Ggra9050.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9050.t1
Unique Name	Ggra9050.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	626

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000176_pilon	contig	tig00000176_pilon:44284..46161 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	227086.JGI_V11_74920
Preferred name	NCAPH2
PFAMs	CNDH2_C,CNDH2_M,CNDH2_N
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K11490
GOs	GO:0000003,GO:0000070,GO:0000278,GO:0000280,GO:0000793,GO:0000796,GO:0000819,GO:0001775,GO:0002376,GO:0002520,GO:0002521,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0006282,GO:0006323,GO:0006996,GO:0007049,GO:0007059,GO:0007143,GO:0007275,GO:0007276,GO:0007292,GO:0008150,GO:0009893,GO:0009987,GO:0010032,GO:0010604,GO:0016043,GO:0016321,GO:0019219,GO:0019222,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0030054,GO:0030097,GO:0030098,GO:0030154,GO:0030217,GO:0030261,GO:0031323,GO:0031325,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033077,GO:0042110,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044421,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044464,GO:0044703,GO:0044815,GO:0045132,GO:0045171,GO:0045321,GO:0045739,GO:0045935,GO:0046649,GO:0048285,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048583,GO:0048584,GO:0048609,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051052,GO:0051054,GO:0051171,GO:0051173,GO:0051276,GO:0051304,GO:0051306,GO:0051307,GO:0051309,GO:0051321,GO:0051704,GO:0060255,GO:0065007,GO:0070013,GO:0070192,GO:0071103,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0098813,GO:0140013,GO:0140014,GO:1903046,GO:1903047,GO:2001020,GO:2001022
Evalue	1.1e-36
EggNOG OGs	KOG2359@1\|root,KOG2359@2759\|Eukaryota
Description	chromosome condensation
COG category	S
BRITE	ko00000,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9050	Ggra9050	Gracilaria gracilis GNS1m male	gene	tig00000176_pilon 44284..46161 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9050.t1.start1	Ggra9050.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000176_pilon 44284..44286 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9050.t1.CDS1	Ggra9050.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000176_pilon 44284..46161 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9050.t1.exon1	Ggra9050.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000176_pilon 44284..46161 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9050.t1.stop1	Ggra9050.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000176_pilon 46159..46161 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9050.t1	Ggra9050.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000176_pilon 44284..46161 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000176_pilon:44284..46161+
coding sequence from alignment at tig00000176_pilon:44284..46161+

mRNA sequence

>Ggra9050.t1 ID=Ggra9050.t1|Name=Ggra9050.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=626bp
MKHHSAEAPSFSVLLNPIRDLASNWSIDVAEELTHYAATLGINLDEASSQ
HLENDVQVDFAQAALLVQGSTSIYSRKVEHLYGLVYTAVAALGQLKAGKE
AGRGDADDDNAIEKDEFATDEVNFLTLDDCLPELDERRVTLPAKELPPPG
SLQDNTCLKPIPPMLFQHGADAAQIASAKFNLLSARLHPSGALVMRGCPP
FDENLQALPEGNHAPNVEQQNDAPNLEQDITQPTAIDFDNDDGFCTPPPL
AGPDDGEEILVAVASSAKKRRSTEGSPVDKEEVEPRKRDPFMLLDPHQKI
PELEKELRVGKTYEVPREKRTPKPYIGFFDNGMSKMELVDALLGPIPRGT
SIRSYLCFEGARDTLQDILRRRMAKKRQLMARNSPAAVIFDENREVFDDM
EEEEDLIEMGMNTVTFDVGDNEEIDMPSYPHLDDRADGMEALGNELGDLE
DGLGSDDQLRRLASSYEETCRKYLEQTRGLWEQHSVDAKLAKRVESWSLR
IQPILEEEETRPEFDIAAYGRRIVSHFQERHDKQGVNEVSMSSMFQGCDR
YDVCRNFLATLQLANSQSIEIVPPSQCSVADPMLRLICQAPPALTPVKSR
SKRLRERGGTPLTAKRAPLRQRLDV*

