Ggra5333.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra5333.t1
Unique Name	Ggra5333.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	604

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000172_pilon	contig	tig00000172_pilon:122475..124286 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3218.PP1S271_95V6.1
PFAMs	SRP68
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K03107
KEGG TC	3.A.5.9
KEGG Pathway	ko03060,map03060
Evalue	1.55e-69
EggNOG OGs	KOG2460@1\|root,KOG2460@2759\|Eukaryota,37M17@33090\|Viridiplantae,3GAG7@35493\|Streptophyta
Description	Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane
COG category	U
BRITE	ko00000,ko00001,ko02044

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5333	Ggra5333	Gracilaria gracilis GNS1m male	gene	tig00000172_pilon 122475..124286 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5333.t1.stop1	Ggra5333.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000172_pilon 122475..122477 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5333.t1.CDS1	Ggra5333.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000172_pilon 122475..124286 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5333.t1.exon1	Ggra5333.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000172_pilon 122475..124286 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5333.t1.start1	Ggra5333.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000172_pilon 124284..124286 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5333.t1	Ggra5333.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000172_pilon 122475..124286 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000172_pilon:122475..124286-
coding sequence from alignment at tig00000172_pilon:122475..124286-

mRNA sequence

>Ggra5333.t1 ID=Ggra5333.t1|Name=Ggra5333.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=604bp
MVAAAVSSDETPVASADATSGNGAKQQHPTISLAILSDITAAQNAHGLKH
ADYLRYRRYCTRRISRLRSATSTSNKHPSHHRRYHATPITVDSIRNNERA
LQIPLVLAEREWAFAMDVKREQPAGPHRARRTITAKLSRAVHHAQLLAAL
CHDVADESTVFEAEAYWKSMIAALALEREQWRTALHAYQNVHKIYTGMAG
LLAGTPAAPLFEKRLEDVDQAIRFCNYNLSRSSGQGDDSLLQSLRDDANQ
SQDLLSEKIEAALSQARKRAAVSFGEVTWCGVTVPLRAERVREAVLMASE
ESKLFSQKSAAVEAYDKLFMKYNDAVKVVSDELSQFRLSSAAADDRITEL
EYLVAYLTFNRLQHTISRNLLLVESYKSKRASKPEDFVRLFDNLIANMND
ILALNGVDNDAQVANDAEGRRTLFRAHRCYHLAQCYLAAHMQNEAASLFD
RVAVHTKALTGQYAEEAQKVVKESKGLKCRAVAEAYIKENQLCNNVRDMK
VSEKRAYTGAKRMIDHLDSFECFAPAPDNNRVICDMPPSLEAIACKPVLF
DLAIDGIRFPHEVSKAEPLEAKPEEGTAEAQPTPVSTFAATTTRIGRWWS
GKG*

