Ggra9057.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9057.t1
Unique Name	Ggra9057.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	656

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000176_pilon	contig	tig00000176_pilon:55457..57424 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	72019.SARC_05368T0
PFAMs	ABC_membrane,ABC_tran
Max annot lvl	33154\|Opisthokonta
KEGG ko	ko:K05658
KEGG TC	3.A.1.201
KEGG Pathway	ko02010,ko04976,ko05206,ko05226,map02010,map04976,map05206,map05226
Evalue	9.97e-153
EggNOG OGs	COG1132@1\|root,KOG0055@2759\|Eukaryota,38E88@33154\|Opisthokonta
EC	3.6.3.44
Description	ATPase activity, coupled to transmembrane movement of substances
COG category	Q
BRITE	ko00000,ko00001,ko01000,ko02000,ko04090,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9057	Ggra9057	Gracilaria gracilis GNS1m male	gene	tig00000176_pilon 55457..57424 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9057.t1.start1	Ggra9057.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000176_pilon 55457..55459 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9057.t1.CDS1	Ggra9057.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000176_pilon 55457..57424 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9057.t1.exon1	Ggra9057.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000176_pilon 55457..57424 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9057.t1.stop1	Ggra9057.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000176_pilon 57422..57424 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9057.t1	Ggra9057.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000176_pilon 55457..57424 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000176_pilon:55457..57424+
coding sequence from alignment at tig00000176_pilon:55457..57424+

mRNA sequence

>Ggra9057.t1 ID=Ggra9057.t1|Name=Ggra9057.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=656bp
MELQTIERQKFEGERQELADGSDDQEVQVFGHPLTSKDSAFVSTNKAATD
SISQPGQCIGDAEDDDKPPFDKKLFLRSLLLNRSEWPLIALGVFGSILQA
VVLPLTSIPLTQVINVMLHDNSTSGIRKWCVGFLILAGMAFVGDFLQYSA
LKVAGEVLTIKLRRLAFRSLLKQEMGYFDLQENSLGSLTQLLSAEATAVK
GLTGDLLGITMNLLAALCSGLIISFATCWRLALIVLAILPGNIIGGYFVV
QVSAGIDSTTRKAFSAANGIAVEAVDNISTIRHLGVEDLFVDRYNAKISS
TLVAKRKSSLVNGVAYGFSEFCKSMIWYATYKAGGRFVEDGYCSYDEMFT
STLALMFSAAMLGGAAAFVPDIVAAKLGATHIYRLIDRQSEVDPTDPGGE
NIRGIGKGVSMKKVYFEYPRRPDCRVLCGLSMDIDRGKTIAVVGPSGHGK
STIISLLQRLYSIRKGSINFDDKNIDDINVASLRSTMGLVSQEPELFNRS
VFDNIAYGANLGGESVITVNDVEEAAKLANAHDFIQKLPQGYNTLVGTRG
DSLSGGQKQRVAIARSVIRKPPLLLLDEATSALDSESEKSVQSALENAIQ
GRTTVLVAHRLSTIRNADVIAVVRRGVVVELGDHEALMRRNGEYSKLVEH
QISDV*