spliced messenger RNA

>Ggra9050.t1 ID=Ggra9050.t1|Name=Ggra9050.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1878bp|location=Sequence derived from alignment at tig00000176_pilon:44284..46161+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAACACCACTCTGCTGAAGCACCGAGTTTCAGCGTATTGCTGAATCC
AATACGTGACCTTGCTTCTAACTGGAGCATAGACGTCGCTGAAGAACTTA
CGCACTATGCTGCAACGCTAGGTATTAATCTCGATGAAGCTTCTTCACAG
CATTTGGAGAATGATGTTCAAGTCGACTTCGCACAGGCTGCATTGCTTGT
ACAAGGCTCAACTTCAATTTATTCGCGGAAAGTAGAGCACCTGTACGGTC
TTGTCTACACGGCAGTCGCCGCTTTAGGTCAACTGAAGGCCGGGAAAGAA
GCCGGTCGTGGCGATGCTGATGATGACAATGCGATTGAAAAGGATGAGTT
TGCGACTGATGAGGTGAATTTTCTTACCTTGGATGATTGTCTGCCGGAGC
TTGATGAGCGTCGAGTCACACTTCCGGCAAAAGAATTACCGCCTCCGGGT
TCTCTCCAGGACAACACCTGCTTGAAGCCAATTCCCCCAATGCTTTTCCA
GCATGGTGCAGACGCTGCGCAAATCGCTTCCGCGAAGTTCAATCTGTTGT
CGGCGCGTTTGCATCCATCTGGTGCGCTTGTCATGCGCGGTTGCCCCCCT
TTTGATGAGAATTTGCAAGCATTGCCAGAAGGCAATCATGCACCAAATGT
GGAGCAACAAAATGACGCTCCAAACTTGGAACAGGATATCACGCAGCCAA
CAGCCATAGATTTTGATAACGATGATGGATTTTGTACTCCGCCCCCACTG
GCAGGACCTGATGATGGTGAAGAGATTTTAGTAGCGGTTGCGAGCTCAGC
CAAAAAGCGGAGAAGTACTGAAGGTTCCCCGGTGGACAAAGAAGAAGTTG
AGCCTCGAAAACGAGATCCATTTATGCTCTTGGATCCACATCAGAAGATA
CCAGAGCTGGAGAAGGAGTTGAGGGTGGGAAAGACGTATGAAGTTCCAAG
AGAGAAACGAACGCCTAAGCCTTACATAGGATTTTTCGATAATGGGATGA
GCAAGATGGAATTAGTGGACGCTCTTCTCGGGCCCATACCTCGGGGCACT
TCAATAAGAAGTTATCTCTGTTTCGAAGGTGCTAGGGATACCCTCCAGGA
CATTTTGAGACGGAGAATGGCGAAGAAGAGACAGCTGATGGCGAGAAACT
CACCCGCGGCTGTCATTTTTGACGAGAATAGAGAGGTTTTCGATGATATG
GAGGAGGAGGAAGATCTCATTGAGATGGGAATGAATACAGTGACTTTTGA
TGTGGGTGACAACGAGGAGATAGATATGCCTTCATATCCACATTTGGACG
ATAGGGCTGATGGTATGGAAGCTCTTGGAAATGAACTGGGGGATTTGGAA
GATGGTCTAGGTTCCGATGATCAGCTGCGTCGATTAGCTTCCAGCTATGA
GGAAACCTGTCGAAAATACCTTGAACAAACACGCGGGCTCTGGGAGCAAC
ATTCTGTGGATGCAAAGTTGGCAAAACGAGTGGAATCGTGGTCGTTGAGA
ATACAACCCATTCTGGAAGAGGAGGAGACGCGGCCAGAATTCGACATAGC
TGCCTACGGACGGCGAATTGTTTCACATTTCCAAGAAAGACATGACAAAC
AGGGAGTGAATGAGGTATCAATGAGTTCTATGTTTCAGGGTTGCGATAGG
TACGATGTGTGTCGTAATTTCTTGGCCACACTCCAACTAGCAAACTCCCA
ATCCATCGAGATTGTCCCACCGTCTCAGTGCTCAGTGGCTGACCCAATGC
TGCGGCTAATTTGTCAGGCTCCACCCGCGTTAACACCAGTGAAATCACGG
TCCAAGCGGTTGAGGGAGCGAGGTGGGACGCCGCTTACAGCAAAACGAGC
TCCCCTCCGGCAAAGACTAGACGTTTAA

protein sequence of Ggra9050.t1

>Ggra9050.t1 ID=Ggra9050.t1|Name=Ggra9050.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=626bp
MKHHSAEAPSFSVLLNPIRDLASNWSIDVAEELTHYAATLGINLDEASSQ
HLENDVQVDFAQAALLVQGSTSIYSRKVEHLYGLVYTAVAALGQLKAGKE
AGRGDADDDNAIEKDEFATDEVNFLTLDDCLPELDERRVTLPAKELPPPG
SLQDNTCLKPIPPMLFQHGADAAQIASAKFNLLSARLHPSGALVMRGCPP
FDENLQALPEGNHAPNVEQQNDAPNLEQDITQPTAIDFDNDDGFCTPPPL
AGPDDGEEILVAVASSAKKRRSTEGSPVDKEEVEPRKRDPFMLLDPHQKI
PELEKELRVGKTYEVPREKRTPKPYIGFFDNGMSKMELVDALLGPIPRGT
SIRSYLCFEGARDTLQDILRRRMAKKRQLMARNSPAAVIFDENREVFDDM
EEEEDLIEMGMNTVTFDVGDNEEIDMPSYPHLDDRADGMEALGNELGDLE
DGLGSDDQLRRLASSYEETCRKYLEQTRGLWEQHSVDAKLAKRVESWSLR
IQPILEEEETRPEFDIAAYGRRIVSHFQERHDKQGVNEVSMSSMFQGCDR
YDVCRNFLATLQLANSQSIEIVPPSQCSVADPMLRLICQAPPALTPVKSR
SKRLRERGGTPLTAKRAPLRQRLDV*

