Ggra9049.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9049.t1
Unique NameGgra9049.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length228
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000176_piloncontigtig00000176_pilon:41105..41788 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog132113.XP_003490937.1
Preferred nameSPON1
PFAMsKunitz_BPTI,Reeler,Spond_N,TSP_1
Max annot lvl33208|Metazoa
GOsGO:0000902,GO:0000904,GO:0005575,GO:0005576,GO:0005604,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005788,GO:0006928,GO:0006935,GO:0007155,GO:0007275,GO:0007399,GO:0007409,GO:0007411,GO:0007413,GO:0007517,GO:0008037,GO:0008038,GO:0008045,GO:0008150,GO:0009605,GO:0009653,GO:0009987,GO:0012505,GO:0016043,GO:0016203,GO:0022008,GO:0022610,GO:0030016,GO:0030017,GO:0030030,GO:0030154,GO:0030182,GO:0031012,GO:0031175,GO:0031430,GO:0031672,GO:0031974,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0033563,GO:0033627,GO:0040011,GO:0042221,GO:0042330,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043292,GO:0044421,GO:0044422,GO:0044424,GO:0044432,GO:0044444,GO:0044446,GO:0044449,GO:0044464,GO:0048468,GO:0048513,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050896,GO:0055120,GO:0060538,GO:0061061,GO:0061564,GO:0062023,GO:0070013,GO:0071840,GO:0097485,GO:0099080,GO:0099081,GO:0099512,GO:0106030,GO:0120036,GO:0120039
Evalue1.96e-18
EggNOG OGsKOG3539@1|root,KOG3539@2759|Eukaryota,38FW7@33154|Opisthokonta,3BEQ3@33208|Metazoa,3CYKJ@33213|Bilateria,41TS9@6656|Arthropoda,3SKHS@50557|Insecta,46EUV@7399|Hymenoptera
DescriptionSpondin_N
COG categoryW
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9049Ggra9049Gracilaria gracilis GNS1m malegenetig00000176_pilon 41105..41788 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9049.t1.stop1Ggra9049.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000176_pilon 41105..41107 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9049.t1.CDS1Ggra9049.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000176_pilon 41105..41788 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9049.t1.exon1Ggra9049.t1.exon1Gracilaria gracilis GNS1m maleexontig00000176_pilon 41105..41788 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9049.t1.start1Ggra9049.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000176_pilon 41786..41788 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9049.t1Ggra9049.t1Gracilaria gracilis GNS1m malepolypeptidetig00000176_pilon 41105..41788 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9049.t1 ID=Ggra9049.t1|Name=Ggra9049.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=228bp
MLSKGIIVLLTFAILQAVIASETMPSCKRAAYKITFRNFLTPAKFGTKIP
NDGLVFSPMTGASHSNRISILTVRGFASPQVEQIAETGDNRRLVKLAEHL
RDAEKGVKTVVAASGPTMPGNRTTLRFMVDCNHPFITFVGMIAPSPDWLV
LIANMNLYENGRFIPSAFGHLIAYDAGTDDGGDFTDPTDASLDMPSEPPK
NIAPLVEDETDPFCGRPVGTYFIKRVQ*
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spliced messenger RNA

>Ggra9049.t1 ID=Ggra9049.t1|Name=Ggra9049.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=684bp|location=Sequence derived from alignment at tig00000176_pilon:41105..41788- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCAGCAAAGGAATAATTGTGTTGCTTACCTTTGCAATTCTCCAAGC
GGTGATTGCATCGGAAACTATGCCCTCATGCAAGAGGGCGGCTTACAAAA
TAACGTTCCGCAACTTTCTAACACCCGCTAAATTTGGTACAAAGATACCA
AATGATGGTCTCGTCTTCTCCCCCATGACAGGAGCTTCGCACTCAAATCG
CATTTCAATTCTCACAGTACGTGGATTCGCCTCTCCTCAAGTGGAACAAA
TTGCCGAGACCGGCGATAATCGCCGTCTAGTCAAGCTTGCGGAACACCTT
CGAGATGCCGAGAAAGGTGTGAAGACGGTCGTTGCAGCCAGTGGCCCCAC
AATGCCTGGAAACCGTACAACCTTGCGTTTCATGGTGGACTGCAACCATC
CGTTCATCACGTTCGTTGGTATGATCGCTCCGTCTCCAGATTGGTTGGTG
CTCATAGCCAACATGAACTTGTATGAGAATGGGCGCTTCATCCCGTCAGC
ATTTGGTCACCTTATTGCATACGATGCTGGTACTGACGATGGTGGAGACT
TCACTGATCCAACAGATGCTAGCCTTGATATGCCGTCTGAGCCACCCAAG
AACATTGCCCCGTTGGTGGAAGATGAGACGGACCCATTCTGTGGTCGCCC
GGTAGGTACCTACTTCATAAAGAGGGTTCAATAA
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protein sequence of Ggra9049.t1