spliced messenger RNA

>Ggra5333.t1 ID=Ggra5333.t1|Name=Ggra5333.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1812bp|location=Sequence derived from alignment at tig00000172_pilon:122475..124286- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGCCGCCGCAGTCTCGTCGGACGAGACGCCCGTCGCCAGCGCGGA
CGCCACGTCGGGAAACGGCGCAAAGCAGCAGCACCCCACCATCTCGCTCG
CAATCCTGTCGGACATCACCGCCGCCCAGAACGCACACGGTCTCAAGCAC
GCCGACTATCTGCGCTACCGTCGCTACTGCACTCGACGCATCTCCCGTCT
CCGATCCGCCACCAGCACGTCCAACAAGCACCCCTCTCATCACCGTCGCT
ACCATGCCACTCCTATCACCGTCGACAGTATTCGAAACAATGAGCGCGCT
TTGCAGATCCCGCTCGTGTTGGCTGAGCGCGAGTGGGCGTTCGCGATGGA
CGTGAAGAGAGAACAACCTGCAGGACCTCATCGTGCGCGACGTACCATTA
CTGCGAAGCTTTCGCGCGCTGTGCATCATGCGCAGCTTCTTGCTGCCCTT
TGTCACGACGTTGCGGATGAGTCTACCGTGTTCGAGGCCGAGGCGTACTG
GAAATCCATGATCGCCGCGCTGGCGCTGGAGCGCGAGCAATGGCGCACTG
CTTTGCATGCGTACCAAAACGTTCACAAGATCTACACCGGTATGGCGGGC
TTGCTTGCGGGTACGCCTGCTGCGCCCTTGTTTGAGAAGCGATTGGAGGA
TGTTGATCAGGCTATTCGCTTTTGTAACTACAATCTGTCTCGATCCTCCG
GCCAGGGTGACGATAGCTTGTTACAGAGTTTGCGCGATGATGCCAATCAA
TCGCAAGATCTTCTGTCGGAGAAGATCGAAGCTGCGTTATCGCAGGCTCG
TAAACGTGCAGCCGTTTCGTTTGGGGAGGTAACGTGGTGCGGAGTAACTG
TGCCGCTACGCGCCGAGCGTGTTCGGGAGGCGGTGCTTATGGCTTCAGAG
GAAAGCAAGCTCTTTTCTCAGAAATCCGCTGCAGTCGAAGCTTACGACAA
GTTGTTCATGAAGTACAACGACGCCGTCAAAGTTGTTTCCGATGAGCTCT
CGCAATTTCGATTGTCTTCTGCCGCTGCGGATGATCGCATCACGGAGCTT
GAATATCTCGTCGCGTATCTCACGTTTAATCGTCTACAACATACCATATC
TCGAAACCTTCTGCTGGTGGAGTCGTATAAGAGCAAACGTGCGTCTAAAC
CAGAGGATTTTGTGCGCTTATTTGATAACCTTATTGCAAACATGAACGAT
ATTCTGGCGCTCAACGGCGTTGACAACGATGCGCAAGTTGCCAATGATGC
GGAGGGAAGACGCACGTTATTCCGCGCACACAGATGTTACCATTTGGCTC
AGTGCTATCTTGCGGCGCACATGCAAAATGAGGCGGCATCTTTGTTTGAT
CGTGTGGCTGTTCACACCAAGGCGCTCACAGGCCAGTACGCGGAAGAGGC
CCAGAAAGTGGTCAAGGAAAGCAAGGGTCTCAAGTGCAGGGCGGTGGCCG
AGGCGTACATCAAGGAGAATCAACTCTGTAACAACGTGCGAGATATGAAA
GTTTCCGAGAAACGAGCGTATACGGGTGCGAAGCGGATGATCGACCACCT
CGATTCATTTGAATGTTTTGCTCCTGCTCCGGATAATAATCGGGTGATCT
GTGACATGCCTCCGTCGTTGGAAGCCATCGCATGCAAGCCTGTGTTATTT
GACCTTGCGATTGATGGCATTCGATTCCCTCACGAGGTCTCGAAGGCAGA
GCCGCTGGAGGCAAAACCAGAGGAGGGGACAGCTGAGGCGCAACCGACCC
CAGTTTCAACGTTCGCTGCGACGACAACGCGAATAGGACGATGGTGGAGT
GGGAAGGGGTAA

protein sequence of Ggra5333.t1

>Ggra5333.t1 ID=Ggra5333.t1|Name=Ggra5333.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=604bp
MVAAAVSSDETPVASADATSGNGAKQQHPTISLAILSDITAAQNAHGLKH
ADYLRYRRYCTRRISRLRSATSTSNKHPSHHRRYHATPITVDSIRNNERA
LQIPLVLAEREWAFAMDVKREQPAGPHRARRTITAKLSRAVHHAQLLAAL
CHDVADESTVFEAEAYWKSMIAALALEREQWRTALHAYQNVHKIYTGMAG
LLAGTPAAPLFEKRLEDVDQAIRFCNYNLSRSSGQGDDSLLQSLRDDANQ
SQDLLSEKIEAALSQARKRAAVSFGEVTWCGVTVPLRAERVREAVLMASE
ESKLFSQKSAAVEAYDKLFMKYNDAVKVVSDELSQFRLSSAAADDRITEL
EYLVAYLTFNRLQHTISRNLLLVESYKSKRASKPEDFVRLFDNLIANMND
ILALNGVDNDAQVANDAEGRRTLFRAHRCYHLAQCYLAAHMQNEAASLFD
RVAVHTKALTGQYAEEAQKVVKESKGLKCRAVAEAYIKENQLCNNVRDMK
VSEKRAYTGAKRMIDHLDSFECFAPAPDNNRVICDMPPSLEAIACKPVLF
DLAIDGIRFPHEVSKAEPLEAKPEEGTAEAQPTPVSTFAATTTRIGRWWS
GKG*

