Ggra9074.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9074.t1
Unique Name	Ggra9074.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	510

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000176_pilon	contig	tig00000176_pilon:113581..115110 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMI124CT
PFAMs	DUF647
Max annot lvl	2759\|Eukaryota
Evalue	5.35e-169
EggNOG OGs	KOG4249@1\|root,KOG4249@2759\|Eukaryota
Description	response to UV-B
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9074	Ggra9074	Gracilaria gracilis GNS1m male	gene	tig00000176_pilon 113581..115110 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9074.t1.start1	Ggra9074.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000176_pilon 113581..113583 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9074.t1.CDS1	Ggra9074.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000176_pilon 113581..115110 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9074.t1.exon1	Ggra9074.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000176_pilon 113581..115110 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9074.t1.stop1	Ggra9074.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000176_pilon 115108..115110 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9074.t1	Ggra9074.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000176_pilon 113581..115110 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000176_pilon:113581..115110+
coding sequence from alignment at tig00000176_pilon:113581..115110+

mRNA sequence

>Ggra9074.t1 ID=Ggra9074.t1|Name=Ggra9074.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=510bp
MIPLLLSDRPQSQQKWRVSATIAPRNYSCSQSRPNHPRRRSQPAFQFPHK
QRPADPVDKEKLDSESEPVSARAAAVEYVRHSTRQFFVNRGTRHCRGGTL
YREGDTLTVREKAISKTWRGRFVDRLKRLAFPEGYPQSVGPGFVEYTKWR
LSAFFWGGAIGVFSTQGLLLAVGVGRQSAAPLAAALQWVIRDGMGRAGRM
LFSQVGNGFDAETKQYRLMAALVLNLSCALESVTPAIPQLFLPIACVANM
AKGASTVAAASTRSAIYRSFMRTENLGDITAKQETVGVVGDLMGTAVGIL
LSRATAGSRKLSTAIFLSVSVAHMFSAYREIKGIQLASLNRQRAHMLIKY
YLEEGRVPNLILGNRNERIVNRPWLDSLHAPNIDLGARLQECAPDAEALQ
YLIRLYKNERYLFTYENARMKIVLRNDAKSRDCLKAFLQADYFWNRYKQE
GVRESRNRELVEEAYKFANSKFDSFAREARLNGWLTDSVLLRPIGRRASW
NNSSMSLRR*

spliced messenger RNA

>Ggra9074.t1 ID=Ggra9074.t1|Name=Ggra9074.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1530bp|location=Sequence derived from alignment at tig00000176_pilon:113581..115110+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTCCACTCCTTCTTTCAGATCGTCCACAGTCGCAACAAAAATGGCG
TGTATCCGCTACGATTGCCCCGCGCAATTACTCTTGCTCACAATCACGAC
CAAATCACCCGCGTCGACGTTCACAACCAGCGTTCCAATTTCCTCATAAA
CAGCGACCCGCGGACCCAGTCGACAAGGAAAAGTTAGACAGCGAAAGCGA
ACCCGTGTCTGCTCGAGCCGCTGCTGTAGAGTACGTACGACATAGCACGC
GTCAATTCTTTGTAAATCGAGGAACTCGACATTGTCGTGGTGGAACCCTT
TATCGAGAGGGTGACACTCTAACCGTGCGCGAGAAGGCTATTTCAAAAAC
ATGGCGTGGGAGATTTGTTGACCGCCTCAAGCGGCTTGCATTTCCAGAGG
GATATCCTCAAAGTGTTGGACCGGGCTTTGTTGAGTACACCAAGTGGAGA
CTGTCAGCATTTTTCTGGGGCGGTGCTATTGGCGTCTTTTCCACTCAAGG
TCTGCTGCTGGCTGTTGGCGTGGGTAGACAGAGTGCCGCCCCACTTGCAG
CTGCTTTGCAGTGGGTGATTCGAGACGGAATGGGACGCGCGGGACGTATG
TTATTTTCCCAGGTTGGAAATGGGTTCGATGCCGAGACGAAGCAATACAG
GTTGATGGCTGCCCTAGTGTTGAATCTTTCGTGCGCGTTGGAAAGCGTCA
CACCAGCTATTCCACAGTTGTTCCTACCAATTGCATGTGTCGCAAACATG
GCAAAGGGAGCAAGCACTGTTGCAGCAGCCAGCACTCGAAGCGCCATCTA
TCGAAGCTTCATGCGAACGGAAAACTTGGGTGATATCACGGCCAAACAAG
AAACGGTAGGCGTTGTGGGCGATCTCATGGGAACTGCTGTTGGAATTTTA
CTCTCAAGGGCTACCGCAGGAAGTAGAAAACTTTCGACCGCCATCTTTCT
GTCTGTTTCAGTGGCGCACATGTTTTCAGCCTATCGGGAAATCAAAGGTA
TTCAGTTGGCAAGCTTGAATAGGCAGCGAGCCCACATGCTGATCAAATAC
TATCTGGAAGAAGGAAGGGTTCCTAATTTGATATTGGGTAATAGGAATGA
GAGGATTGTGAACAGGCCTTGGCTCGATTCTTTGCATGCTCCAAACATAG
ATCTTGGGGCCCGGCTTCAGGAATGTGCTCCAGATGCAGAGGCTCTGCAA
TATCTAATACGACTTTACAAGAACGAGAGGTATCTATTCACGTACGAGAA
CGCACGAATGAAGATCGTACTTCGGAACGATGCCAAGAGCCGCGACTGTT
TGAAGGCATTTCTTCAAGCGGATTACTTTTGGAATCGATACAAACAGGAG
GGTGTTCGAGAGAGTCGGAATCGTGAGTTAGTGGAAGAAGCTTATAAGTT
TGCAAACTCGAAGTTTGATTCATTTGCTCGTGAAGCGCGTTTGAATGGGT
GGTTGACAGACTCCGTTCTACTTCGACCAATTGGTCGTCGTGCTTCATGG
AACAACTCCTCAATGTCTTTGCGACGGTGA