spliced messenger RNA

>Ggra9057.t1 ID=Ggra9057.t1|Name=Ggra9057.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1968bp|location=Sequence derived from alignment at tig00000176_pilon:55457..57424+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCTGCAAACCATAGAGAGACAGAAGTTTGAGGGGGAAAGACAAGA
GCTAGCGGATGGGTCCGATGATCAAGAGGTACAAGTGTTTGGGCATCCTC
TTACAAGCAAAGATTCCGCTTTCGTCAGTACTAACAAGGCGGCCACGGAC
TCAATATCTCAACCAGGCCAATGTATAGGAGATGCAGAGGACGACGACAA
ACCGCCTTTCGACAAGAAACTCTTCCTGCGATCTCTCCTGTTGAACCGCA
GCGAGTGGCCCCTTATTGCACTTGGCGTTTTCGGCTCTATTCTCCAAGCC
GTCGTATTACCGCTTACTTCAATTCCTCTAACACAGGTGATTAACGTCAT
GCTCCACGATAATAGCACCAGCGGAATTCGAAAGTGGTGCGTTGGTTTTC
TCATTCTCGCAGGGATGGCTTTCGTTGGAGATTTCTTGCAGTACAGTGCA
CTCAAAGTTGCAGGCGAAGTTCTAACAATCAAACTTCGCCGGCTTGCATT
CCGTTCTTTACTCAAACAGGAGATGGGATACTTTGATCTTCAAGAAAATT
CTTTAGGGTCATTGACTCAGCTTCTTTCAGCTGAAGCTACTGCAGTGAAA
GGCCTTACAGGGGATCTTTTGGGCATCACAATGAACCTTCTCGCCGCACT
TTGTTCTGGGTTGATAATTTCATTCGCTACGTGTTGGCGTCTGGCTCTGA
TTGTGTTAGCGATTCTCCCTGGAAACATTATCGGTGGTTACTTCGTAGTT
CAGGTTTCCGCTGGCATTGATTCGACTACTCGAAAGGCGTTTTCTGCTGC
AAACGGAATTGCGGTGGAAGCCGTTGATAACATTTCCACAATACGGCACC
TTGGGGTCGAAGACTTGTTCGTCGACCGCTATAATGCAAAGATTAGCAGC
ACTCTCGTCGCTAAGCGTAAGAGCAGCCTTGTGAACGGAGTGGCATACGG
CTTTTCAGAGTTCTGCAAGTCCATGATTTGGTACGCAACTTACAAAGCTG
GGGGAAGGTTTGTAGAGGACGGTTATTGTTCGTATGATGAGATGTTCACG
AGCACTTTGGCTTTGATGTTTAGCGCAGCCATGTTGGGTGGGGCGGCTGC
GTTTGTTCCAGATATTGTTGCAGCCAAATTGGGAGCCACGCATATTTACC
GTTTGATAGACCGCCAGAGCGAAGTCGACCCAACCGACCCAGGCGGAGAG
AATATCCGTGGAATCGGAAAAGGAGTGTCAATGAAGAAGGTGTATTTTGA
GTATCCGAGAAGGCCAGATTGTCGAGTTCTTTGTGGCCTTAGTATGGACA
TTGATCGTGGAAAGACTATTGCCGTGGTAGGACCTAGTGGCCATGGGAAG
AGCACTATCATTTCCTTATTACAACGATTATACTCTATTCGAAAGGGAAG
CATCAACTTTGACGACAAGAATATAGATGACATTAATGTTGCAAGTCTCC
GCAGCACCATGGGGCTCGTATCTCAAGAGCCGGAACTTTTCAACAGATCT
GTATTCGATAATATTGCTTACGGTGCGAATCTTGGGGGTGAAAGTGTCAT
AACGGTCAATGACGTTGAAGAGGCTGCCAAGCTAGCGAACGCGCACGATT
TTATCCAGAAGTTGCCGCAGGGATACAATACGCTTGTAGGTACAAGAGGA
GATTCGTTAAGTGGGGGGCAGAAACAGCGGGTGGCCATTGCTAGGAGTGT
GATTCGAAAACCCCCCTTGTTATTGCTGGATGAAGCAACAAGCGCTTTGG
ATAGTGAGAGTGAAAAGTCTGTGCAGTCAGCCCTTGAAAATGCGATTCAG
GGAAGAACAACAGTTCTTGTGGCGCATAGATTATCTACAATTCGGAATGC
GGATGTTATTGCAGTCGTCCGAAGAGGAGTTGTTGTCGAACTCGGAGACC
ACGAAGCTCTCATGCGTAGAAATGGAGAGTACTCGAAGTTAGTTGAACAC
CAGATTTCAGATGTTTGA

protein sequence of Ggra9057.t1

>Ggra9057.t1 ID=Ggra9057.t1|Name=Ggra9057.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=656bp
MELQTIERQKFEGERQELADGSDDQEVQVFGHPLTSKDSAFVSTNKAATD
SISQPGQCIGDAEDDDKPPFDKKLFLRSLLLNRSEWPLIALGVFGSILQA
VVLPLTSIPLTQVINVMLHDNSTSGIRKWCVGFLILAGMAFVGDFLQYSA
LKVAGEVLTIKLRRLAFRSLLKQEMGYFDLQENSLGSLTQLLSAEATAVK
GLTGDLLGITMNLLAALCSGLIISFATCWRLALIVLAILPGNIIGGYFVV
QVSAGIDSTTRKAFSAANGIAVEAVDNISTIRHLGVEDLFVDRYNAKISS
TLVAKRKSSLVNGVAYGFSEFCKSMIWYATYKAGGRFVEDGYCSYDEMFT
STLALMFSAAMLGGAAAFVPDIVAAKLGATHIYRLIDRQSEVDPTDPGGE
NIRGIGKGVSMKKVYFEYPRRPDCRVLCGLSMDIDRGKTIAVVGPSGHGK
STIISLLQRLYSIRKGSINFDDKNIDDINVASLRSTMGLVSQEPELFNRS
VFDNIAYGANLGGESVITVNDVEEAAKLANAHDFIQKLPQGYNTLVGTRG
DSLSGGQKQRVAIARSVIRKPPLLLLDEATSALDSESEKSVQSALENAIQ
GRTTVLVAHRLSTIRNADVIAVVRRGVVVELGDHEALMRRNGEYSKLVEH
QISDV*

