Ggra9069.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9069.t1
Unique NameGgra9069.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length307
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000176_piloncontigtig00000176_pilon:103020..103940 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7994.ENSAMXP00000007158
Preferred nameDNAJC25
PFAMsDnaJ
Max annot lvl33208|Metazoa
KEGG koko:K19371
Evalue1.46e-35
EggNOG OGsCOG0484@1|root,KOG0722@2759|Eukaryota,38F65@33154|Opisthokonta,3B9N4@33208|Metazoa,3CVHM@33213|Bilateria,484ZE@7711|Chordata,48Z2M@7742|Vertebrata,49YGP@7898|Actinopterygii
DescriptionDnaJ (Hsp40) homolog, subfamily C , member 25
COG categoryO
BRITEko00000,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9069Ggra9069Gracilaria gracilis GNS1m malegenetig00000176_pilon 103020..103940 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9069.t1.start1Ggra9069.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000176_pilon 103020..103022 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9069.t1.CDS1Ggra9069.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000176_pilon 103020..103940 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9069.t1.exon1Ggra9069.t1.exon1Gracilaria gracilis GNS1m maleexontig00000176_pilon 103020..103940 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9069.t1.stop1Ggra9069.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000176_pilon 103938..103940 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9069.t1Ggra9069.t1Gracilaria gracilis GNS1m malepolypeptidetig00000176_pilon 103020..103940 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9069.t1 ID=Ggra9069.t1|Name=Ggra9069.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=307bp
MTPLRPRALPLLLLLCAAALLLQPRVADALFCGRDNCYELLSVPRDASTA
DIRRAYRRLSSDAHPDKNPGDEAAAARFRALSAAYEALLDAQKRAKYDDF
LDNPAKYWGFLQSISTEVYAPKSNVLAVLAGIVAVATLMHWLHINRAYSN
ALRRVKESRPFQQELARLLKANKAASREQAENMIHLQVEGLQPPQYTDLL
LFKLVKLPQRAFHNLAWHLNWFVSYNIRKLDYTTEHKLYLIQRNMHLSDQ
QWGATSDKIKNLYLNEQLWQPEKCNQFLKMGRTQRNRLAKGKKKTHSQPE
PVNTSE*
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spliced messenger RNA

>Ggra9069.t1 ID=Ggra9069.t1|Name=Ggra9069.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=921bp|location=Sequence derived from alignment at tig00000176_pilon:103020..103940+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACgccgctgcgcccgcgagccctgccgctgctgctgcttttgtgcgc
cgccgcgctgctgctgcagccgcgcgtcgccgacgcgctcttctgcggcc
gcGACAACTGCTACGAGCTACTGTCCGTgccgcgcgacgcctccaccgcc
gacatccgccgcgcctatcgccgcctctcctccgacgccCACCCGGACAA
GAACCCGGGCGATGAAGCCGCCGCGGCCCGCTTCCGCGCCCTGTCCGCCG
CGTACGAGGCGCTGCTCGACGCCCAAAAGCGCGCAAAGTACGACGACTTT
CTGGACAACCCCGCAAAGTACTGGGGCTTCCTGCAGTCCATCAGCACCGA
GGTGTACGCGCCCAAGTCCAACGTGCTCGCCGTGCTCGCCGGCATCGTTG
CCGTCGCCACGCTCATGCACTGGCTGCATATCAACCGCGCCTACTCCAAT
GCGCTGCGCCGCGTCAAGGAGTCGCGCCCCTTCCAGCAGGAGCTTGCGCG
CCTGCTCAAGGCAAACAAGGCCGCGTCCAGGGAGCAGGCGGAGAACATGA
TCCACCTGCAAGTCGAGGGGCTGCAGCCGCCGCAGTACACCGACCTGCTG
CTGTTCAAGCTCGTCAAGCTGCCGCAGCGCGCCTTTCACAACCTCGCGTG
GCACCTCAACTGGTTTGTGTCGTACAACATCCGCAAGCTCGACTACACCA
CCGAGCACAAGCTCTACCTCATTCAGCGCAACATGCACCTCTCCGACCAG
CAGTGGGGCGCCACCTCCGACAAGATCAAGAACCTCTACCTCAACGAGCA
GCTGTGGCAGCCCGAAAAGTGCAACCAATTCCTCAAGATGGGCCGCACCC
AGCGCAATCGCTTGGCCAAAGGAAAGAAGAAGACCCACTCTCAACCCGAG
CCCGTTAACACCTCCGAGTAA
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protein sequence of Ggra9069.t1

