Ggra9044.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9044.t1
Unique NameGgra9044.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length406
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000176_piloncontigtig00000176_pilon:27522..30890 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7FPJ1
PFAMsadh_short,adh_short_C2
Max annot lvl2759|Eukaryota
KEGG koko:K19877
GOsGO:0003674,GO:0003824,GO:0008150,GO:0008152,GO:0009636,GO:0009987,GO:0010033,GO:0016491,GO:0042221,GO:0050896,GO:0051716,GO:0055114,GO:0070887,GO:0097237,GO:0098754,GO:0110095,GO:0110096,GO:1901700,GO:1901701,GO:1990748
Evalue8.71e-67
EggNOG OGsCOG1028@1|root,KOG1611@2759|Eukaryota
Descriptioncellular detoxification of aldehyde
COG categoryIQ
BRITEko00000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9044Ggra9044Gracilaria gracilis GNS1m malegenetig00000176_pilon 27522..30890 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9044.t1Ggra9044.t1Gracilaria gracilis GNS1m malepolypeptidetig00000176_pilon 27522..30890 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9044.t1.stop1Ggra9044.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000176_pilon 27522..27524 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9044.t1.CDS1Ggra9044.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000176_pilon 27522..28085 -
Ggra9044.t1.CDS2Ggra9044.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000176_pilon 28171..28459 -
Ggra9044.t1.CDS3Ggra9044.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000176_pilon 30464..30596 -
Ggra9044.t1.CDS4Ggra9044.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000176_pilon 30659..30890 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9044.t1.exon1Ggra9044.t1.exon1Gracilaria gracilis GNS1m maleexontig00000176_pilon 27522..28085 -
Ggra9044.t1.exon2Ggra9044.t1.exon2Gracilaria gracilis GNS1m maleexontig00000176_pilon 28171..28459 -
Ggra9044.t1.exon3Ggra9044.t1.exon3Gracilaria gracilis GNS1m maleexontig00000176_pilon 30464..30596 -
Ggra9044.t1.exon4Ggra9044.t1.exon4Gracilaria gracilis GNS1m maleexontig00000176_pilon 30659..30890 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9044.t1.intron1Ggra9044.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000176_pilon 28086..28170 -
Ggra9044.t1.intron2Ggra9044.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000176_pilon 28460..30463 -
Ggra9044.t1.intron3Ggra9044.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000176_pilon 30597..30658 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9044.t1.start1Ggra9044.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000176_pilon 30888..30890 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9044.t1 ID=Ggra9044.t1|Name=Ggra9044.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=406bp