mRNA from alignment at tig00000176_pilon:55457..57424+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9057.t1 ID=Ggra9057.t1|Name=Ggra9057.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1968bp|location=Sequence derived from alignment at tig00000176_pilon:55457..57424+ (Gracilaria gracilis GNS1m male)
ATGGAGCTGCAAACCATAGAGAGACAGAAGTTTGAGGGGGAAAGACAAGA
GCTAGCGGATGGGTCCGATGATCAAGAGGTACAAGTGTTTGGGCATCCTC
TTACAAGCAAAGATTCCGCTTTCGTCAGTACTAACAAGGCGGCCACGGAC
TCAATATCTCAACCAGGCCAATGTATAGGAGATGCAGAGGACGACGACAA
ACCGCCTTTCGACAAGAAACTCTTCCTGCGATCTCTCCTGTTGAACCGCA
GCGAGTGGCCCCTTATTGCACTTGGCGTTTTCGGCTCTATTCTCCAAGCC
GTCGTATTACCGCTTACTTCAATTCCTCTAACACAGGTGATTAACGTCAT
GCTCCACGATAATAGCACCAGCGGAATTCGAAAGTGGTGCGTTGGTTTTC
TCATTCTCGCAGGGATGGCTTTCGTTGGAGATTTCTTGCAGTACAGTGCA
CTCAAAGTTGCAGGCGAAGTTCTAACAATCAAACTTCGCCGGCTTGCATT
CCGTTCTTTACTCAAACAGGAGATGGGATACTTTGATCTTCAAGAAAATT
CTTTAGGGTCATTGACTCAGCTTCTTTCAGCTGAAGCTACTGCAGTGAAA
GGCCTTACAGGGGATCTTTTGGGCATCACAATGAACCTTCTCGCCGCACT
TTGTTCTGGGTTGATAATTTCATTCGCTACGTGTTGGCGTCTGGCTCTGA
TTGTGTTAGCGATTCTCCCTGGAAACATTATCGGTGGTTACTTCGTAGTT
CAGGTTTCCGCTGGCATTGATTCGACTACTCGAAAGGCGTTTTCTGCTGC
AAACGGAATTGCGGTGGAAGCCGTTGATAACATTTCCACAATACGGCACC
TTGGGGTCGAAGACTTGTTCGTCGACCGCTATAATGCAAAGATTAGCAGC
ACTCTCGTCGCTAAGCGTAAGAGCAGCCTTGTGAACGGAGTGGCATACGG
CTTTTCAGAGTTCTGCAAGTCCATGATTTGGTACGCAACTTACAAAGCTG
GGGGAAGGTTTGTAGAGGACGGTTATTGTTCGTATGATGAGATGTTCACG
AGCACTTTGGCTTTGATGTTTAGCGCAGCCATGTTGGGTGGGGCGGCTGC
GTTTGTTCCAGATATTGTTGCAGCCAAATTGGGAGCCACGCATATTTACC
GTTTGATAGACCGCCAGAGCGAAGTCGACCCAACCGACCCAGGCGGAGAG
AATATCCGTGGAATCGGAAAAGGAGTGTCAATGAAGAAGGTGTATTTTGA
GTATCCGAGAAGGCCAGATTGTCGAGTTCTTTGTGGCCTTAGTATGGACA
TTGATCGTGGAAAGACTATTGCCGTGGTAGGACCTAGTGGCCATGGGAAG
AGCACTATCATTTCCTTATTACAACGATTATACTCTATTCGAAAGGGAAG
CATCAACTTTGACGACAAGAATATAGATGACATTAATGTTGCAAGTCTCC
GCAGCACCATGGGGCTCGTATCTCAAGAGCCGGAACTTTTCAACAGATCT
GTATTCGATAATATTGCTTACGGTGCGAATCTTGGGGGTGAAAGTGTCAT
AACGGTCAATGACGTTGAAGAGGCTGCCAAGCTAGCGAACGCGCACGATT
TTATCCAGAAGTTGCCGCAGGGATACAATACGCTTGTAGGTACAAGAGGA
GATTCGTTAAGTGGGGGGCAGAAACAGCGGGTGGCCATTGCTAGGAGTGT
GATTCGAAAACCCCCCTTGTTATTGCTGGATGAAGCAACAAGCGCTTTGG
ATAGTGAGAGTGAAAAGTCTGTGCAGTCAGCCCTTGAAAATGCGATTCAG
GGAAGAACAACAGTTCTTGTGGCGCATAGATTATCTACAATTCGGAATGC
GGATGTTATTGCAGTCGTCCGAAGAGGAGTTGTTGTCGAACTCGGAGACC
ACGAAGCTCTCATGCGTAGAAATGGAGAGTACTCGAAGTTAGTTGAACAC
CAGATTTCAGATGTTTGA

