210,ko05211,ko05212,ko05213,ko05214,ko05215,ko05218,ko05220,ko05221,ko05222,ko05223,ko05224,ko05225,ko05226,ko05230,ko05231,ko05418,map01521,map01522,map01524,map04010,map04012,map04014,map04015,map04022,map04024,map04062,map04066,map04068,map04071,map04072,map04140,map04150,map04151,map04152,map04210,map04211,map04212,map04213,map04218,map04261,map04370,map04371,map04380,map04510,map04550,map04611,map04620,map04630,map04660,map04662,map04664,map04666,map04668,map04722,map04725,map04728,map04910,map04914,map04915,map04917,map04919,map04920,map04922,map04923,map04926,map04931,map04932,map04933,map04973,map05142,map05145,map05152,map05160,map05161,map05162,map05164,map05165,map05166,map05167,map05169,map05200,map05205,map05210,map05211,map05212,map05213,map05214,map05215,map05218,map05220,map05221,map05222,map05223,map05224,map05225,map05226,map05230,map05231,map05418
KEGG ModuleM00676
Evalue3.81e-83
EggNOG OGsCOG0515@1|root,KOG0690@2759|Eukaryota
EC2.7.11.1
Descriptionglycogen cell differentiation involved in embryonic placenta development
COG categoryKLT
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2539Ggra2539Gracilaria gracilis GNS1m malegenetig00000005_pilon 655673..656893 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2539.t1.start1Ggra2539.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 655673..655675 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2539.t1.CDS1Ggra2539.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 655673..656893 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2539.t1.exon1Ggra2539.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 655673..656893 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2539.t1.stop1Ggra2539.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 656891..656893 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2539.t1Ggra2539.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 655673..656893 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2539.t1 ID=Ggra2539.t1|Name=Ggra2539.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=407bp
MGSCFSTSSAPREPSNHPTRWKVTTSNLLPSCEPIRLLGEGTFGTVVLVR
ERSTQQLFAVKVMNKSQLVNEAQLDNIVTERQVLREAGPHPFVVECHSGF
QTPHAVVLVLEYVSGGDMYDLLRTHGCLTEAQARFYLAEITVAVAELHSH
DFFFRDLKLENILIDENGHVRLTDFGLAGKFQSGDPSEKAIYDISGTAIY
QAPEMIKGEGHGRVVDWWALGVLAYVLMAGRPPFSSDSREELTRKITEEA
LDLDNDERLTEVSETCKDFIKCLLDKNPATRLGHAGADAQDIQQHPFFAG
IDWAGVENFKLDPPLRPALQRPTEPNNAQEIKQAHKSLADKIMRKHKGDG
GMLDEGEYKPIQVNKFPTSNRVSIGLDFSGRNKKQRSKTWTGTLDDFGRE
ISPAQQ*
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spliced messenger RNA