MVVRIRLARWGQRHRPFYRIVAADARAKRDGRFIEVVGTYNPMSHSRLEA
AKNIKRVCLNVERIKYWVSVGAQPTDTVARLLGTAGVLPFSPRVTAGKRT
NQTTTNIQKAFSTRAGLTGLRASRTMGAKPMHARSAHTTPAAAKEASIRN
SDPNAVAVVVGASRGIGLAITQQLVTRWKGRIVATCREPDEAGALSALWQ
FMPDRFSVIRLDVEDEKSIQDAVQNLKEWTEDSRVDLLMHTAGLLHEGEN
MPETSLYRVKADWLQKNLAINLMGPVLVAKHFAPLMTTARKKDRVPSVLA
TLSARVGSISDNSLGGWLSYRASKAGQNQAMKTISIELQRRGVICVALHP
GTVATDLSAPFQKNVKPEKLFPVDDAANWLLDVVDSLEMEDTGGFFAYDG
KPIPY*
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spliced messenger RNA

>Ggra9044.t1 ID=Ggra9044.t1|Name=Ggra9044.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1218bp|location=Sequence derived from alignment at tig00000176_pilon:27522..30890- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGTCCGCATACGTCTGGCAAGATGGGGTCAAAGACATCGTCCTTT
CTACAGAATTGTCGCGGCAGACGCTCGTGCTAAGCGCGACGGAAGGTTCA
TAGAAGTGGTAGGCACGTACAATCCAATGTCGCACTCACGACTGGAGGCG
GCAAAGAATATCAAGCGAGTGTGTCTTAACGTTGAAAGAATTAAGTACTG
GGTGTCAGTCGGGGCACAACCTACAGATACTGTTGCTAGATTACTGGGTA
CCGCCGGTGTTTTACCCTTTTCTCCGAGGGTTACCGCTGGAAAACGGACA
AACCAAACCACGACTAATATCCAAAAAGCCTTCTCAACCCGGGCGGGTTT
GACTGGTCTGCGAGCATCGCGTACAATGGGAGCAAAGCCAATGCACGCAA
GAAGTGCCCATACGACGCCGGCTGCTGCTAAGGAAGCAAGCATCAGAAAT
TCGGACCCTAATGCAGTAGCGGTCGTTGTAGGGGCAAGCCGAGGAATCGG
ATTGGCAATAACGCAGCAACTAGTTACCAGATGGAAAGGTCGCATTGTTG
CGACATGCCGAGAGCCTGATGAGGCTGGTGCTCTTTCAGCACTTTGGCAA
TTCATGCCAGATCGTTTCAGTGTGATCAGACTAGATGTCGAGGACGAAAA
GTCGATACAAGATGCTGTTCAAAATTTGAAGGAGTGGACTGAAGATTCTC
GAGTAGATTTACTCATGCACACTGCCGGCCTTCTCCATGAAGGGGAAAAC
ATGCCCGAGACATCATTGTACCGTGTGAAAGCAGATTGGCTACAAAAGAA
CCTGGCGATCAATTTGATGGGTCCTGTTCTTGTGGCGAAGCATTTTGCAC
CCTTGATGACCACGGCTCGTAAAAAGGATCGCGTTCCGTCGGTACTAGCC
ACGCTTTCGGCGCGCGTAGGGAGCATCTCCGACAACTCACTGGGAGGGTG
GCTTTCATATCGAGCGTCGAAGGCCGGACAGAACCAGGCCATGAAAACGA
TCAGTATTGAACTTCAAAGGCGTGGCGTGATTTGTGTTGCATTGCATCCG
GGTACTGTCGCGACAGACCTTTCGGCCCCGTTTCAGAAGAATGTGAAACC
AGAAAAGTTGTTTCCAGTCGACGATGCTGCAAACTGGCTGCTGGACGTTG
TGGATTCGTTGGAGATGGAGGATACAGGTGGGTTCTTTGCATACGACGGA
AAGCCTATTCCCTATTAG
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protein sequence of Ggra9044.t1

>Ggra9044.t1 ID=Ggra9044.t1|Name=Ggra9044.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=406bp
MVVRIRLARWGQRHRPFYRIVAADARAKRDGRFIEVVGTYNPMSHSRLEA
AKNIKRVCLNVERIKYWVSVGAQPTDTVARLLGTAGVLPFSPRVTAGKRT
NQTTTNIQKAFSTRAGLTGLRASRTMGAKPMHARSAHTTPAAAKEASIRN
SDPNAVAVVVGASRGIGLAITQQLVTRWKGRIVATCREPDEAGALSALWQ
FMPDRFSVIRLDVEDEKSIQDAVQNLKEWTEDSRVDLLMHTAGLLHEGEN
MPETSLYRVKADWLQKNLAINLMGPVLVAKHFAPLMTTARKKDRVPSVLA
TLSARVGSISDNSLGGWLSYRASKAGQNQAMKTISIELQRRGVICVALHP
GTVATDLSAPFQKNVKPEKLFPVDDAANWLLDVVDSLEMEDTGGFFAYDG
KPIPY*