Coding sequence (CDS) from alignment at tig00000176_pilon:55457..57424+

>Ggra9057.t1 ID=Ggra9057.t1|Name=Ggra9057.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1968bp|location=Sequence derived from alignment at tig00000176_pilon:55457..57424+ (Gracilaria gracilis GNS1m male)
ATGGAGCTGCAAACCATAGAGAGACAGAAGTTTGAGGGGGAAAGACAAGA
GCTAGCGGATGGGTCCGATGATCAAGAGGTACAAGTGTTTGGGCATCCTC
TTACAAGCAAAGATTCCGCTTTCGTCAGTACTAACAAGGCGGCCACGGAC
TCAATATCTCAACCAGGCCAATGTATAGGAGATGCAGAGGACGACGACAA
ACCGCCTTTCGACAAGAAACTCTTCCTGCGATCTCTCCTGTTGAACCGCA
GCGAGTGGCCCCTTATTGCACTTGGCGTTTTCGGCTCTATTCTCCAAGCC
GTCGTATTACCGCTTACTTCAATTCCTCTAACACAGGTGATTAACGTCAT
GCTCCACGATAATAGCACCAGCGGAATTCGAAAGTGGTGCGTTGGTTTTC
TCATTCTCGCAGGGATGGCTTTCGTTGGAGATTTCTTGCAGTACAGTGCA
CTCAAAGTTGCAGGCGAAGTTCTAACAATCAAACTTCGCCGGCTTGCATT
CCGTTCTTTACTCAAACAGGAGATGGGATACTTTGATCTTCAAGAAAATT
CTTTAGGGTCATTGACTCAGCTTCTTTCAGCTGAAGCTACTGCAGTGAAA
GGCCTTACAGGGGATCTTTTGGGCATCACAATGAACCTTCTCGCCGCACT
TTGTTCTGGGTTGATAATTTCATTCGCTACGTGTTGGCGTCTGGCTCTGA
TTGTGTTAGCGATTCTCCCTGGAAACATTATCGGTGGTTACTTCGTAGTT
CAGGTTTCCGCTGGCATTGATTCGACTACTCGAAAGGCGTTTTCTGCTGC
AAACGGAATTGCGGTGGAAGCCGTTGATAACATTTCCACAATACGGCACC
TTGGGGTCGAAGACTTGTTCGTCGACCGCTATAATGCAAAGATTAGCAGC
ACTCTCGTCGCTAAGCGTAAGAGCAGCCTTGTGAACGGAGTGGCATACGG
CTTTTCAGAGTTCTGCAAGTCCATGATTTGGTACGCAACTTACAAAGCTG
GGGGAAGGTTTGTAGAGGACGGTTATTGTTCGTATGATGAGATGTTCACG
AGCACTTTGGCTTTGATGTTTAGCGCAGCCATGTTGGGTGGGGCGGCTGC
GTTTGTTCCAGATATTGTTGCAGCCAAATTGGGAGCCACGCATATTTACC
GTTTGATAGACCGCCAGAGCGAAGTCGACCCAACCGACCCAGGCGGAGAG
AATATCCGTGGAATCGGAAAAGGAGTGTCAATGAAGAAGGTGTATTTTGA
GTATCCGAGAAGGCCAGATTGTCGAGTTCTTTGTGGCCTTAGTATGGACA
TTGATCGTGGAAAGACTATTGCCGTGGTAGGACCTAGTGGCCATGGGAAG
AGCACTATCATTTCCTTATTACAACGATTATACTCTATTCGAAAGGGAAG
CATCAACTTTGACGACAAGAATATAGATGACATTAATGTTGCAAGTCTCC
GCAGCACCATGGGGCTCGTATCTCAAGAGCCGGAACTTTTCAACAGATCT
GTATTCGATAATATTGCTTACGGTGCGAATCTTGGGGGTGAAAGTGTCAT
AACGGTCAATGACGTTGAAGAGGCTGCCAAGCTAGCGAACGCGCACGATT
TTATCCAGAAGTTGCCGCAGGGATACAATACGCTTGTAGGTACAAGAGGA
GATTCGTTAAGTGGGGGGCAGAAACAGCGGGTGGCCATTGCTAGGAGTGT
GATTCGAAAACCCCCCTTGTTATTGCTGGATGAAGCAACAAGCGCTTTGG
ATAGTGAGAGTGAAAAGTCTGTGCAGTCAGCCCTTGAAAATGCGATTCAG
GGAAGAACAACAGTTCTTGTGGCGCATAGATTATCTACAATTCGGAATGC
GGATGTTATTGCAGTCGTCCGAAGAGGAGTTGTTGTCGAACTCGGAGACC
ACGAAGCTCTCATGCGTAGAAATGGAGAGTACTCGAAGTTAGTTGAACAC
CAGATTTCAGATGTTTGA