mRNA from alignment at tig00000172_pilon:122475..124286-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra5333.t1 ID=Ggra5333.t1|Name=Ggra5333.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1812bp|location=Sequence derived from alignment at tig00000172_pilon:122475..124286- (Gracilaria gracilis GNS1m male)
ATGGTGGCCGCCGCAGTCTCGTCGGACGAGACGCCCGTCGCCAGCGCGGA
CGCCACGTCGGGAAACGGCGCAAAGCAGCAGCACCCCACCATCTCGCTCG
CAATCCTGTCGGACATCACCGCCGCCCAGAACGCACACGGTCTCAAGCAC
GCCGACTATCTGCGCTACCGTCGCTACTGCACTCGACGCATCTCCCGTCT
CCGATCCGCCACCAGCACGTCCAACAAGCACCCCTCTCATCACCGTCGCT
ACCATGCCACTCCTATCACCGTCGACAGTATTCGAAACAATGAGCGCGCT
TTGCAGATCCCGCTCGTGTTGGCTGAGCGCGAGTGGGCGTTCGCGATGGA
CGTGAAGAGAGAACAACCTGCAGGACCTCATCGTGCGCGACGTACCATTA
CTGCGAAGCTTTCGCGCGCTGTGCATCATGCGCAGCTTCTTGCTGCCCTT
TGTCACGACGTTGCGGATGAGTCTACCGTGTTCGAGGCCGAGGCGTACTG
GAAATCCATGATCGCCGCGCTGGCGCTGGAGCGCGAGCAATGGCGCACTG
CTTTGCATGCGTACCAAAACGTTCACAAGATCTACACCGGTATGGCGGGC
TTGCTTGCGGGTACGCCTGCTGCGCCCTTGTTTGAGAAGCGATTGGAGGA
TGTTGATCAGGCTATTCGCTTTTGTAACTACAATCTGTCTCGATCCTCCG
GCCAGGGTGACGATAGCTTGTTACAGAGTTTGCGCGATGATGCCAATCAA
TCGCAAGATCTTCTGTCGGAGAAGATCGAAGCTGCGTTATCGCAGGCTCG
TAAACGTGCAGCCGTTTCGTTTGGGGAGGTAACGTGGTGCGGAGTAACTG
TGCCGCTACGCGCCGAGCGTGTTCGGGAGGCGGTGCTTATGGCTTCAGAG
GAAAGCAAGCTCTTTTCTCAGAAATCCGCTGCAGTCGAAGCTTACGACAA
GTTGTTCATGAAGTACAACGACGCCGTCAAAGTTGTTTCCGATGAGCTCT
CGCAATTTCGATTGTCTTCTGCCGCTGCGGATGATCGCATCACGGAGCTT
GAATATCTCGTCGCGTATCTCACGTTTAATCGTCTACAACATACCATATC
TCGAAACCTTCTGCTGGTGGAGTCGTATAAGAGCAAACGTGCGTCTAAAC
CAGAGGATTTTGTGCGCTTATTTGATAACCTTATTGCAAACATGAACGAT
ATTCTGGCGCTCAACGGCGTTGACAACGATGCGCAAGTTGCCAATGATGC
GGAGGGAAGACGCACGTTATTCCGCGCACACAGATGTTACCATTTGGCTC
AGTGCTATCTTGCGGCGCACATGCAAAATGAGGCGGCATCTTTGTTTGAT
CGTGTGGCTGTTCACACCAAGGCGCTCACAGGCCAGTACGCGGAAGAGGC
CCAGAAAGTGGTCAAGGAAAGCAAGGGTCTCAAGTGCAGGGCGGTGGCCG
AGGCGTACATCAAGGAGAATCAACTCTGTAACAACGTGCGAGATATGAAA
GTTTCCGAGAAACGAGCGTATACGGGTGCGAAGCGGATGATCGACCACCT
CGATTCATTTGAATGTTTTGCTCCTGCTCCGGATAATAATCGGGTGATCT
GTGACATGCCTCCGTCGTTGGAAGCCATCGCATGCAAGCCTGTGTTATTT
GACCTTGCGATTGATGGCATTCGATTCCCTCACGAGGTCTCGAAGGCAGA
GCCGCTGGAGGCAAAACCAGAGGAGGGGACAGCTGAGGCGCAACCGACCC
CAGTTTCAACGTTCGCTGCGACGACAACGCGAATAGGACGATGGTGGAGT
GGGAAGGGGTAA