>Ggra2539.t1 ID=Ggra2539.t1|Name=Ggra2539.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1221bp|location=Sequence derived from alignment at tig00000005_pilon:655673..656893+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCTCTTGTTTCTCCACGTCGTCCGCCCCACGTGAGCCCTCTAATCA
TCCCACTCGCTGGAAAGTTACCACTTCTAATCTCTTGCCGTCATGTGAGC
CCATCCGTCTGCTCGGTGAAGGCACATTTGGCACTGTCGTGCTCGTCCGA
GAGCGCAGCACGCAACAACTCTTCGCCGTAAAGGTCATGAACAAGTCCCA
GCTCGTGAACGAAGCCCAGCTGGACAATATCGTCACCGAGCGCCAAGTGT
TGCGAGAGGCAGGGCCTCACCCGTTTGTTGTCGAATGCCATTCTGGCTTT
CAAACCCCACACGCCGTTGTCCTCGTCCTGGAGTACGTAAGTGGCGGCGA
TATGTACGATCTGCTTAGAACGCATGGCTGCCTTACTGAAGCCCAAGCCC
GTTTCTATCTCGCCGAGATCACCGTAGCTGTCGCGGAACTACACAGTCAT
GATTTCTTTTTCAGAGATCTCAAGCTTGAGAACATTCTCATCGACGAGAA
CGGCCACGTGCGCCTCACCGACTTTGGTCTGGCGGGCAAATTCCAGTCTG
GAGACCCCAGTGAGAAGGCCATCTACGATATTTCCGGAACTGCCATATAT
CAAGCGCCGGAAATGATTAAAGGCGAAGGTCATGGCCGCGTTGTCGATTG
GTGGGCTCTTGGGGTGCTGGCGTACGTGTTAATGGCGGGTCGACCTCCTT
TCTCGAGCGACTCGCGTGAAGAACTGACGAGAAAGATAACGGAAGAAGCC
CTGGACCTTGATAACGACGAGCGACTGACTGAAGTTTCAGAAACATGCAA
AGACTTCATAAAGTGTTTATTAGATAAGAATCCGGCCACAAGACTTGGTC
ATGCAGGCGCCGACGCACAGGACATACAACAACATCCCTTCTTTGCTGGT
ATCGACTGGGCCGGCGTCGAAAACTTCAAACTGGATCCTCCGTTAAGGCC
TGCGCTTCAACGTCCAACTGAACCGAATAACGCACAGGAAATCAAGCAAG
CTCACAAGAGTTTGGCTGATAAGATTATGAGAAAGCATAAAGGTGATGGC
GGAATGCTTGATGAGGGCGAGTATAAACCGATTCAGGTGAACAAGTTCCC
GACCTCGAATCGGGTCAGTATTGGGCTGGACTTCTCGGGTCGAAACAAGA
AGCAGCGAAGTAAGACGTGGACCGGCACCCTCGACGACTTTGGGAGGGAG
ATATCCCCTGCTCAGCAGTGA
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protein sequence of Ggra2539.t1

>Ggra2539.t1 ID=Ggra2539.t1|Name=Ggra2539.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=407bp
MGSCFSTSSAPREPSNHPTRWKVTTSNLLPSCEPIRLLGEGTFGTVVLVR
ERSTQQLFAVKVMNKSQLVNEAQLDNIVTERQVLREAGPHPFVVECHSGF
QTPHAVVLVLEYVSGGDMYDLLRTHGCLTEAQARFYLAEITVAVAELHSH
DFFFRDLKLENILIDENGHVRLTDFGLAGKFQSGDPSEKAIYDISGTAIY
QAPEMIKGEGHGRVVDWWALGVLAYVLMAGRPPFSSDSREELTRKITEEA
LDLDNDERLTEVSETCKDFIKCLLDKNPATRLGHAGADAQDIQQHPFFAG
IDWAGVENFKLDPPLRPALQRPTEPNNAQEIKQAHKSLADKIMRKHKGDG
GMLDEGEYKPIQVNKFPTSNRVSIGLDFSGRNKKQRSKTWTGTLDDFGRE
ISPAQQ*
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mRNA from alignment at tig00000005_pilon:655673..656893+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2539.t1 ID=Ggra2539.t1|Name=Ggra2539.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1221bp|location=Sequence derived from alignment at tig00000005_pilon:655673..656893+ (Gracilaria gracilis GNS1m male)
ATGGGCTCTTGTTTCTCCACGTCGTCCGCCCCACGTGAGCCCTCTAATCA
TCCCACTCGCTGGAAAGTTACCACTTCTAATCTCTTGCCGTCATGTGAGC
CCATCCGTCTGCTCGGTGAAGGCACATTTGGCACTGTCGTGCTCGTCCGA
GAGCGCAGCACGCAACAACTCTTCGCCGTAAAGGTCATGAACAAGTCCCA
GCTCGTGAACGAAGCCCAGCTGGACAATATCGTCACCGAGCGCCAAGTGT
