Ggra4052.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4052.t1
Unique NameGgra4052.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length543
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000173_piloncontigtig00000173_pilon:16585..18213 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog67593.Physo141931
PFAMsAsp_protease_2,RVT_1,gag-asp_proteas
Max annot lvl4776|Peronosporales
Evalue6.19e-11
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QH3I@4776|Peronosporales
Descriptiontransposition, RNA-mediated
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4052Ggra4052Gracilaria gracilis GNS1m malegenetig00000173_pilon 16585..18213 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4052.t1.stop1Ggra4052.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000173_pilon 16585..16587 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4052.t1.CDS1Ggra4052.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000173_pilon 16585..18213 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4052.t1.exon1Ggra4052.t1.exon1Gracilaria gracilis GNS1m maleexontig00000173_pilon 16585..18213 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4052.t1.start1Ggra4052.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000173_pilon 18211..18213 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4052.t1Ggra4052.t1Gracilaria gracilis GNS1m malepolypeptidetig00000173_pilon 16585..18213 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4052.t1 ID=Ggra4052.t1|Name=Ggra4052.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=543bp
MAQKEDIPEADTHVQQTTVVRIEAPQLEHVDVASIAQFMRKRKRYEEQVA
EKNKEGLNVNPLSWKMSVTETVMLTMIEGNFINAESIETVTDEMIKTCLQ
KRSKIAKNKIRVDHWDKIIKDVKMDLTIDDAEGRVYNLVVKYRNALRDHG
YSEAITKNPEVAIKHIRERVKPRRLQEHMEGILRIESHAGLHTKDFGAYV
RRLAEEAEEYEYVHRNKNDISNDSIIPITLQPPTSHKRKRDDNVEENCRN
KQRKGAPFCFNKVKCKGKRHYISKCPNSTPEEKEAFLKAFKESRKDRKIL
NSAKKIGDAELSTEDERSSTVFDAFFCGGKLETEVTADQGASANIMPNDL
YLNLRKHDGIKAIHKLARQVSFDVFNKAAPPITCDLKVTADVMLEIRHGK
NMMLRGVDWLIANESTSGVVIGRQLLNALGLNNRVLLDAARSRVGEEIDI
PILYASSKVNMERDQDINKVSMVSNTGVMHGSHDDECDSDDDGIYLDVGE
DSEEAIRSAMDKSLNDAKLQGLSEDGQQFLENCFQKYKKIFD*
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spliced messenger RNA