Coding sequence (CDS) from alignment at tig00000172_pilon:122475..124286-

>Ggra5333.t1 ID=Ggra5333.t1|Name=Ggra5333.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1812bp|location=Sequence derived from alignment at tig00000172_pilon:122475..124286- (Gracilaria gracilis GNS1m male)
ATGGTGGCCGCCGCAGTCTCGTCGGACGAGACGCCCGTCGCCAGCGCGGA
CGCCACGTCGGGAAACGGCGCAAAGCAGCAGCACCCCACCATCTCGCTCG
CAATCCTGTCGGACATCACCGCCGCCCAGAACGCACACGGTCTCAAGCAC
GCCGACTATCTGCGCTACCGTCGCTACTGCACTCGACGCATCTCCCGTCT
CCGATCCGCCACCAGCACGTCCAACAAGCACCCCTCTCATCACCGTCGCT
ACCATGCCACTCCTATCACCGTCGACAGTATTCGAAACAATGAGCGCGCT
TTGCAGATCCCGCTCGTGTTGGCTGAGCGCGAGTGGGCGTTCGCGATGGA
CGTGAAGAGAGAACAACCTGCAGGACCTCATCGTGCGCGACGTACCATTA
CTGCGAAGCTTTCGCGCGCTGTGCATCATGCGCAGCTTCTTGCTGCCCTT
TGTCACGACGTTGCGGATGAGTCTACCGTGTTCGAGGCCGAGGCGTACTG
GAAATCCATGATCGCCGCGCTGGCGCTGGAGCGCGAGCAATGGCGCACTG
CTTTGCATGCGTACCAAAACGTTCACAAGATCTACACCGGTATGGCGGGC
TTGCTTGCGGGTACGCCTGCTGCGCCCTTGTTTGAGAAGCGATTGGAGGA
TGTTGATCAGGCTATTCGCTTTTGTAACTACAATCTGTCTCGATCCTCCG
GCCAGGGTGACGATAGCTTGTTACAGAGTTTGCGCGATGATGCCAATCAA
TCGCAAGATCTTCTGTCGGAGAAGATCGAAGCTGCGTTATCGCAGGCTCG
TAAACGTGCAGCCGTTTCGTTTGGGGAGGTAACGTGGTGCGGAGTAACTG
TGCCGCTACGCGCCGAGCGTGTTCGGGAGGCGGTGCTTATGGCTTCAGAG
GAAAGCAAGCTCTTTTCTCAGAAATCCGCTGCAGTCGAAGCTTACGACAA
GTTGTTCATGAAGTACAACGACGCCGTCAAAGTTGTTTCCGATGAGCTCT
CGCAATTTCGATTGTCTTCTGCCGCTGCGGATGATCGCATCACGGAGCTT
GAATATCTCGTCGCGTATCTCACGTTTAATCGTCTACAACATACCATATC
TCGAAACCTTCTGCTGGTGGAGTCGTATAAGAGCAAACGTGCGTCTAAAC
CAGAGGATTTTGTGCGCTTATTTGATAACCTTATTGCAAACATGAACGAT
ATTCTGGCGCTCAACGGCGTTGACAACGATGCGCAAGTTGCCAATGATGC
GGAGGGAAGACGCACGTTATTCCGCGCACACAGATGTTACCATTTGGCTC
AGTGCTATCTTGCGGCGCACATGCAAAATGAGGCGGCATCTTTGTTTGAT
CGTGTGGCTGTTCACACCAAGGCGCTCACAGGCCAGTACGCGGAAGAGGC
CCAGAAAGTGGTCAAGGAAAGCAAGGGTCTCAAGTGCAGGGCGGTGGCCG
AGGCGTACATCAAGGAGAATCAACTCTGTAACAACGTGCGAGATATGAAA
GTTTCCGAGAAACGAGCGTATACGGGTGCGAAGCGGATGATCGACCACCT
CGATTCATTTGAATGTTTTGCTCCTGCTCCGGATAATAATCGGGTGATCT
GTGACATGCCTCCGTCGTTGGAAGCCATCGCATGCAAGCCTGTGTTATTT
GACCTTGCGATTGATGGCATTCGATTCCCTCACGAGGTCTCGAAGGCAGA
GCCGCTGGAGGCAAAACCAGAGGAGGGGACAGCTGAGGCGCAACCGACCC
CAGTTTCAACGTTCGCTGCGACGACAACGCGAATAGGACGATGGTGGAGT
GGGAAGGGGTAA