Ggra9058.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9058.t1
Unique NameGgra9058.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length253
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000176_piloncontigtig00000176_pilon:58311..59224 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog28583.AMAG_07021T0
Max annot lvl2759|Eukaryota
Evalue3.28e-11
EggNOG OGs2E3H1@1|root,2SAJC@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9058Ggra9058Gracilaria gracilis GNS1m malegenetig00000176_pilon 58311..59224 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9058.t1Ggra9058.t1Gracilaria gracilis GNS1m malepolypeptidetig00000176_pilon 58311..59224 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9058.t1.start1Ggra9058.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000176_pilon 58311..58313 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9058.t1.CDS1Ggra9058.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000176_pilon 58311..58412 +
Ggra9058.t1.CDS2Ggra9058.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000176_pilon 58492..58531 +
Ggra9058.t1.CDS3Ggra9058.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000176_pilon 58608..59224 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9058.t1.exon1Ggra9058.t1.exon1Gracilaria gracilis GNS1m maleexontig00000176_pilon 58311..58412 +
Ggra9058.t1.exon2Ggra9058.t1.exon2Gracilaria gracilis GNS1m maleexontig00000176_pilon 58492..58531 +
Ggra9058.t1.exon3Ggra9058.t1.exon3Gracilaria gracilis GNS1m maleexontig00000176_pilon 58608..59224 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9058.t1.intron1Ggra9058.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000176_pilon 58413..58491 +
Ggra9058.t1.intron2Ggra9058.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000176_pilon 58532..58607 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9058.t1.stop1Ggra9058.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000176_pilon 59222..59224 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9058.t1 ID=Ggra9058.t1|Name=Ggra9058.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=253bp
MSSMQYTLVATALIFAHTVLCHSTISGPQPISPGYCRLEDDPKLSCADAG
QRFPIKYHRNNHGPGGFIRVSLVKPEDIMDKAIHERNAFHYSCWGAYTRE
AKPNELSTDKFGFTIVGNDGEKHSAPKAYYIAFITIPSVVPDGKYVLGWV
WYGGTGSNPIQDNKKVEPQPWGYFGDYWACSYVHVKGGLQLSKSYDPVFV
NDMKGFSSEGCMAANDEPGTCSKEPCEVTAFYRKPRPFTKGKKPRPITSK
NF*
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spliced messenger RNA

>Ggra9058.t1 ID=Ggra9058.t1|Name=Ggra9058.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=759bp|location=Sequence derived from alignment at tig00000176_pilon:58311..59224+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCAGTATGCAGTATACTTTGGTGGCTACAGCCTTGATCTTCGCTCA
TACGGTGCTGTGCCACTCCACTATAAGTGGCCCGCAGCCTATTTCTCCAG
GGTATTGCCGGCTCGAAGACGACCCTAAGCTAAGCTGTGCTGACGCGGGC
CAGAGGTTTCCAATCAAATACCACAGAAACAACCATGGTCCCGGTGGCTT
TATCCGAGTCAGTCTCGTGAAACCGGAGGATATTATGGACAAAGCCATTC
ATGAGCGAAACGCATTTCACTACAGCTGTTGGGGTGCATACACGAGGGAG
GCTAAACCGAACGAGCTTTCAACCGATAAGTTTGGTTTCACGATTGTCGG
CAATGACGGTGAGAAACACTCAGCCCCAAAGGCATACTATATTGCATTCA
TAACGATACCCTCAGTTGTTCCTGATGGCAAGTACGTTCTCGGATGGGTT
TGGTATGGCGGTACAGGAAGCAATCCCATTCAAGATAACAAGAAAGTGGA
ACCCCAGCCATGGGGTTATTTCGGTGACTATTGGGCATGTTCGTACGTCC
ATGTCAAAGGCGGCCTCCAGCTCTCCAAATCATATGATCCAGTGTTTGTT
AACGACATGAAGGGCTTTTCTTCTGAGGGTTGCATGGCTGCGAATGATGA
ACCCGGGACTTGCTCCAAGGAACCATGCGAAGTTACTGCTTTCTACCGCA
AGCCGCGACCGTTCACTAAGGGAAAGAAGCCGCGTCCAATAACCTCAAAA
AACTTCTAG
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protein sequence of Ggra9058.t1