>Ggra9049.t1 ID=Ggra9049.t1|Name=Ggra9049.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=228bp
MLSKGIIVLLTFAILQAVIASETMPSCKRAAYKITFRNFLTPAKFGTKIP
NDGLVFSPMTGASHSNRISILTVRGFASPQVEQIAETGDNRRLVKLAEHL
RDAEKGVKTVVAASGPTMPGNRTTLRFMVDCNHPFITFVGMIAPSPDWLV
LIANMNLYENGRFIPSAFGHLIAYDAGTDDGGDFTDPTDASLDMPSEPPK
NIAPLVEDETDPFCGRPVGTYFIKRVQ*
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mRNA from alignment at tig00000176_pilon:41105..41788-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9049.t1 ID=Ggra9049.t1|Name=Ggra9049.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=684bp|location=Sequence derived from alignment at tig00000176_pilon:41105..41788- (Gracilaria gracilis GNS1m male)
ATGCTCAGCAAAGGAATAATTGTGTTGCTTACCTTTGCAATTCTCCAAGC
GGTGATTGCATCGGAAACTATGCCCTCATGCAAGAGGGCGGCTTACAAAA
TAACGTTCCGCAACTTTCTAACACCCGCTAAATTTGGTACAAAGATACCA
AATGATGGTCTCGTCTTCTCCCCCATGACAGGAGCTTCGCACTCAAATCG
CATTTCAATTCTCACAGTACGTGGATTCGCCTCTCCTCAAGTGGAACAAA
TTGCCGAGACCGGCGATAATCGCCGTCTAGTCAAGCTTGCGGAACACCTT
CGAGATGCCGAGAAAGGTGTGAAGACGGTCGTTGCAGCCAGTGGCCCCAC
AATGCCTGGAAACCGTACAACCTTGCGTTTCATGGTGGACTGCAACCATC
CGTTCATCACGTTCGTTGGTATGATCGCTCCGTCTCCAGATTGGTTGGTG
CTCATAGCCAACATGAACTTGTATGAGAATGGGCGCTTCATCCCGTCAGC
ATTTGGTCACCTTATTGCATACGATGCTGGTACTGACGATGGTGGAGACT
TCACTGATCCAACAGATGCTAGCCTTGATATGCCGTCTGAGCCACCCAAG
AACATTGCCCCGTTGGTGGAAGATGAGACGGACCCATTCTGTGGTCGCCC
GGTAGGTACCTACTTCATAAAGAGGGTTCAATAA
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Coding sequence (CDS) from alignment at tig00000176_pilon:41105..41788-

>Ggra9049.t1 ID=Ggra9049.t1|Name=Ggra9049.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=684bp|location=Sequence derived from alignment at tig00000176_pilon:41105..41788- (Gracilaria gracilis GNS1m male)
ATGCTCAGCAAAGGAATAATTGTGTTGCTTACCTTTGCAATTCTCCAAGC
GGTGATTGCATCGGAAACTATGCCCTCATGCAAGAGGGCGGCTTACAAAA
TAACGTTCCGCAACTTTCTAACACCCGCTAAATTTGGTACAAAGATACCA
AATGATGGTCTCGTCTTCTCCCCCATGACAGGAGCTTCGCACTCAAATCG
CATTTCAATTCTCACAGTACGTGGATTCGCCTCTCCTCAAGTGGAACAAA
TTGCCGAGACCGGCGATAATCGCCGTCTAGTCAAGCTTGCGGAACACCTT
CGAGATGCCGAGAAAGGTGTGAAGACGGTCGTTGCAGCCAGTGGCCCCAC
AATGCCTGGAAACCGTACAACCTTGCGTTTCATGGTGGACTGCAACCATC
CGTTCATCACGTTCGTTGGTATGATCGCTCCGTCTCCAGATTGGTTGGTG
CTCATAGCCAACATGAACTTGTATGAGAATGGGCGCTTCATCCCGTCAGC
ATTTGGTCACCTTATTGCATACGATGCTGGTACTGACGATGGTGGAGACT
TCACTGATCCAACAGATGCTAGCCTTGATATGCCGTCTGAGCCACCCAAG
AACATTGCCCCGTTGGTGGAAGATGAGACGGACCCATTCTGTGGTCGCCC
GGTAGGTACCTACTTCATAAAGAGGGTTCAATAA
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