Ggra9861.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9861.t1
Unique NameGgra9861.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length305
Homology
BLAST of Ggra9861.t1 vs. uniprot
Match: A0A2V3J5G9 (Cyclin-U4-1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5G9_9FLOR)

HSP 1 Score: 245 bits (625), Expect = 8.090e-77
Identity = 137/231 (59.31%), Postives = 165/231 (71.43%), Query Frame = 0
Query:   83 PRLTDCELLISVLESYMTLHIRRNDA-AHP--CERTSPTVRHPAPQRLPASQRAAEPSVFHALQPPSITPVEYLRRLARYAFCSRSAFILAFYYLQTIANLQPTCLTINSLSIHRLLLTATLLATKMVDDILYDNAHFAKVGGLDLKELNMLELQMLTVLRYQLCVSAEQYEAFERSVLNDVFACEDSQFSMLHERLRNMGYSLDEQ------------LPPCSPVSSLDD 298
            PRL+ C+LLISVL+ YMTLHIR N A A P  C + S +              A+EPSVFHALQ PSITP EYLRRL+RYAFCSRS FI+AFYYL  IA  +   L +N+LS+HRLLLTATLLATKM+DD+LYDNAHFAKVGGLD+ ELNML   ML +L+++L VS +Q+E FE+ VL  V  C DS + +LHERLRNMGY++  +            LPPCSPVSS+DD
Sbjct:   61 PRLSSCDLLISVLDCYMTLHIRANSATATPQLCNQPSSSX-----XXXXXXXPASEPSVFHALQAPSITPSEYLRRLSRYAFCSRSVFIVAFYYLHKIAQKRSLNLCVNALSVHRLLLTATLLATKMMDDVLYDNAHFAKVGGLDVAELNMLXXXMLHMLQFELVVSTDQFERFEKRVLTHVLHCHDSSYFVLHERLRNMGYAVSAEPQQKVHQQRVHSLPPCSPVSSIDD 286          
BLAST of Ggra9861.t1 vs. uniprot
Match: A0A7S1EV37 (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1EV37_9RHOD)

HSP 1 Score: 129 bits (325), Expect = 3.750e-32
Identity = 66/141 (46.81%), Postives = 100/141 (70.92%), Query Frame = 0
Query:  137 SVFHALQPPSITPVEYLRRLARYAFCSRSAFILAFYYLQTIANLQPTCLTINSLSIHRLLLTATLLATKMVDDILYDNAHFAKVGGLDLKELNMLELQMLTVLRYQLCVSAEQYEAFERSVLNDV-----FACEDSQFSML 272
            S FH L+PP ++  +YL+R+ RY+FCSRS  ILA Y++  ++  + +C  I +L++HRL +TA LLA K  +D+LYDN HF+KVGG+ L+ELN++EL+ML  L Y+L VS + Y  FERS+L++V     ++C + Q  +L
Sbjct:   48 SEFHGLEPPRVSLHDYLQRIDRYSFCSRSCHILALYFVDRLSK-RSSCFRITALNVHRLYITAFLLAVKSSEDVLYDNLHFSKVGGIYLRELNLMELKMLEELNYELFVSPDSYREFERSILDEVVKSSDYSCIEPQLLLL 187          
BLAST of Ggra9861.t1 vs. uniprot
Match: A0A5J4Z087 (Cyclin-U4-1 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z087_PORPP)

HSP 1 Score: 114 bits (286), Expect = 1.240e-26
Identity = 59/137 (43.07%), Postives = 93/137 (67.88%), Query Frame = 0
Query:  125 QRLPASQRAAEPSVFHALQPPSITPVEYLRRLARYAFCSRSAFILAFYYLQTIANLQPTCLTINSLSIHRLLLTATLLATKMVDDILYDNAHFAKVGGLDLKELNMLELQMLTVLRYQLCVSAEQYEAFERSVLNDV 261
            + +PA ++ +  S FH L+ P +  ++YL R+ +YAFCSRS F++A  YL  IA +  T   + + ++HRL LTA +LA K  +D+ YDNAHFAKVGG+ ++ELN +EL+ L  L +++ VS +Q+ A  RS++ +V
Sbjct:   53 ENIPALKKCS--SEFHGLEVPKVLLLDYLHRIEKYAFCSRSCFVVALVYLDWIAMVDCTY-RLTAFNVHRLFLTALVLAVKFCEDVFYDNAHFAKVGGITVQELNRMELEFLKALEFRMHVSEDQFAACARSMIEEV 186          
BLAST of Ggra9861.t1 vs. uniprot
Match: A0A7J7IFG4 (Mitochondrial peripheral inner membrane protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IFG4_9RHOD)

