Ggra9061.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9061.t1
Unique NameGgra9061.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length314
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000176_piloncontigtig00000176_pilon:66405..67425 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog533240.CRC_00003
PFAMsRHS_repeat,VWA
Max annot lvl1117|Cyanobacteria
Evalue1.4e-05
EggNOG OGsCOG1520@1|root,COG2304@1|root,COG2931@1|root,COG5164@1|root,COG1520@2|Bacteria,COG2304@2|Bacteria,COG2931@2|Bacteria,COG5164@2|Bacteria,1GPZZ@1117|Cyanobacteria,1HJUW@1161|Nostocales
DescriptionRepeats in polycystic kidney disease 1 (PKD1) and other proteins
COG categoryM
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9061Ggra9061Gracilaria gracilis GNS1m malegenetig00000176_pilon 66405..67425 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9061.t1Ggra9061.t1Gracilaria gracilis GNS1m malepolypeptidetig00000176_pilon 66405..67425 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9061.t1.CDS1Ggra9061.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000176_pilon 66405..66407 -
Ggra9061.t1.CDS2Ggra9061.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000176_pilon 66487..67425 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9061.t1.exon1Ggra9061.t1.exon1Gracilaria gracilis GNS1m maleexontig00000176_pilon 66405..66407 -
Ggra9061.t1.exon2Ggra9061.t1.exon2Gracilaria gracilis GNS1m maleexontig00000176_pilon 66487..67425 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9061.t1.stop1Ggra9061.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000176_pilon 66405..66407 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9061.t1.intron1Ggra9061.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000176_pilon 66408..66486 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9061.t1.start1Ggra9061.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000176_pilon 67423..67425 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9061.t1 ID=Ggra9061.t1|Name=Ggra9061.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=314bp
MWSPRVGAKSLWMVLVSIVFFTACDCYTEVFSIAKDVEGTSYYVGNIDSN
FFVAKRGADCSFVWTSSAGSATGDDDNDQNREIFYDVLIGSDGLIYAVGT
TKGNFSSPEDEVPTLDAAVVVYDPADGTLVRQAQFDLDNGLDDVARAIVQ
KSDGTLLVAVYGSPPNAQNTAVHATKFLEISPESLELVDRHNVQVQTTGT
FASITGGPTILDIIYVESQEAVVAVGQILGRGMLFMFSLSTGAVVSQTEW
GSIIGNMQIGGLATDHNGTFFVTGSSSENVLQNGDLQSVTTSEFHAYVLR
YDNLLLAAPELTW*
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spliced messenger RNA

>Ggra9061.t1 ID=Ggra9061.t1|Name=Ggra9061.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=942bp|location=Sequence derived from alignment at tig00000176_pilon:66405..67425- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGTCCCCACGCGTGGGTGCGAAAAGCCTTTGGATGGTGCTGGTTTC
CATCGTTTTCTTCACTGCCTGTGATTGTTACACCGAAGTGTTTTCAATTG
CGAAGGACGTGGAGGGCACCAGCTACTACGTTGGGAACATAGACTCGAAC
TTTTTCGTTGCGAAAAGGGGTGCTGACTGCTCGTTCGTCTGGACGAGTTC
AGCTGGATCAGCAACCGGAGATGACGACAATGATCAGAACCGAGAAATCT
TTTACGATGTTCTTATCGGGTCTGATGGTTTAATATACGCTGTGGGCACT
ACGAAAGGGAACTTTTCATCTCCAGAAGATGAAGTGCCCACGTTGGACGC
CGCGGTCGTGGTATATGATCCGGCTGATGGCACGTTGGTGCGCCAGGCTC
AGTTTGACTTGGACAATGGGCTTGACGACGTTGCAAGGGCGATTGTGCAA
AAGTCTGACGGGACGCTCTTGGTTGCTGTGTATGGTTCTCCTCCCAATGC
TCAGAACACGGCGGTCCATGCAACAAAGTTTCTAGAGATATCACCGGAGT
CTCTTGAACTGGTGGACAGGCATAATGTTCAGGTGCAAACCACAGGAACA
TTTGCGTCCATTACGGGCGGACCTACCATCCTGGACATTATATATGTTGA
GAGCCAGGAAGCTGTGGTAGCCGTGGGTCAGATTCTTGGAAGAGGAATGC
TGTTTATGTTCAGCCTTTCGACTGGCGCCGTTGTATCCCAGACTGAATGG
GGGAGCATTATTGGGAATATGCAGATTGGAGGCTTGGCTACTGACCATAA
TGGTACATTCTTTGTGACGGGATCTAGCAGCGAAAATGTTCTTCAAAACG
GAGACTTGCAAAGTGTTACGACATCGGAATTTCATGCGTATGTGCTTCGG
TATGACAATCTTCTGCTGGCCGCACCGGAGCTTACGTGGTGA
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protein sequence of Ggra9061.t1