mRNA from alignment at tig00000176_pilon:44284..46161+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9050.t1 ID=Ggra9050.t1|Name=Ggra9050.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1878bp|location=Sequence derived from alignment at tig00000176_pilon:44284..46161+ (Gracilaria gracilis GNS1m male)
ATGAAACACCACTCTGCTGAAGCACCGAGTTTCAGCGTATTGCTGAATCC
AATACGTGACCTTGCTTCTAACTGGAGCATAGACGTCGCTGAAGAACTTA
CGCACTATGCTGCAACGCTAGGTATTAATCTCGATGAAGCTTCTTCACAG
CATTTGGAGAATGATGTTCAAGTCGACTTCGCACAGGCTGCATTGCTTGT
ACAAGGCTCAACTTCAATTTATTCGCGGAAAGTAGAGCACCTGTACGGTC
TTGTCTACACGGCAGTCGCCGCTTTAGGTCAACTGAAGGCCGGGAAAGAA
GCCGGTCGTGGCGATGCTGATGATGACAATGCGATTGAAAAGGATGAGTT
TGCGACTGATGAGGTGAATTTTCTTACCTTGGATGATTGTCTGCCGGAGC
TTGATGAGCGTCGAGTCACACTTCCGGCAAAAGAATTACCGCCTCCGGGT
TCTCTCCAGGACAACACCTGCTTGAAGCCAATTCCCCCAATGCTTTTCCA
GCATGGTGCAGACGCTGCGCAAATCGCTTCCGCGAAGTTCAATCTGTTGT
CGGCGCGTTTGCATCCATCTGGTGCGCTTGTCATGCGCGGTTGCCCCCCT
TTTGATGAGAATTTGCAAGCATTGCCAGAAGGCAATCATGCACCAAATGT
GGAGCAACAAAATGACGCTCCAAACTTGGAACAGGATATCACGCAGCCAA
CAGCCATAGATTTTGATAACGATGATGGATTTTGTACTCCGCCCCCACTG
GCAGGACCTGATGATGGTGAAGAGATTTTAGTAGCGGTTGCGAGCTCAGC
CAAAAAGCGGAGAAGTACTGAAGGTTCCCCGGTGGACAAAGAAGAAGTTG
AGCCTCGAAAACGAGATCCATTTATGCTCTTGGATCCACATCAGAAGATA
CCAGAGCTGGAGAAGGAGTTGAGGGTGGGAAAGACGTATGAAGTTCCAAG
AGAGAAACGAACGCCTAAGCCTTACATAGGATTTTTCGATAATGGGATGA
GCAAGATGGAATTAGTGGACGCTCTTCTCGGGCCCATACCTCGGGGCACT
TCAATAAGAAGTTATCTCTGTTTCGAAGGTGCTAGGGATACCCTCCAGGA
CATTTTGAGACGGAGAATGGCGAAGAAGAGACAGCTGATGGCGAGAAACT
CACCCGCGGCTGTCATTTTTGACGAGAATAGAGAGGTTTTCGATGATATG
GAGGAGGAGGAAGATCTCATTGAGATGGGAATGAATACAGTGACTTTTGA
TGTGGGTGACAACGAGGAGATAGATATGCCTTCATATCCACATTTGGACG
ATAGGGCTGATGGTATGGAAGCTCTTGGAAATGAACTGGGGGATTTGGAA
GATGGTCTAGGTTCCGATGATCAGCTGCGTCGATTAGCTTCCAGCTATGA
GGAAACCTGTCGAAAATACCTTGAACAAACACGCGGGCTCTGGGAGCAAC
ATTCTGTGGATGCAAAGTTGGCAAAACGAGTGGAATCGTGGTCGTTGAGA
ATACAACCCATTCTGGAAGAGGAGGAGACGCGGCCAGAATTCGACATAGC
TGCCTACGGACGGCGAATTGTTTCACATTTCCAAGAAAGACATGACAAAC
AGGGAGTGAATGAGGTATCAATGAGTTCTATGTTTCAGGGTTGCGATAGG
TACGATGTGTGTCGTAATTTCTTGGCCACACTCCAACTAGCAAACTCCCA
ATCCATCGAGATTGTCCCACCGTCTCAGTGCTCAGTGGCTGACCCAATGC
TGCGGCTAATTTGTCAGGCTCCACCCGCGTTAACACCAGTGAAATCACGG
TCCAAGCGGTTGAGGGAGCGAGGTGGGACGCCGCTTACAGCAAAACGAGC
TCCCCTCCGGCAAAGACTAGACGTTTAA