protein sequence of Ggra9074.t1

>Ggra9074.t1 ID=Ggra9074.t1|Name=Ggra9074.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=510bp
MIPLLLSDRPQSQQKWRVSATIAPRNYSCSQSRPNHPRRRSQPAFQFPHK
QRPADPVDKEKLDSESEPVSARAAAVEYVRHSTRQFFVNRGTRHCRGGTL
YREGDTLTVREKAISKTWRGRFVDRLKRLAFPEGYPQSVGPGFVEYTKWR
LSAFFWGGAIGVFSTQGLLLAVGVGRQSAAPLAAALQWVIRDGMGRAGRM
LFSQVGNGFDAETKQYRLMAALVLNLSCALESVTPAIPQLFLPIACVANM
AKGASTVAAASTRSAIYRSFMRTENLGDITAKQETVGVVGDLMGTAVGIL
LSRATAGSRKLSTAIFLSVSVAHMFSAYREIKGIQLASLNRQRAHMLIKY
YLEEGRVPNLILGNRNERIVNRPWLDSLHAPNIDLGARLQECAPDAEALQ
YLIRLYKNERYLFTYENARMKIVLRNDAKSRDCLKAFLQADYFWNRYKQE
GVRESRNRELVEEAYKFANSKFDSFAREARLNGWLTDSVLLRPIGRRASW
NNSSMSLRR*

mRNA from alignment at tig00000176_pilon:113581..115110+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9074.t1 ID=Ggra9074.t1|Name=Ggra9074.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1530bp|location=Sequence derived from alignment at tig00000176_pilon:113581..115110+ (Gracilaria gracilis GNS1m male)
ATGATTCCACTCCTTCTTTCAGATCGTCCACAGTCGCAACAAAAATGGCG
TGTATCCGCTACGATTGCCCCGCGCAATTACTCTTGCTCACAATCACGAC
CAAATCACCCGCGTCGACGTTCACAACCAGCGTTCCAATTTCCTCATAAA
CAGCGACCCGCGGACCCAGTCGACAAGGAAAAGTTAGACAGCGAAAGCGA
ACCCGTGTCTGCTCGAGCCGCTGCTGTAGAGTACGTACGACATAGCACGC
GTCAATTCTTTGTAAATCGAGGAACTCGACATTGTCGTGGTGGAACCCTT
TATCGAGAGGGTGACACTCTAACCGTGCGCGAGAAGGCTATTTCAAAAAC
ATGGCGTGGGAGATTTGTTGACCGCCTCAAGCGGCTTGCATTTCCAGAGG
GATATCCTCAAAGTGTTGGACCGGGCTTTGTTGAGTACACCAAGTGGAGA
CTGTCAGCATTTTTCTGGGGCGGTGCTATTGGCGTCTTTTCCACTCAAGG
TCTGCTGCTGGCTGTTGGCGTGGGTAGACAGAGTGCCGCCCCACTTGCAG
CTGCTTTGCAGTGGGTGATTCGAGACGGAATGGGACGCGCGGGACGTATG
TTATTTTCCCAGGTTGGAAATGGGTTCGATGCCGAGACGAAGCAATACAG
GTTGATGGCTGCCCTAGTGTTGAATCTTTCGTGCGCGTTGGAAAGCGTCA
CACCAGCTATTCCACAGTTGTTCCTACCAATTGCATGTGTCGCAAACATG
GCAAAGGGAGCAAGCACTGTTGCAGCAGCCAGCACTCGAAGCGCCATCTA
TCGAAGCTTCATGCGAACGGAAAACTTGGGTGATATCACGGCCAAACAAG
AAACGGTAGGCGTTGTGGGCGATCTCATGGGAACTGCTGTTGGAATTTTA
CTCTCAAGGGCTACCGCAGGAAGTAGAAAACTTTCGACCGCCATCTTTCT
GTCTGTTTCAGTGGCGCACATGTTTTCAGCCTATCGGGAAATCAAAGGTA
TTCAGTTGGCAAGCTTGAATAGGCAGCGAGCCCACATGCTGATCAAATAC
TATCTGGAAGAAGGAAGGGTTCCTAATTTGATATTGGGTAATAGGAATGA
GAGGATTGTGAACAGGCCTTGGCTCGATTCTTTGCATGCTCCAAACATAG
ATCTTGGGGCCCGGCTTCAGGAATGTGCTCCAGATGCAGAGGCTCTGCAA
TATCTAATACGACTTTACAAGAACGAGAGGTATCTATTCACGTACGAGAA
CGCACGAATGAAGATCGTACTTCGGAACGATGCCAAGAGCCGCGACTGTT
TGAAGGCATTTCTTCAAGCGGATTACTTTTGGAATCGATACAAACAGGAG
GGTGTTCGAGAGAGTCGGAATCGTGAGTTAGTGGAAGAAGCTTATAAGTT
TGCAAACTCGAAGTTTGATTCATTTGCTCGTGAAGCGCGTTTGAATGGGT
GGTTGACAGACTCCGTTCTACTTCGACCAATTGGTCGTCGTGCTTCATGG
AACAACTCCTCAATGTCTTTGCGACGGTGA