>Ggra9058.t1 ID=Ggra9058.t1|Name=Ggra9058.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=253bp
MSSMQYTLVATALIFAHTVLCHSTISGPQPISPGYCRLEDDPKLSCADAG
QRFPIKYHRNNHGPGGFIRVSLVKPEDIMDKAIHERNAFHYSCWGAYTRE
AKPNELSTDKFGFTIVGNDGEKHSAPKAYYIAFITIPSVVPDGKYVLGWV
WYGGTGSNPIQDNKKVEPQPWGYFGDYWACSYVHVKGGLQLSKSYDPVFV
NDMKGFSSEGCMAANDEPGTCSKEPCEVTAFYRKPRPFTKGKKPRPITSK
NF*
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mRNA from alignment at tig00000176_pilon:58311..59224+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9058.t1 ID=Ggra9058.t1|Name=Ggra9058.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=914bp|location=Sequence derived from alignment at tig00000176_pilon:58311..59224+ (Gracilaria gracilis GNS1m male)
ATGAGCAGTATGCAGTATACTTTGGTGGCTACAGCCTTGATCTTCGCTCA
TACGGTGCTGTGCCACTCCACTATAAGTGGCCCGCAGCCTATTTCTCCAG
GGGTAAGTTGTATCGTGATTTGCTTTTCATGTACAAGAGATGGTTGATAT
TAAGCTTGAGTACTAACTTTCTTGGGTACAGTATTGCCGGCTCGAAGACG
ACCCTAAGCTAAGCTGTGCTGGTCCATGCGACTTAAAGGGCGCCGAAGGT
GGCTACTCGAACTTCAACAGTCCTGACAAACCTGCTGCTGTTTATAGACG
CGGGCCAGAGGTTTCCAATCAAATACCACAGAAACAACCATGGTCCCGGT
GGCTTTATCCGAGTCAGTCTCGTGAAACCGGAGGATATTATGGACAAAGC
CATTCATGAGCGAAACGCATTTCACTACAGCTGTTGGGGTGCATACACGA
GGGAGGCTAAACCGAACGAGCTTTCAACCGATAAGTTTGGTTTCACGATT
GTCGGCAATGACGGTGAGAAACACTCAGCCCCAAAGGCATACTATATTGC
ATTCATAACGATACCCTCAGTTGTTCCTGATGGCAAGTACGTTCTCGGAT
GGGTTTGGTATGGCGGTACAGGAAGCAATCCCATTCAAGATAACAAGAAA
GTGGAACCCCAGCCATGGGGTTATTTCGGTGACTATTGGGCATGTTCGTA
CGTCCATGTCAAAGGCGGCCTCCAGCTCTCCAAATCATATGATCCAGTGT
TTGTTAACGACATGAAGGGCTTTTCTTCTGAGGGTTGCATGGCTGCGAAT
GATGAACCCGGGACTTGCTCCAAGGAACCATGCGAAGTTACTGCTTTCTA
CCGCAAGCCGCGACCGTTCACTAAGGGAAAGAAGCCGCGTCCAATAACCT
CAAAAAACTTCTAG
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Coding sequence (CDS) from alignment at tig00000176_pilon:58311..59224+

>Ggra9058.t1 ID=Ggra9058.t1|Name=Ggra9058.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=759bp|location=Sequence derived from alignment at tig00000176_pilon:58311..59224+ (Gracilaria gracilis GNS1m male)
ATGAGCAGTATGCAGTATACTTTGGTGGCTACAGCCTTGATCTTCGCTCA
TACGGTGCTGTGCCACTCCACTATAAGTGGCCCGCAGCCTATTTCTCCAG
GGTATTGCCGGCTCGAAGACGACCCTAAGCTAAGCTGTGCTGACGCGGGC
CAGAGGTTTCCAATCAAATACCACAGAAACAACCATGGTCCCGGTGGCTT
TATCCGAGTCAGTCTCGTGAAACCGGAGGATATTATGGACAAAGCCATTC
ATGAGCGAAACGCATTTCACTACAGCTGTTGGGGTGCATACACGAGGGAG
GCTAAACCGAACGAGCTTTCAACCGATAAGTTTGGTTTCACGATTGTCGG
CAATGACGGTGAGAAACACTCAGCCCCAAAGGCATACTATATTGCATTCA
TAACGATACCCTCAGTTGTTCCTGATGGCAAGTACGTTCTCGGATGGGTT
TGGTATGGCGGTACAGGAAGCAATCCCATTCAAGATAACAAGAAAGTGGA
ACCCCAGCCATGGGGTTATTTCGGTGACTATTGGGCATGTTCGTACGTCC
ATGTCAAAGGCGGCCTCCAGCTCTCCAAATCATATGATCCAGTGTTTGTT
AACGACATGAAGGGCTTTTCTTCTGAGGGTTGCATGGCTGCGAATGATGA
ACCCGGGACTTGCTCCAAGGAACCATGCGAAGTTACTGCTTTCTACCGCA
AGCCGCGACCGTTCACTAAGGGAAAGAAGCCGCGTCCAATAACCTCAAAA
AACTTCTAG
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