>Ggra9061.t1 ID=Ggra9061.t1|Name=Ggra9061.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=314bp
MWSPRVGAKSLWMVLVSIVFFTACDCYTEVFSIAKDVEGTSYYVGNIDSN
FFVAKRGADCSFVWTSSAGSATGDDDNDQNREIFYDVLIGSDGLIYAVGT
TKGNFSSPEDEVPTLDAAVVVYDPADGTLVRQAQFDLDNGLDDVARAIVQ
KSDGTLLVAVYGSPPNAQNTAVHATKFLEISPESLELVDRHNVQVQTTGT
FASITGGPTILDIIYVESQEAVVAVGQILGRGMLFMFSLSTGAVVSQTEW
GSIIGNMQIGGLATDHNGTFFVTGSSSENVLQNGDLQSVTTSEFHAYVLR
YDNLLLAAPELTW*
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mRNA from alignment at tig00000176_pilon:66405..67425-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9061.t1 ID=Ggra9061.t1|Name=Ggra9061.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1021bp|location=Sequence derived from alignment at tig00000176_pilon:66405..67425- (Gracilaria gracilis GNS1m male)
ATGTGGTCCCCACGCGTGGGTGCGAAAAGCCTTTGGATGGTGCTGGTTTC
CATCGTTTTCTTCACTGCCTGTGATTGTTACACCGAAGTGTTTTCAATTG
CGAAGGACGTGGAGGGCACCAGCTACTACGTTGGGAACATAGACTCGAAC
TTTTTCGTTGCGAAAAGGGGTGCTGACTGCTCGTTCGTCTGGACGAGTTC
AGCTGGATCAGCAACCGGAGATGACGACAATGATCAGAACCGAGAAATCT
TTTACGATGTTCTTATCGGGTCTGATGGTTTAATATACGCTGTGGGCACT
ACGAAAGGGAACTTTTCATCTCCAGAAGATGAAGTGCCCACGTTGGACGC
CGCGGTCGTGGTATATGATCCGGCTGATGGCACGTTGGTGCGCCAGGCTC
AGTTTGACTTGGACAATGGGCTTGACGACGTTGCAAGGGCGATTGTGCAA
AAGTCTGACGGGACGCTCTTGGTTGCTGTGTATGGTTCTCCTCCCAATGC
TCAGAACACGGCGGTCCATGCAACAAAGTTTCTAGAGATATCACCGGAGT
CTCTTGAACTGGTGGACAGGCATAATGTTCAGGTGCAAACCACAGGAACA
TTTGCGTCCATTACGGGCGGACCTACCATCCTGGACATTATATATGTTGA
GAGCCAGGAAGCTGTGGTAGCCGTGGGTCAGATTCTTGGAAGAGGAATGC
TGTTTATGTTCAGCCTTTCGACTGGCGCCGTTGTATCCCAGACTGAATGG
GGGAGCATTATTGGGAATATGCAGATTGGAGGCTTGGCTACTGACCATAA
TGGTACATTCTTTGTGACGGGATCTAGCAGCGAAAATGTTCTTCAAAACG
GAGACTTGCAAAGTGTTACGACATCGGAATTTCATGCGTATGTGCTTCGG
TATGACAATCTTCTGCTGGCCGCACCGGAGCTTACGTGGGTGAGGCAATT
GGCTGGATCGGGTAGCAGCCAGACTGGAGATGACGTTTCCATAGATCCGA
CTACTGGAGCTGTTGTAGTGA
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Coding sequence (CDS) from alignment at tig00000176_pilon:66405..67425-

>Ggra9061.t1 ID=Ggra9061.t1|Name=Ggra9061.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=942bp|location=Sequence derived from alignment at tig00000176_pilon:66405..67425- (Gracilaria gracilis GNS1m male)
ATGTGGTCCCCACGCGTGGGTGCGAAAAGCCTTTGGATGGTGCTGGTTTC
CATCGTTTTCTTCACTGCCTGTGATTGTTACACCGAAGTGTTTTCAATTG
CGAAGGACGTGGAGGGCACCAGCTACTACGTTGGGAACATAGACTCGAAC
TTTTTCGTTGCGAAAAGGGGTGCTGACTGCTCGTTCGTCTGGACGAGTTC
AGCTGGATCAGCAACCGGAGATGACGACAATGATCAGAACCGAGAAATCT
TTTACGATGTTCTTATCGGGTCTGATGGTTTAATATACGCTGTGGGCACT
ACGAAAGGGAACTTTTCATCTCCAGAAGATGAAGTGCCCACGTTGGACGC
CGCGGTCGTGGTATATGATCCGGCTGATGGCACGTTGGTGCGCCAGGCTC
AGTTTGACTTGGACAATGGGCTTGACGACGTTGCAAGGGCGATTGTGCAA
AAGTCTGACGGGACGCTCTTGGTTGCTGTGTATGGTTCTCCTCCCAATGC
TCAGAACACGGCGGTCCATGCAACAAAGTTTCTAGAGATATCACCGGAGT
CTCTTGAACTGGTGGACAGGCATAATGTTCAGGTGCAAACCACAGGAACA
TTTGCGTCCATTACGGGCGGACCTACCATCCTGGACATTATATATGTTGA
GAGCCAGGAAGCTGTGGTAGCCGTGGGTCAGATTCTTGGAAGAGGAATGC
TGTTTATGTTCAGCCTTTCGACTGGCGCCGTTGTATCCCAGACTGAATGG
GGGAGCATTATTGGGAATATGCAGATTGGAGGCTTGGCTACTGACCATAA
TGGTACATTCTTTGTGACGGGATCTAGCAGCGAAAATGTTCTTCAAAACG
GAGACTTGCAAAGTGTTACGACATCGGAATTTCATGCGTATGTGCTTCGG
TATGACAATCTTCTGCTGGCCGCACCGGAGCTTACGTGGTGA
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