Ggra9087.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9087.t1
Unique NameGgra9087.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length620
Homology
BLAST of Ggra9087.t1 vs. uniprot
Match: A0A2V3IS04 (Pentatricopeptide repeat-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IS04_9FLOR)

HSP 1 Score: 282 bits (721), Expect = 9.720e-84
Identity = 350/491 (71.28%), Postives = 402/491 (81.87%), Query Frame = 0
Query:  116 GSRTRGDMSLKRIIVDGSQSERNEVIRVLREGKMSMALHDLNDILITLTRQKRYNEAMSVVELTERKPLSDLLTVSKAVKAYTIMIDLYGRARQLDRAFSIFRAMRRKGVQPNLVTYNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFAEARHWGFQKLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACRRYRQCSRVKKLWDVIVKYNIKPSRLYYPGLIGMAVSAGELPIACAIVLHAYARGNLRRVTLNSEIPGIHAMACALVYLRHELHVNDEETASEENLRIAERLHVVFGSMPMTSEQMDAIPASEARDLCISWGDLKVGEDGHPA---RTSNRGRTS 603
            GSR      +  ++++G+Q++RNE++++LREG+  +++H+ N+++  L RQKR +EA+SVVELTE KPLSDL+T+SK+VK YTI+IDLYG+ + L+RAFSIF  M RKGVQPN++   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  E RHWG+ +  XXXXXXXXXXXXXXXXXX               XXXXXXXXXXXXXXXXXXXXXX           XXXXXXXXXXXXXXACRR+RQCSRV+ LWDVIVKYNIKPSR+YYPGLI MAVS GEL IACAIVLHAYARG+LRRV LNSE P +HAMACALVYLRHEL V + E A++E  +  ERL VVFGS+ MT EQMD++ +  A +  +SWGD+++GED  PA   R SNR + S
Sbjct:   31 GSRPTMRSKISAVLINGTQAQRNEIMQLLREGQTLLSIHEFNEVVSCLIRQKRLSEALSVVELTEHKPLSDLITISKSVKTYTILIDLYGKTQNLERAFSIFYGMFRKGVQPNVIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETRHWGYTRXXXXXXXXXXXXXXXXXXXXKAELVLKNMVRNRVKXXXXXXXXXXXXXXXXXXXXXXFEVLNRMESKHXXXXXXXXXXXXXXACRRHRQCSRVRALWDVIVKYNIKPSRMYYPGLIAMAVSQGELQIACAIVLHAYARGHLRRVALNSENPALHAMACALVYLRHELRVANSEKATQETRKREERLRVVFGSVAMTVEQMDSMTSLAACEYALSWGDIELGEDDFPAHRQRVSNRNKIS 521          
BLAST of Ggra9087.t1 vs. uniprot
Match: R7Q1B3 (PPR_long domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q1B3_CHOCR)

HSP 1 Score: 151 bits (382), Expect = 4.210e-35
Identity = 257/477 (53.88%), Postives = 303/477 (63.52%), Query Frame = 0
Query:  128 IIVDGSQSERNEVIRVLREGKMSMALHDLNDILITLTRQKRYNEAMSVVELTERKPLSDLLTVSKAVKAYTIMIDLYGRARQLDRAFSIFRAMRRKGVQPNLVTYNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFAEARHWGFQKLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACRRYRQCSRVKKLWDVIVKYNIKPSRLYYPGLIGMAVSAGELPIACAIVLHAYARGNLRRVTLNSEIPGIHAMACALVYLRHELHVNDEETASEENLRIAERLHVVFGSMPMTSEQMDAIPASEARDLCISWGDLKVGEDGHPARTSNRGRTSP 604
            +++ G+  ER   +  L  G   +++   N+IL  + R +R  +A +  +L +R+P   +L   KA K+YTIMID YG+  QL RAF++F  M R G +PN+VT+N XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    +HWGF + NXXXXXXXXXXXXXXXXXXXX                                                            A RR  +  R K +W V++KYNI+PSR YYP LI MA  +G+L +A AI LHAYARG+LRRV LNSE P ++AMACA+ YL H +   D +++ E   +   RL VVF S  M  +Q+  +    A   C SW       D    RT  R   SP
Sbjct:  180 VLLRGNDRERRRFMTELHAGNAKLSIEQFNEILSAMLRMRRVRDAAAFTQLWDREPWLSILRKDKATKSYTIMIDAYGKCNQLARAFTLFYTMTRVGPKPNVVTFNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKHWGFPRANXXXXXXXXXXXXXXXXXXXXERVMANMVANGIRPNEISFGALMDGWTKGGQINRAFEIIERMVNVHDVLPNAVLVGGLIDASRRLNEPGRAKPIWSVVMKYNIRPSRTYYPPLIAMAARSGDLDVASAITLHAYARGSLRRVALNSENPTLYAMACAIAYLLHSIRT-DTKSSQEVKKQHLNRLRVVFNSTAMRPDQLTRLSPEAAYQCCTSWNHT----DSRQTRTERRYNGSP 651          
BLAST of Ggra9087.t1 vs. uniprot
Match: A0A7S1TC13 (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TC13_9RHOD)

HSP 1 Score: 67.4 bits (163), Expect = 4.790e-8
Identity = 34/96 (35.42%), Postives = 60/96 (62.50%), Query Frame = 0
Query:  138 NEVIRVLREGKMSMALHDLNDILITLTRQKRYNEAMSVVELTERKPLSDLLTVSKAVKAYTIMIDLYGRARQLDRAFSIFRAMRRKGVQPNLVTYN 233
            +E   ++   K  +++ DLND L+ L+R ++   A+ VV+  E K    LL     VK  +I+ID+YG+A+ L  A  +F +++++G++PNLVT+N
Sbjct:  182 DEAFSMISAKKFDLSVDDLNDALMMLSRNRKMKAALRVVQ--EAKEKWGLLPPDN-VKTASILIDMYGKAKMLTHAMEVFESIQKRGIKPNLVTFN 274          
BLAST of Ggra9087.t1 vs. uniprot
Match: A0A7S1EV12 (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1EV12_9RHOD)