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mRNA from alignment at tig00000176_pilon:27522..30890-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9044.t1 ID=Ggra9044.t1|Name=Ggra9044.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=3369bp|location=Sequence derived from alignment at tig00000176_pilon:27522..30890- (Gracilaria gracilis GNS1m male)
ATGGTTGTCCGCATACGTCTGGCAAGATGGGGTCAAAGACATCGTCCTTT
CTACAGAATTGTCGCGGCAGACGCTCGTGCTAAGCGCGACGGAAGGTTCA
TAGAAGTGGTAGGCACGTACAATCCAATGTCGCACTCACGACTGGAGGCG
GCAAAGAATATCAAGCGAGTGTGTCTTAACGTTGAAAGAATTAAGTACTG
GGTGTCAGTCGGGGCACAACCTACAGATACTGGTAAGTAACGCATACAAA
TGACCTTAAAAGTGAAGGCCATCTCTGACTTGAGAATCATATAGTTGCTA
GATTACTGGGTACCGCCGGTGTTTTACCCTTTTCTCCGAGGGTTACCGCT
GGAAAACGGACAAACCAAACCACGACTAATATCCAAAAAGCCTTCTCAAC
CCGGGCGGGTTTGACTGGTCTGCGAGCGTTAGTCAAATGAACTGTACATC
TGCGAACTTCAAAAGTCCTACGCTAGTTCAGGCGGACAGAATGACCGAGG
GTTGTTCAGTGTATTGTATACGCCGTCAAAGTATTGAAGCTTCCAATAAC
AATAACTGAATGGCGTTTTGAACCCTTTCACCGTGCAGTTTCGTCACATA
AATAACAAAACGGGCTATTATGACTGCCATGTAGTGAGTCTATGTGCCGC
TGGGAATTACCGCCAAGTACTTTTTTCCATCTCGTTCGTCTATTCGGATA
ACAGCAGTCAAGTCAGCAATCGTCCGTCCACTCATTCGTTCTCGTCTCAA
CATTCGATTCACATCATTCACGAGACTTTCGTCAATCGCACGCCCTTTAT
ATTGGGACAATAATTCCGTTTGGATTGTTGCCAATTCCTTTCTCATTTCT
TCAAAAGCTTGCCCCGTGGCCTTCATTATGGGTGGCACGGATATCTCCTT
TAGATCAGCTTCTGTTAAGAGACCAATCCGTCTTCTGAACGTGTCATTCC
CTAAAGCGTGACGCAGGCCAGTCGTCAACAGCGCATTGCCTGCCCAAAAC
AGCACAAGACCCGAAGGTAGTTGTGTCGTGACCGACAGCGACACAACAGA
AAGCACTTGGAACGAACGTAGAATAAACCTACCAACAGTTATTGGAAGCT
TTTGCACTGGATGAAGTTTCTGAGAAGGAGCGGCTCCGGGTTCCAAGTTC
CACAGCCACAATCCCGCCGTAACCATTGGCAAGGCGCTAATTGGATCTGG
GGCACCCAAGTCAGTAAGCCATGCTAAAGAAGTACCACTCCATCCGTTGT
CAGTTCGAACCGAAAGCTCGCGCATTCCAAGTGAGGCGGAAATGATGAGG
GGTAAATGGGCTGTGAGATGCCATCTGAACTGCTGCCATGACGATGTGCC
AGCTGATCGCATTGCTATTTTGCGGAGACGACGATAAGTATAATACTTCT
GTACAAGGGTTCCAGGAGAATTCCGCACAAAGTGCTGGATGCGAGGATCT
TCTTTCGCTGCAATTCTTGCGCGACCTCGATGAACTTGATTGTGGTACAG
CAGTGGCAGGGATACACCTCGAATTACTAACGAAAGCAAGGGGATTGTCA
GGGACCACGGACAGTCGATCGGGATAGCTTCGTGAAATGCTTGCAGATTG
TCTGCTGCAGCTCTGGAGAATTCGTCTACATTGGACAGAATTGGTGGCGA
TGCTGTTGTAGGCGTCGATGCCGACGTCGACAGATTGCGATTAGAACTCA
AATGAATAAAAGCTCTCAGCGGGGGTCCTCGTAACTCTGTGCGGTGGGCG
CAATAGCCAAACCTATTATAGTAGAAGAGAGAAGACATCGATTTTCCCCA
AAGCAAGCCATTTCTCAAGGCCATTCGGCACAGACGAACGGAAACGATCC
TCGGCGTTTTCTCTGATATAAGGCACCGCAGGCTGACGATCGTTTGCTTT
AGAGGTTTCCCGACTGAAGGGTGGCGCAACTAGAACCGAACTAGTCAGCT
GAGTCGAACCTCCATCTCTTTCTTTTAAACTTATCCTTCTTTCCCCATGG
AAGATCTGTTCAACAGATTCTGTTGTGAAATTTGATCAAGATTTCACAAC
TCCAAAACACGCTCAAGACTGATCATCTCCGAGTGCTCATGTACAACGGT
AACTGTCAACGTACAAACGCCCAAATTTGAGTGCTTCAGGAAATTGAAGG
CGCACAAAGAACCGCATCTCAAGAGACACAACCTGATCGTTGCGGCATCG
GGACACCAGCTGCACGTGACGAAAGCTATCTTCCATCGAAACCAAGGGGG
TCATCTTCATGGCGCTGCTTTCGAATTTGAAACAAGCTGAGGGGTTGATC
TCTCATTCTAGAACACTGCTCTCGTTCTGCCAGCCTCTGGTAAGAAGTAA