HSP 1 Score: 111 bits (278), Expect = 1.980e-24
Identity = 69/164 (42.07%), Postives = 103/164 (62.80%), Query Frame = 0
Query:  137 SVFHALQPPSITPVEYLRRLARYAFCSRSAFILAFYYLQTIANLQPTCLTINSLSIHRLLLTATLLATKMVDDILYDNAHFAKVGGLDLKELNMLELQMLTVLRYQLCVSAEQYEAFERSVL-NDVFACEDSQFSMLHERLRNMGYSLDEQL--PPC--SPVSS 295
            S FHA + P+I+   Y  R+  +AFCS++ +++A  YL  ++  +   L + S + HRL++TA +LA K  DDI Y+NA++AKVGGL L+E+N LE++ML  L YQL VS E++ AFER +L   + A  D     L +RL + G+ L   L  P C  SP+S+
Sbjct:  190 SPFHASRIPNISVEAYFERIYTFAFCSKACYVIALLYLDRLSR-RNASLRMTSFTAHRLIITAVMLAAKFFDDIFYNNAYYAKVGGLPLREMNALEVRMLRELAYQLNVSLEEFHAFERVLLCKAIRAAPD-----LGKRLEDSGFPLQRSLWRPICNASPLSA 347          
BLAST of Ggra9861.t1 vs. uniprot
Match: A0A6A7G3I6 (Cyclin-dependent protein (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7G3I6_9CRUS)

HSP 1 Score: 106 bits (264), Expect = 2.850e-24
Identity = 53/129 (41.09%), Postives = 87/129 (67.44%), Query Frame = 0
Query:  126 RLPASQRAAEPSVFHALQPPSITPVEYLRRLARYAFCSRSAFILAFYYLQTIANLQPTCLTINSLSIHRLLLTATLLATKMVDDILYDNAHFAKVGGLDLKELNMLELQMLTVLRYQLCVSAEQYEAFE 254
            R+P  +++   S FHAL+PP+I   +YL R+A+Y+ CS   F+L+  Y+  I    P  L +NSL++HRLL+T+ +LA K  DD  Y+NA++ KVGG+  +E+N LE++ L ++ + L VS +QY+ ++
Sbjct:   33 RIPLEKKSI--SKFHALRPPAIAVADYLERIAKYSACSSECFVLSLIYIDRIIQDNPFFL-VNSLNVHRLLITSVMLAAKFFDDHYYNNAYYGKVGGVPCQEINSLEIEFLFMINFNLFVSTDQYDQYQ 158          
BLAST of Ggra9861.t1 vs. uniprot
Match: A0A6J0JM60 (Cyclin n=1 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0JM60_RAPSA)

HSP 1 Score: 106 bits (265), Expect = 3.230e-24
Identity = 59/129 (45.74%), Postives = 87/129 (67.44%), Query Frame = 0
Query:  125 QRLPASQRAAEPSVFHALQPPSITPVEYLRRLARYAFCSRSAFILAFYYLQTIANLQPTCLTINSLSIHRLLLTATLLATKMVDDILYDNAHFAKVGGLDLKELNMLELQMLTVLRYQLCVSAEQYEAF 253
            QR  A+Q +   SVFH L  PSIT   YL R+ +YA CSRS F++A+ YL    + QP+ L INSL++HRLL+T+ +++ K +DD  Y+NA++AKVGG+  KE+N+LEL  L  L + L V+   + ++
Sbjct:   31 QRQVATQ-SQRVSVFHGLSLPSITIQSYLERIFKYAHCSRSCFVVAYVYLDRFTHRQPS-LPINSLNVHRLLITSVMVSAKFLDDRYYNNAYYAKVGGISTKEMNLLELDFLFGLGFDLNVTPNTFHSY 157          
BLAST of Ggra9861.t1 vs. uniprot
Match: A0A0D3B6R2 (Cyclin n=4 Tax=Brassica TaxID=3705 RepID=A0A0D3B6R2_BRAOL)