HSP 1 Score: 63.9 bits (154), Expect = 1.280e-7
Identity = 35/90 (38.89%), Postives = 50/90 (55.56%), Query Frame = 0
Query:  144 LREGKMSMALHDLNDILITLTRQKRYNEAMSVVELTERKPLSDLLTVSKAVKAYTIMIDLYGRARQLDRAFSIFRAMRRKGVQPNLVTYN 233
            + +G    +  DLN+IL  L R +R   AMSV+    +  L        +VK  TI+ID+YG+AR L RAF  +  M   G++PN +TYN
Sbjct:   30 VEKGSYKPSESDLNEILTVLCRARRLTLAMSVINEAHKWNLMP----PTSVKTGTIVIDVYGKARLLTRAFETYEQMMNHGIEPNAITYN 115          
BLAST of Ggra9087.t1 vs. uniprot
Match: A0A7S0ZL82 (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZL82_9RHOD)

HSP 1 Score: 63.9 bits (154), Expect = 4.650e-7
Identity = 35/90 (38.89%), Postives = 50/90 (55.56%), Query Frame = 0
Query:  144 LREGKMSMALHDLNDILITLTRQKRYNEAMSVVELTERKPLSDLLTVSKAVKAYTIMIDLYGRARQLDRAFSIFRAMRRKGVQPNLVTYN 233
            + +G    +  DLN+IL  L R +R   AMSV+    +  L        +VK  TI+ID+YG+AR L RAF  +  M   G++PN +TYN
Sbjct:   30 VEKGSYKPSESDLNEILTVLCRARRLTLAMSVINEAHKWNLMP----PTSVKTGTIVIDVYGKARLLTRAFETYEQMMNHGIEPNAITYN 115          
The following BLAST results are available for this feature:
BLAST of Ggra9087.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2V3IS049.720e-8471.28Pentatricopeptide repeat-containing protein n=1 Ta... [more]
R7Q1B34.210e-3553.88PPR_long domain-containing protein n=1 Tax=Chondru... [more]
A0A7S1TC134.790e-835.42Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A7S1EV121.280e-738.89Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A7S0ZL824.650e-738.89Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 372..400
e-value: 1.6E-5
score: 24.9
coord: 336..364
e-value: 0.035
score: 14.4
IPR002885Pentatricopeptide repeatPFAMPF12854PPR_1coord: 401..432
e-value: 1.1E-9
score: 37.8
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 196..228
e-value: 1.8E-8
score: 32.0
coord: 230..263
e-value: 1.8E-8
score: 32.0
coord: 265..298
e-value: 0.0011
score: 17.0
coord: 371..404
e-value: 3.4E-7
score: 28.0
coord: 301..330
e-value: 8.1E-7
score: 26.8
coord: 406..440
e-value: 1.5E-6
score: 26.0
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 298..332
score: 12.002681
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 333..367
score: 8.988323
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 404..439
score: 9.558311
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 369..403
score: 11.246351
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 263..297
score: 9.667924
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 193..227
score: 11.882107
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 228..262
score: 12.484979
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 368..517
e-value: 1.7E-24
score: 88.9
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 275..367
e-value: 2.3E-21
score: 77.9
coord: 125..274
e-value: 5.4E-31
score: 109.4
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 206..318
e-value: 1.2E-14
score: 54.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 590..619
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..106
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 90..104
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 50..77
NoneNo IPR availablePANTHERPTHR47941PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIALcoord: 163..384
coord: 301..498
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 477..500
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..476
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 501..619

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000176_piloncontigtig00000176_pilon:159584..161443 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9087.t1Ggra9087.t1Gracilaria gracilis GNS1m malemRNAtig00000176_pilon 159584..161443 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9087.t1 ID=Ggra9087.t1|Name=Ggra9087.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=620bp
MAPAFVRYIPNNDTVSPFVASNTLPTQPIATIGGKRTATDSHEKSGTGRK
SVHTNGTRNRQRNYSLFNASSERSQRPGRVKGATRDVYSSKSMEAKRKER
HSAAPTSFRTASGIVGSRTRGDMSLKRIIVDGSQSERNEVIRVLREGKMS
MALHDLNDILITLTRQKRYNEAMSVVELTERKPLSDLLTVSKAVKAYTIM
IDLYGRARQLDRAFSIFRAMRRKGVQPNLVTYNAMIAACSRNQEPSLAYQ
VYQEMTDTGLKPDKFTFGTLIDLSAKCGDVELAFDLSNRMSESGVSKDQT
IYSALMEACGRAGQPERAFMVYEGMKKKGVWPNLIVFSVLIDMCANARDP
ERAFSIFAEARHWGFQKLNVIVYTALIDACAKGGWPEKAELVLQNMIEEQ
VKPNHITFGTLIDGWARKGEFDKAFDVLRRMEVEHRVKPTAILVGGLIDA
CRRYRQCSRVKKLWDVIVKYNIKPSRLYYPGLIGMAVSAGELPIACAIVL
HAYARGNLRRVTLNSEIPGIHAMACALVYLRHELHVNDEETASEENLRIA
ERLHVVFGSMPMTSEQMDAIPASEARDLCISWGDLKVGEDGHPARTSNRG
RTSPFRIGRSRSDKDTGGR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf
IPR033443PPR_long