>Ggra4052.t1 ID=Ggra4052.t1|Name=Ggra4052.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1629bp|location=Sequence derived from alignment at tig00000173_pilon:16585..18213- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACAGAAGGAAGACATTCCCGAAGCGGACACGCATGTTCAACAGAC
AACTGTCGTACGCATTGAAGCCCCGCAATTGGAACACGTTGACGTTGCTT
CGATCGCTCAGTTTATGCGCAAGCGAAAGCGCTATGAGGAGCAAGTTGCC
GAGAAGAATAAGGAAGGTCTTAATGTCAATCCCTTGTCATGGAAAATGAG
TGTCACAGAGACAGTCATGCTGACAATGATCGAAGGCAATTTCATCAATG
CTGAATCTATTGAAACAGTTACAGATGAAATGATCAAGACATGCTTGCAG
AAACGATCAAAAATTGCAAAGAACAAGATTCGAGTAGATCACTGGGATAA
AATAATCAAGGATGTCAAGATGGATCTCACCATCGACGATGCTGAAGGTC
GTGTATACAATCTGGTAGTGAAGTATCGAAATGCGTTACGTGATCACGGA
TATTCCGAAGCTATCACGAAGAACCCAGAGGTGGCCATAAAGCATATTCG
AGAGAGAGTGAAACCCCGTCGCCTACAAGAGCACATGGAGGGCATACTTC
GGATTGAATCTCATGCAGGCCTGCACACAAAAGACTTTGGTGCTTACGTT
AGACGTCTCGCTGAAGAAGCAGAGGAATATGAGTACGTTCATCGCAACAA
GAACGATATTTCAAATGACTCAATAATTCCTATCACTCTGCAGCCGCCTA
CGTCTCACAAGCGTAAGCGAGATGATAATGTTGAAGAAAATTGCCGTAAT
AAGCAGCGAAAAGGGGCACCCTTCTGCTTCAATAAGGTGAAGTGTAAGGG
TAAAAGGCACTACATCAGTAAGTGTCCGAATTCTACACCTGAAGAAAAGG
AAGCCTTTCTCAAAGCTTTCAAAGAGAGTAGAAAAGACAGGAAGATCCTT
AACTCAGCGAAGAAAATAGGTGATGCAGAATTGTCTACTGAGGATGAACG
CTCGTCTACAGTATTTGATGCTTTCTTTTGTGGCGGAAAACTCGAGACAG
AAGTTACTGCAGATCAAGGAGCATCAGCTAACATCATGCCGAATGATTTG
TATTTGAATCTTCGAAAGCATGACGGCATCAAAGCTATTCATAAGTTAGC
ACGTCAAGTTTCGTTTGACGTTTTTAACAAAGCAGCACCGCCAATTACCT
GTGACCTGAAAGTCACAGCAGACGTCATGTTGGAGATCCGACATGGAAAA
AATATGATGTTACGCGGTGTAGATTGGCTGATTGCAAATGAATCAACATC
AGGGGTAGTAATTGGAAGACAGTTACTGAATGCTCTTGGTTTGAATAATC
GTGTCCTTTTGGACGCTGCACGGTCTCGTGTCGGCGAAGAAATAGATATA
CCCATACTGTACGCATCGTCAAAAGTGAACATGGAACGTGACCAAGACAT
CAACAAAGTCTCTATGGTTTCGAACACGGGTGTCATGCATGGCAGCCATG
ACGATGAATGCGACAGTGACGATGACGGGATCTACCTCGACGTCGGTGAA
GACTCTGAAGAAGCAATCAGGAGTGCAATGGACAAATCTCTAAACGATGC
TAAGTTACAAGGTCTTTCAGAAGATGGTCAACAGTTTCTTGAGAATTGTT
TCCAGAAGTATAAGAAGATTTTCGATTAA
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protein sequence of Ggra4052.t1

>Ggra4052.t1 ID=Ggra4052.t1|Name=Ggra4052.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=543bp
MAQKEDIPEADTHVQQTTVVRIEAPQLEHVDVASIAQFMRKRKRYEEQVA
EKNKEGLNVNPLSWKMSVTETVMLTMIEGNFINAESIETVTDEMIKTCLQ
KRSKIAKNKIRVDHWDKIIKDVKMDLTIDDAEGRVYNLVVKYRNALRDHG
YSEAITKNPEVAIKHIRERVKPRRLQEHMEGILRIESHAGLHTKDFGAYV