HSP 1 Score: 105 bits (262), Expect = 8.820e-24
Identity = 55/117 (47.01%), Postives = 79/117 (67.52%), Query Frame = 0
Query:  137 SVFHALQPPSITPVEYLRRLARYAFCSRSAFILAFYYLQTIANLQPTCLTINSLSIHRLLLTATLLATKMVDDILYDNAHFAKVGGLDLKELNMLELQMLTVLRYQLCVSAEQYEAF 253
            SVFH L  PSIT   YL R+ +YA CS S F++A+ YL    + QP+ L INS ++HRLL+T+ + A K +DD+ Y+NA++AKVGG+  KE+N+LEL  L  L + L V+   + A+
Sbjct:   42 SVFHGLSRPSITIQSYLERIYKYANCSSSCFVVAYVYLDRFTHRQPS-LPINSFNVHRLLITSVMTAAKFLDDLYYNNAYYAKVGGISTKEMNLLELDFLFGLGFDLNVTPNTFHAY 157          
BLAST of Ggra9861.t1 vs. uniprot
Match: A0A087H575 (Cyclin n=1 Tax=Arabis alpina TaxID=50452 RepID=A0A087H575_ARAAL)

HSP 1 Score: 105 bits (261), Expect = 1.330e-23
Identity = 57/140 (40.71%), Postives = 88/140 (62.86%), Query Frame = 0
Query:  137 SVFHALQPPSITPVEYLRRLARYAFCSRSAFILAFYYLQTIANLQPTCLTINSLSIHRLLLTATLLATKMVDDILYDNAHFAKVGGLDLKELNMLELQMLTVLRYQLCVSAEQYEAFERSVLNDVFACEDSQFSMLHERL 276
            SVFH L  P+IT   YL R+ +YA CS S F++A+ YL    + QP+ L INS ++HRLL+T+ +++ K +DD+ Y+NA++AKVGG+  KE+N+LEL  L  L + L V    ++A+        F     + ++LH+ L
Sbjct:   42 SVFHGLSRPTITIQSYLERIYKYANCSPSCFVVAYVYLDRFTHRQPS-LPINSFNVHRLLITSVMVSAKFLDDLYYNNAYYAKVGGISTKEMNLLELDFLFGLGFDLNVKPNTFQAY--------FTYLQKEMNLLHQPL 172          
BLAST of Ggra9861.t1 vs. uniprot
Match: A0A7S0J7V7 (Cyclin n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J7V7_9EUKA)

HSP 1 Score: 105 bits (261), Expect = 1.360e-23
Identity = 66/206 (32.04%), Postives = 111/206 (53.88%), Query Frame = 0
Query:   89 ELLISVLESYMTLHIRRNDAAHPCERTSPTVRHPAPQRLPASQRAAEPSVFHALQPPSITPVEYLR-RLARYAFCSRSAFILAFYYLQTIANLQPTCLTINSLSIHRLLLTATLLATKMVDDILYDNAHFAKVGGLDLKELNMLELQMLTVLRYQLCVSAEQYEAFERSVLNDVFACEDSQFSMLHERLRNMGYSLDEQLPPCSPV 293
            +L+++V+   +T  + RND                  +LP       P  FH+ +PP+I+   YL  R+ +YA CS   FILA  Y+  +    P    I+SL++HRLL+T+ +LA+K  DD+ Y+NA++A+VGG+   E+N LE++ML ++ + L V  +QYE +  S+ + +   +D+   M+ +          +QLP C P 
Sbjct:   13 DLIVTVISKLLTELVARND------------------QLPLVPTQVTP--FHSSKPPTISVKSYLEDRILKYAGCSEETFILALIYMDQVVQFNPD-FVISSLNVHRLLITSVMLASKFFDDVYYNNAYYARVGGISNAEVNSLEMEMLRMISFSLFVQPDQYEKYRGSLYSHLAPRQDTSLPMVAQ----------QQLP-CQPA 186          
BLAST of Ggra9861.t1 vs. uniprot
Match: CCU41 (Cyclin-U4-1 n=25 Tax=Brassicaceae TaxID=3700 RepID=CCU41_ARATH)