TGGATTCGGTAAACTGAGCTCACTGGGCATTTCTCAAACGAGGCAAATCT
CACCCATAAGTTATATCCTCACCAAGCAAAGATCGCGTACAATGGGAGCA
AAGCCAATGCACGCAAGAAGTGCCCATACGACGCCGGCTGCTGCTAAGGA
AGCAAGCATCAGAAATTCGGACCCTAATGCAGTAGCGGTCGTTGTAGGGG
CAAGCCGAGGAATCGGATTGGCAATAACGCAGCAACTAGTTACCAGATGG
AAAGGTCGCATTGTTGCGACATGCCGAGAGCCTGATGAGGCTGGTGCTCT
TTCAGCACTTTGGCAATTCATGCCAGATCGTTTCAGTGTGATCAGACTAG
ATGTCGAGGACGAAAAGTCGGTAAGCTTAAAATGTAACCACTGCTCTTTA
GTAACCTATCACATCAATCGCATGCATCTAACATTGCAACGAACTTGTGA
AATAGATACAAGATGCTGTTCAAAATTTGAAGGAGTGGACTGAAGATTCT
CGAGTAGATTTACTCATGCACACTGCCGGCCTTCTCCATGAAGGGGAAAA
CATGCCCGAGACATCATTGTACCGTGTGAAAGCAGATTGGCTACAAAAGA
ACCTGGCGATCAATTTGATGGGTCCTGTTCTTGTGGCGAAGCATTTTGCA
CCCTTGATGACCACGGCTCGTAAAAAGGATCGCGTTCCGTCGGTACTAGC
CACGCTTTCGGCGCGCGTAGGGAGCATCTCCGACAACTCACTGGGAGGGT
GGCTTTCATATCGAGCGTCGAAGGCCGGACAGAACCAGGCCATGAAAACG
ATCAGTATTGAACTTCAAAGGCGTGGCGTGATTTGTGTTGCATTGCATCC
GGGTACTGTCGCGACAGACCTTTCGGCCCCGTTTCAGAAGAATGTGAAAC
CAGAAAAGTTGTTTCCAGTCGACGATGCTGCAAACTGGCTGCTGGACGTT
GTGGATTCGTTGGAGATGGAGGATACAGGTGGGTTCTTTGCATACGACGG
AAAGCCTATTCCCTATTAG
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Coding sequence (CDS) from alignment at tig00000176_pilon:27522..30890-

>Ggra9044.t1 ID=Ggra9044.t1|Name=Ggra9044.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1218bp|location=Sequence derived from alignment at tig00000176_pilon:27522..30890- (Gracilaria gracilis GNS1m male)
ATGGTTGTCCGCATACGTCTGGCAAGATGGGGTCAAAGACATCGTCCTTT
CTACAGAATTGTCGCGGCAGACGCTCGTGCTAAGCGCGACGGAAGGTTCA
TAGAAGTGGTAGGCACGTACAATCCAATGTCGCACTCACGACTGGAGGCG
GCAAAGAATATCAAGCGAGTGTGTCTTAACGTTGAAAGAATTAAGTACTG
GGTGTCAGTCGGGGCACAACCTACAGATACTGTTGCTAGATTACTGGGTA
CCGCCGGTGTTTTACCCTTTTCTCCGAGGGTTACCGCTGGAAAACGGACA
AACCAAACCACGACTAATATCCAAAAAGCCTTCTCAACCCGGGCGGGTTT
GACTGGTCTGCGAGCATCGCGTACAATGGGAGCAAAGCCAATGCACGCAA
GAAGTGCCCATACGACGCCGGCTGCTGCTAAGGAAGCAAGCATCAGAAAT
TCGGACCCTAATGCAGTAGCGGTCGTTGTAGGGGCAAGCCGAGGAATCGG
ATTGGCAATAACGCAGCAACTAGTTACCAGATGGAAAGGTCGCATTGTTG
CGACATGCCGAGAGCCTGATGAGGCTGGTGCTCTTTCAGCACTTTGGCAA
TTCATGCCAGATCGTTTCAGTGTGATCAGACTAGATGTCGAGGACGAAAA
GTCGATACAAGATGCTGTTCAAAATTTGAAGGAGTGGACTGAAGATTCTC
GAGTAGATTTACTCATGCACACTGCCGGCCTTCTCCATGAAGGGGAAAAC
ATGCCCGAGACATCATTGTACCGTGTGAAAGCAGATTGGCTACAAAAGAA
CCTGGCGATCAATTTGATGGGTCCTGTTCTTGTGGCGAAGCATTTTGCAC
CCTTGATGACCACGGCTCGTAAAAAGGATCGCGTTCCGTCGGTACTAGCC
ACGCTTTCGGCGCGCGTAGGGAGCATCTCCGACAACTCACTGGGAGGGTG
GCTTTCATATCGAGCGTCGAAGGCCGGACAGAACCAGGCCATGAAAACGA
TCAGTATTGAACTTCAAAGGCGTGGCGTGATTTGTGTTGCATTGCATCCG
GGTACTGTCGCGACAGACCTTTCGGCCCCGTTTCAGAAGAATGTGAAACC
AGAAAAGTTGTTTCCAGTCGACGATGCTGCAAACTGGCTGCTGGACGTTG
TGGATTCGTTGGAGATGGAGGATACAGGTGGGTTCTTTGCATACGACGGA
AAGCCTATTCCCTATTAG
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