RRLAEEAEEYEYVHRNKNDISNDSIIPITLQPPTSHKRKRDDNVEENCRN
KQRKGAPFCFNKVKCKGKRHYISKCPNSTPEEKEAFLKAFKESRKDRKIL
NSAKKIGDAELSTEDERSSTVFDAFFCGGKLETEVTADQGASANIMPNDL
YLNLRKHDGIKAIHKLARQVSFDVFNKAAPPITCDLKVTADVMLEIRHGK
NMMLRGVDWLIANESTSGVVIGRQLLNALGLNNRVLLDAARSRVGEEIDI
PILYASSKVNMERDQDINKVSMVSNTGVMHGSHDDECDSDDDGIYLDVGE
DSEEAIRSAMDKSLNDAKLQGLSEDGQQFLENCFQKYKKIFD*
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mRNA from alignment at tig00000173_pilon:16585..18213-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4052.t1 ID=Ggra4052.t1|Name=Ggra4052.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1629bp|location=Sequence derived from alignment at tig00000173_pilon:16585..18213- (Gracilaria gracilis GNS1m male)
ATGGCACAGAAGGAAGACATTCCCGAAGCGGACACGCATGTTCAACAGAC
AACTGTCGTACGCATTGAAGCCCCGCAATTGGAACACGTTGACGTTGCTT
CGATCGCTCAGTTTATGCGCAAGCGAAAGCGCTATGAGGAGCAAGTTGCC
GAGAAGAATAAGGAAGGTCTTAATGTCAATCCCTTGTCATGGAAAATGAG
TGTCACAGAGACAGTCATGCTGACAATGATCGAAGGCAATTTCATCAATG
CTGAATCTATTGAAACAGTTACAGATGAAATGATCAAGACATGCTTGCAG
AAACGATCAAAAATTGCAAAGAACAAGATTCGAGTAGATCACTGGGATAA
AATAATCAAGGATGTCAAGATGGATCTCACCATCGACGATGCTGAAGGTC
GTGTATACAATCTGGTAGTGAAGTATCGAAATGCGTTACGTGATCACGGA
TATTCCGAAGCTATCACGAAGAACCCAGAGGTGGCCATAAAGCATATTCG
AGAGAGAGTGAAACCCCGTCGCCTACAAGAGCACATGGAGGGCATACTTC
GGATTGAATCTCATGCAGGCCTGCACACAAAAGACTTTGGTGCTTACGTT
AGACGTCTCGCTGAAGAAGCAGAGGAATATGAGTACGTTCATCGCAACAA
GAACGATATTTCAAATGACTCAATAATTCCTATCACTCTGCAGCCGCCTA
CGTCTCACAAGCGTAAGCGAGATGATAATGTTGAAGAAAATTGCCGTAAT
AAGCAGCGAAAAGGGGCACCCTTCTGCTTCAATAAGGTGAAGTGTAAGGG
TAAAAGGCACTACATCAGTAAGTGTCCGAATTCTACACCTGAAGAAAAGG
AAGCCTTTCTCAAAGCTTTCAAAGAGAGTAGAAAAGACAGGAAGATCCTT
AACTCAGCGAAGAAAATAGGTGATGCAGAATTGTCTACTGAGGATGAACG
CTCGTCTACAGTATTTGATGCTTTCTTTTGTGGCGGAAAACTCGAGACAG
AAGTTACTGCAGATCAAGGAGCATCAGCTAACATCATGCCGAATGATTTG
TATTTGAATCTTCGAAAGCATGACGGCATCAAAGCTATTCATAAGTTAGC
ACGTCAAGTTTCGTTTGACGTTTTTAACAAAGCAGCACCGCCAATTACCT
GTGACCTGAAAGTCACAGCAGACGTCATGTTGGAGATCCGACATGGAAAA
AATATGATGTTACGCGGTGTAGATTGGCTGATTGCAAATGAATCAACATC
AGGGGTAGTAATTGGAAGACAGTTACTGAATGCTCTTGGTTTGAATAATC
GTGTCCTTTTGGACGCTGCACGGTCTCGTGTCGGCGAAGAAATAGATATA
CCCATACTGTACGCATCGTCAAAAGTGAACATGGAACGTGACCAAGACAT
CAACAAAGTCTCTATGGTTTCGAACACGGGTGTCATGCATGGCAGCCATG