TGCGAGAGGCAGGGCCTCACCCGTTTGTTGTCGAATGCCATTCTGGCTTT
CAAACCCCACACGCCGTTGTCCTCGTCCTGGAGTACGTAAGTGGCGGCGA
TATGTACGATCTGCTTAGAACGCATGGCTGCCTTACTGAAGCCCAAGCCC
GTTTCTATCTCGCCGAGATCACCGTAGCTGTCGCGGAACTACACAGTCAT
GATTTCTTTTTCAGAGATCTCAAGCTTGAGAACATTCTCATCGACGAGAA
CGGCCACGTGCGCCTCACCGACTTTGGTCTGGCGGGCAAATTCCAGTCTG
GAGACCCCAGTGAGAAGGCCATCTACGATATTTCCGGAACTGCCATATAT
CAAGCGCCGGAAATGATTAAAGGCGAAGGTCATGGCCGCGTTGTCGATTG
GTGGGCTCTTGGGGTGCTGGCGTACGTGTTAATGGCGGGTCGACCTCCTT
TCTCGAGCGACTCGCGTGAAGAACTGACGAGAAAGATAACGGAAGAAGCC
CTGGACCTTGATAACGACGAGCGACTGACTGAAGTTTCAGAAACATGCAA
AGACTTCATAAAGTGTTTATTAGATAAGAATCCGGCCACAAGACTTGGTC
ATGCAGGCGCCGACGCACAGGACATACAACAACATCCCTTCTTTGCTGGT
ATCGACTGGGCCGGCGTCGAAAACTTCAAACTGGATCCTCCGTTAAGGCC
TGCGCTTCAACGTCCAACTGAACCGAATAACGCACAGGAAATCAAGCAAG
CTCACAAGAGTTTGGCTGATAAGATTATGAGAAAGCATAAAGGTGATGGC
GGAATGCTTGATGAGGGCGAGTATAAACCGATTCAGGTGAACAAGTTCCC
GACCTCGAATCGGGTCAGTATTGGGCTGGACTTCTCGGGTCGAAACAAGA
AGCAGCGAAGTAAGACGTGGACCGGCACCCTCGACGACTTTGGGAGGGAG
ATATCCCCTGCTCAGCAGTGA
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Coding sequence (CDS) from alignment at tig00000005_pilon:655673..656893+

>Ggra2539.t1 ID=Ggra2539.t1|Name=Ggra2539.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1221bp|location=Sequence derived from alignment at tig00000005_pilon:655673..656893+ (Gracilaria gracilis GNS1m male)
ATGGGCTCTTGTTTCTCCACGTCGTCCGCCCCACGTGAGCCCTCTAATCA
TCCCACTCGCTGGAAAGTTACCACTTCTAATCTCTTGCCGTCATGTGAGC
CCATCCGTCTGCTCGGTGAAGGCACATTTGGCACTGTCGTGCTCGTCCGA
GAGCGCAGCACGCAACAACTCTTCGCCGTAAAGGTCATGAACAAGTCCCA
GCTCGTGAACGAAGCCCAGCTGGACAATATCGTCACCGAGCGCCAAGTGT
TGCGAGAGGCAGGGCCTCACCCGTTTGTTGTCGAATGCCATTCTGGCTTT
CAAACCCCACACGCCGTTGTCCTCGTCCTGGAGTACGTAAGTGGCGGCGA
TATGTACGATCTGCTTAGAACGCATGGCTGCCTTACTGAAGCCCAAGCCC
GTTTCTATCTCGCCGAGATCACCGTAGCTGTCGCGGAACTACACAGTCAT
GATTTCTTTTTCAGAGATCTCAAGCTTGAGAACATTCTCATCGACGAGAA
CGGCCACGTGCGCCTCACCGACTTTGGTCTGGCGGGCAAATTCCAGTCTG
GAGACCCCAGTGAGAAGGCCATCTACGATATTTCCGGAACTGCCATATAT
CAAGCGCCGGAAATGATTAAAGGCGAAGGTCATGGCCGCGTTGTCGATTG
GTGGGCTCTTGGGGTGCTGGCGTACGTGTTAATGGCGGGTCGACCTCCTT
TCTCGAGCGACTCGCGTGAAGAACTGACGAGAAAGATAACGGAAGAAGCC
CTGGACCTTGATAACGACGAGCGACTGACTGAAGTTTCAGAAACATGCAA
AGACTTCATAAAGTGTTTATTAGATAAGAATCCGGCCACAAGACTTGGTC
ATGCAGGCGCCGACGCACAGGACATACAACAACATCCCTTCTTTGCTGGT
ATCGACTGGGCCGGCGTCGAAAACTTCAAACTGGATCCTCCGTTAAGGCC
TGCGCTTCAACGTCCAACTGAACCGAATAACGCACAGGAAATCAAGCAAG
CTCACAAGAGTTTGGCTGATAAGATTATGAGAAAGCATAAAGGTGATGGC
GGAATGCTTGATGAGGGCGAGTATAAACCGATTCAGGTGAACAAGTTCCC
GACCTCGAATCGGGTCAGTATTGGGCTGGACTTCTCGGGTCGAAACAAGA
AGCAGCGAAGTAAGACGTGGACCGGCACCCTCGACGACTTTGGGAGGGAG
ATATCCCCTGCTCAGCAGTGA
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