>Ggra9069.t1 ID=Ggra9069.t1|Name=Ggra9069.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=307bp
MTPLRPRALPLLLLLCAAALLLQPRVADALFCGRDNCYELLSVPRDASTA
DIRRAYRRLSSDAHPDKNPGDEAAAARFRALSAAYEALLDAQKRAKYDDF
LDNPAKYWGFLQSISTEVYAPKSNVLAVLAGIVAVATLMHWLHINRAYSN
ALRRVKESRPFQQELARLLKANKAASREQAENMIHLQVEGLQPPQYTDLL
LFKLVKLPQRAFHNLAWHLNWFVSYNIRKLDYTTEHKLYLIQRNMHLSDQ
QWGATSDKIKNLYLNEQLWQPEKCNQFLKMGRTQRNRLAKGKKKTHSQPE
PVNTSE*
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mRNA from alignment at tig00000176_pilon:103020..103940+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9069.t1 ID=Ggra9069.t1|Name=Ggra9069.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=921bp|location=Sequence derived from alignment at tig00000176_pilon:103020..103940+ (Gracilaria gracilis GNS1m male)
ATGACgccgctgcgcccgcgagccctgccgctgctgctgcttttgtgcgc
cgccgcgctgctgctgcagccgcgcgtcgccgacgcgctcttctgcggcc
gcGACAACTGCTACGAGCTACTGTCCGTgccgcgcgacgcctccaccgcc
gacatccgccgcgcctatcgccgcctctcctccgacgccCACCCGGACAA
GAACCCGGGCGATGAAGCCGCCGCGGCCCGCTTCCGCGCCCTGTCCGCCG
CGTACGAGGCGCTGCTCGACGCCCAAAAGCGCGCAAAGTACGACGACTTT
CTGGACAACCCCGCAAAGTACTGGGGCTTCCTGCAGTCCATCAGCACCGA
GGTGTACGCGCCCAAGTCCAACGTGCTCGCCGTGCTCGCCGGCATCGTTG
CCGTCGCCACGCTCATGCACTGGCTGCATATCAACCGCGCCTACTCCAAT
GCGCTGCGCCGCGTCAAGGAGTCGCGCCCCTTCCAGCAGGAGCTTGCGCG
CCTGCTCAAGGCAAACAAGGCCGCGTCCAGGGAGCAGGCGGAGAACATGA
TCCACCTGCAAGTCGAGGGGCTGCAGCCGCCGCAGTACACCGACCTGCTG
CTGTTCAAGCTCGTCAAGCTGCCGCAGCGCGCCTTTCACAACCTCGCGTG
GCACCTCAACTGGTTTGTGTCGTACAACATCCGCAAGCTCGACTACACCA
CCGAGCACAAGCTCTACCTCATTCAGCGCAACATGCACCTCTCCGACCAG
CAGTGGGGCGCCACCTCCGACAAGATCAAGAACCTCTACCTCAACGAGCA
GCTGTGGCAGCCCGAAAAGTGCAACCAATTCCTCAAGATGGGCCGCACCC
AGCGCAATCGCTTGGCCAAAGGAAAGAAGAAGACCCACTCTCAACCCGAG
CCCGTTAACACCTCCGAGTAA
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Coding sequence (CDS) from alignment at tig00000176_pilon:103020..103940+

>Ggra9069.t1 ID=Ggra9069.t1|Name=Ggra9069.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=921bp|location=Sequence derived from alignment at tig00000176_pilon:103020..103940+ (Gracilaria gracilis GNS1m male)
ATGACgccgctgcgcccgcgagccctgccgctgctgctgcttttgtgcgc
cgccgcgctgctgctgcagccgcgcgtcgccgacgcgctcttctgcggcc
gcGACAACTGCTACGAGCTACTGTCCGTgccgcgcgacgcctccaccgcc
gacatccgccgcgcctatcgccgcctctcctccgacgccCACCCGGACAA
GAACCCGGGCGATGAAGCCGCCGCGGCCCGCTTCCGCGCCCTGTCCGCCG
CGTACGAGGCGCTGCTCGACGCCCAAAAGCGCGCAAAGTACGACGACTTT
CTGGACAACCCCGCAAAGTACTGGGGCTTCCTGCAGTCCATCAGCACCGA
GGTGTACGCGCCCAAGTCCAACGTGCTCGCCGTGCTCGCCGGCATCGTTG
CCGTCGCCACGCTCATGCACTGGCTGCATATCAACCGCGCCTACTCCAAT
GCGCTGCGCCGCGTCAAGGAGTCGCGCCCCTTCCAGCAGGAGCTTGCGCG
CCTGCTCAAGGCAAACAAGGCCGCGTCCAGGGAGCAGGCGGAGAACATGA
TCCACCTGCAAGTCGAGGGGCTGCAGCCGCCGCAGTACACCGACCTGCTG
CTGTTCAAGCTCGTCAAGCTGCCGCAGCGCGCCTTTCACAACCTCGCGTG
GCACCTCAACTGGTTTGTGTCGTACAACATCCGCAAGCTCGACTACACCA
CCGAGCACAAGCTCTACCTCATTCAGCGCAACATGCACCTCTCCGACCAG
CAGTGGGGCGCCACCTCCGACAAGATCAAGAACCTCTACCTCAACGAGCA
GCTGTGGCAGCCCGAAAAGTGCAACCAATTCCTCAAGATGGGCCGCACCC
AGCGCAATCGCTTGGCCAAAGGAAAGAAGAAGACCCACTCTCAACCCGAG
CCCGTTAACACCTCCGAGTAA
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