Coding sequence (CDS) from alignment at tig00000176_pilon:44284..46161+

>Ggra9050.t1 ID=Ggra9050.t1|Name=Ggra9050.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1878bp|location=Sequence derived from alignment at tig00000176_pilon:44284..46161+ (Gracilaria gracilis GNS1m male)
ATGAAACACCACTCTGCTGAAGCACCGAGTTTCAGCGTATTGCTGAATCC
AATACGTGACCTTGCTTCTAACTGGAGCATAGACGTCGCTGAAGAACTTA
CGCACTATGCTGCAACGCTAGGTATTAATCTCGATGAAGCTTCTTCACAG
CATTTGGAGAATGATGTTCAAGTCGACTTCGCACAGGCTGCATTGCTTGT
ACAAGGCTCAACTTCAATTTATTCGCGGAAAGTAGAGCACCTGTACGGTC
TTGTCTACACGGCAGTCGCCGCTTTAGGTCAACTGAAGGCCGGGAAAGAA
GCCGGTCGTGGCGATGCTGATGATGACAATGCGATTGAAAAGGATGAGTT
TGCGACTGATGAGGTGAATTTTCTTACCTTGGATGATTGTCTGCCGGAGC
TTGATGAGCGTCGAGTCACACTTCCGGCAAAAGAATTACCGCCTCCGGGT
TCTCTCCAGGACAACACCTGCTTGAAGCCAATTCCCCCAATGCTTTTCCA
GCATGGTGCAGACGCTGCGCAAATCGCTTCCGCGAAGTTCAATCTGTTGT
CGGCGCGTTTGCATCCATCTGGTGCGCTTGTCATGCGCGGTTGCCCCCCT
TTTGATGAGAATTTGCAAGCATTGCCAGAAGGCAATCATGCACCAAATGT
GGAGCAACAAAATGACGCTCCAAACTTGGAACAGGATATCACGCAGCCAA
CAGCCATAGATTTTGATAACGATGATGGATTTTGTACTCCGCCCCCACTG
GCAGGACCTGATGATGGTGAAGAGATTTTAGTAGCGGTTGCGAGCTCAGC
CAAAAAGCGGAGAAGTACTGAAGGTTCCCCGGTGGACAAAGAAGAAGTTG
AGCCTCGAAAACGAGATCCATTTATGCTCTTGGATCCACATCAGAAGATA
CCAGAGCTGGAGAAGGAGTTGAGGGTGGGAAAGACGTATGAAGTTCCAAG
AGAGAAACGAACGCCTAAGCCTTACATAGGATTTTTCGATAATGGGATGA
GCAAGATGGAATTAGTGGACGCTCTTCTCGGGCCCATACCTCGGGGCACT
TCAATAAGAAGTTATCTCTGTTTCGAAGGTGCTAGGGATACCCTCCAGGA
CATTTTGAGACGGAGAATGGCGAAGAAGAGACAGCTGATGGCGAGAAACT
CACCCGCGGCTGTCATTTTTGACGAGAATAGAGAGGTTTTCGATGATATG
GAGGAGGAGGAAGATCTCATTGAGATGGGAATGAATACAGTGACTTTTGA
TGTGGGTGACAACGAGGAGATAGATATGCCTTCATATCCACATTTGGACG
ATAGGGCTGATGGTATGGAAGCTCTTGGAAATGAACTGGGGGATTTGGAA
GATGGTCTAGGTTCCGATGATCAGCTGCGTCGATTAGCTTCCAGCTATGA
GGAAACCTGTCGAAAATACCTTGAACAAACACGCGGGCTCTGGGAGCAAC
ATTCTGTGGATGCAAAGTTGGCAAAACGAGTGGAATCGTGGTCGTTGAGA
ATACAACCCATTCTGGAAGAGGAGGAGACGCGGCCAGAATTCGACATAGC
TGCCTACGGACGGCGAATTGTTTCACATTTCCAAGAAAGACATGACAAAC
AGGGAGTGAATGAGGTATCAATGAGTTCTATGTTTCAGGGTTGCGATAGG
TACGATGTGTGTCGTAATTTCTTGGCCACACTCCAACTAGCAAACTCCCA
ATCCATCGAGATTGTCCCACCGTCTCAGTGCTCAGTGGCTGACCCAATGC
TGCGGCTAATTTGTCAGGCTCCACCCGCGTTAACACCAGTGAAATCACGG
TCCAAGCGGTTGAGGGAGCGAGGTGGGACGCCGCTTACAGCAAAACGAGC
TCCCCTCCGGCAAAGACTAGACGTTTAA