ACGATGAATGCGACAGTGACGATGACGGGATCTACCTCGACGTCGGTGAA
GACTCTGAAGAAGCAATCAGGAGTGCAATGGACAAATCTCTAAACGATGC
TAAGTTACAAGGTCTTTCAGAAGATGGTCAACAGTTTCTTGAGAATTGTT
TCCAGAAGTATAAGAAGATTTTCGATTAA
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Coding sequence (CDS) from alignment at tig00000173_pilon:16585..18213-

>Ggra4052.t1 ID=Ggra4052.t1|Name=Ggra4052.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1629bp|location=Sequence derived from alignment at tig00000173_pilon:16585..18213- (Gracilaria gracilis GNS1m male)
ATGGCACAGAAGGAAGACATTCCCGAAGCGGACACGCATGTTCAACAGAC
AACTGTCGTACGCATTGAAGCCCCGCAATTGGAACACGTTGACGTTGCTT
CGATCGCTCAGTTTATGCGCAAGCGAAAGCGCTATGAGGAGCAAGTTGCC
GAGAAGAATAAGGAAGGTCTTAATGTCAATCCCTTGTCATGGAAAATGAG
TGTCACAGAGACAGTCATGCTGACAATGATCGAAGGCAATTTCATCAATG
CTGAATCTATTGAAACAGTTACAGATGAAATGATCAAGACATGCTTGCAG
AAACGATCAAAAATTGCAAAGAACAAGATTCGAGTAGATCACTGGGATAA
AATAATCAAGGATGTCAAGATGGATCTCACCATCGACGATGCTGAAGGTC
GTGTATACAATCTGGTAGTGAAGTATCGAAATGCGTTACGTGATCACGGA
TATTCCGAAGCTATCACGAAGAACCCAGAGGTGGCCATAAAGCATATTCG
AGAGAGAGTGAAACCCCGTCGCCTACAAGAGCACATGGAGGGCATACTTC
GGATTGAATCTCATGCAGGCCTGCACACAAAAGACTTTGGTGCTTACGTT
AGACGTCTCGCTGAAGAAGCAGAGGAATATGAGTACGTTCATCGCAACAA
GAACGATATTTCAAATGACTCAATAATTCCTATCACTCTGCAGCCGCCTA
CGTCTCACAAGCGTAAGCGAGATGATAATGTTGAAGAAAATTGCCGTAAT
AAGCAGCGAAAAGGGGCACCCTTCTGCTTCAATAAGGTGAAGTGTAAGGG
TAAAAGGCACTACATCAGTAAGTGTCCGAATTCTACACCTGAAGAAAAGG
AAGCCTTTCTCAAAGCTTTCAAAGAGAGTAGAAAAGACAGGAAGATCCTT
AACTCAGCGAAGAAAATAGGTGATGCAGAATTGTCTACTGAGGATGAACG
CTCGTCTACAGTATTTGATGCTTTCTTTTGTGGCGGAAAACTCGAGACAG
AAGTTACTGCAGATCAAGGAGCATCAGCTAACATCATGCCGAATGATTTG
TATTTGAATCTTCGAAAGCATGACGGCATCAAAGCTATTCATAAGTTAGC
ACGTCAAGTTTCGTTTGACGTTTTTAACAAAGCAGCACCGCCAATTACCT
GTGACCTGAAAGTCACAGCAGACGTCATGTTGGAGATCCGACATGGAAAA
AATATGATGTTACGCGGTGTAGATTGGCTGATTGCAAATGAATCAACATC
AGGGGTAGTAATTGGAAGACAGTTACTGAATGCTCTTGGTTTGAATAATC
GTGTCCTTTTGGACGCTGCACGGTCTCGTGTCGGCGAAGAAATAGATATA
CCCATACTGTACGCATCGTCAAAAGTGAACATGGAACGTGACCAAGACAT
CAACAAAGTCTCTATGGTTTCGAACACGGGTGTCATGCATGGCAGCCATG
ACGATGAATGCGACAGTGACGATGACGGGATCTACCTCGACGTCGGTGAA
GACTCTGAAGAAGCAATCAGGAGTGCAATGGACAAATCTCTAAACGATGC
TAAGTTACAAGGTCTTTCAGAAGATGGTCAACAGTTTCTTGAGAATTGTT
TCCAGAAGTATAAGAAGATTTTCGATTAA
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