Coding sequence (CDS) from alignment at tig00000176_pilon:113581..115110+

>Ggra9074.t1 ID=Ggra9074.t1|Name=Ggra9074.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1530bp|location=Sequence derived from alignment at tig00000176_pilon:113581..115110+ (Gracilaria gracilis GNS1m male)
ATGATTCCACTCCTTCTTTCAGATCGTCCACAGTCGCAACAAAAATGGCG
TGTATCCGCTACGATTGCCCCGCGCAATTACTCTTGCTCACAATCACGAC
CAAATCACCCGCGTCGACGTTCACAACCAGCGTTCCAATTTCCTCATAAA
CAGCGACCCGCGGACCCAGTCGACAAGGAAAAGTTAGACAGCGAAAGCGA
ACCCGTGTCTGCTCGAGCCGCTGCTGTAGAGTACGTACGACATAGCACGC
GTCAATTCTTTGTAAATCGAGGAACTCGACATTGTCGTGGTGGAACCCTT
TATCGAGAGGGTGACACTCTAACCGTGCGCGAGAAGGCTATTTCAAAAAC
ATGGCGTGGGAGATTTGTTGACCGCCTCAAGCGGCTTGCATTTCCAGAGG
GATATCCTCAAAGTGTTGGACCGGGCTTTGTTGAGTACACCAAGTGGAGA
CTGTCAGCATTTTTCTGGGGCGGTGCTATTGGCGTCTTTTCCACTCAAGG
TCTGCTGCTGGCTGTTGGCGTGGGTAGACAGAGTGCCGCCCCACTTGCAG
CTGCTTTGCAGTGGGTGATTCGAGACGGAATGGGACGCGCGGGACGTATG
TTATTTTCCCAGGTTGGAAATGGGTTCGATGCCGAGACGAAGCAATACAG
GTTGATGGCTGCCCTAGTGTTGAATCTTTCGTGCGCGTTGGAAAGCGTCA
CACCAGCTATTCCACAGTTGTTCCTACCAATTGCATGTGTCGCAAACATG
GCAAAGGGAGCAAGCACTGTTGCAGCAGCCAGCACTCGAAGCGCCATCTA
TCGAAGCTTCATGCGAACGGAAAACTTGGGTGATATCACGGCCAAACAAG
AAACGGTAGGCGTTGTGGGCGATCTCATGGGAACTGCTGTTGGAATTTTA
CTCTCAAGGGCTACCGCAGGAAGTAGAAAACTTTCGACCGCCATCTTTCT
GTCTGTTTCAGTGGCGCACATGTTTTCAGCCTATCGGGAAATCAAAGGTA
TTCAGTTGGCAAGCTTGAATAGGCAGCGAGCCCACATGCTGATCAAATAC
TATCTGGAAGAAGGAAGGGTTCCTAATTTGATATTGGGTAATAGGAATGA
GAGGATTGTGAACAGGCCTTGGCTCGATTCTTTGCATGCTCCAAACATAG
ATCTTGGGGCCCGGCTTCAGGAATGTGCTCCAGATGCAGAGGCTCTGCAA
TATCTAATACGACTTTACAAGAACGAGAGGTATCTATTCACGTACGAGAA
CGCACGAATGAAGATCGTACTTCGGAACGATGCCAAGAGCCGCGACTGTT
TGAAGGCATTTCTTCAAGCGGATTACTTTTGGAATCGATACAAACAGGAG
GGTGTTCGAGAGAGTCGGAATCGTGAGTTAGTGGAAGAAGCTTATAAGTT
TGCAAACTCGAAGTTTGATTCATTTGCTCGTGAAGCGCGTTTGAATGGGT
GGTTGACAGACTCCGTTCTACTTCGACCAATTGGTCGTCGTGCTTCATGG
AACAACTCCTCAATGTCTTTGCGACGGTGA