HSP 1 Score: 104 bits (260), Expect = 1.900e-23
Identity = 54/117 (46.15%), Postives = 80/117 (68.38%), Query Frame = 0
Query:  137 SVFHALQPPSITPVEYLRRLARYAFCSRSAFILAFYYLQTIANLQPTCLTINSLSIHRLLLTATLLATKMVDDILYDNAHFAKVGGLDLKELNMLELQMLTVLRYQLCVSAEQYEAF 253
            SVFH L  P+IT   YL R+ +YA CS S F++A+ YL    + QP+ L INS ++HRLL+T+ ++A K +DD+ Y+NA++AKVGG+  KE+N LEL  L  L ++L V+   + A+
Sbjct:   42 SVFHGLSRPTITIQSYLERIFKYANCSPSCFVVAYVYLDRFTHRQPS-LPINSFNVHRLLITSVMVAAKFLDDLYYNNAYYAKVGGISTKEMNFLELDFLFGLGFELNVTPNTFNAY 157          
The following BLAST results are available for this feature:
BLAST of Ggra9861.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J5G98.090e-7759.31Cyclin-U4-1 n=1 Tax=Gracilariopsis chorda TaxID=44... [more]
A0A7S1EV373.750e-3246.81Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A5J4Z0871.240e-2643.07Cyclin-U4-1 n=1 Tax=Porphyridium purpureum TaxID=3... [more]
A0A7J7IFG41.980e-2442.07Mitochondrial peripheral inner membrane protein n=... [more]
A0A6A7G3I62.850e-2441.09Cyclin-dependent protein (Fragment) n=1 Tax=Hirond... [more]
A0A6J0JM603.230e-2445.74Cyclin n=1 Tax=Raphanus sativus TaxID=3726 RepID=A... [more]
A0A0D3B6R28.820e-2447.01Cyclin n=4 Tax=Brassica TaxID=3705 RepID=A0A0D3B6R... [more]
A0A087H5751.330e-2340.71Cyclin n=1 Tax=Arabis alpina TaxID=50452 RepID=A0A... [more]
A0A7S0J7V71.360e-2332.04Cyclin n=1 Tax=Calcidiscus leptoporus TaxID=127549... [more]
CCU411.900e-2346.15Cyclin-U4-1 n=25 Tax=Brassicaceae TaxID=3700 RepID... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.472.10coord: 85..285
e-value: 3.8E-41
score: 143.0
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..155
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 156..174
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 175..304
IPR013922Cyclin PHO80-likePFAMPF08613Cyclincoord: 130..243
e-value: 1.3E-28
score: 100.4
IPR013922Cyclin PHO80-likePANTHERPTHR15615UNCHARACTERIZEDcoord: 90..259
IPR036915Cyclin-like superfamilySUPERFAMILY47954Cyclin-likecoord: 150..243

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000170_piloncontigtig00000170_pilon:152189..153103 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9861.t1Ggra9861.t1Gracilaria gracilis GNS1m malemRNAtig00000170_pilon 152189..153103 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9861.t1 ID=Ggra9861.t1|Name=Ggra9861.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=305bp
MLPPRSLHEKALLRRASRALTVRNHSQAATPTATVLEQPRSTVLYTAGRK
QPRGCGHAPSKLVACSQSVLPPSSPVDRPRLQPRLTDCELLISVLESYMT
LHIRRNDAAHPCERTSPTVRHPAPQRLPASQRAAEPSVFHALQPPSITPV
EYLRRLARYAFCSRSAFILAFYYLQTIANLQPTCLTINSLSIHRLLLTAT
LLATKMVDDILYDNAHFAKVGGLDLKELNMLELQMLTVLRYQLCVSAEQY
EAFERSVLNDVFACEDSQFSMLHERLRNMGYSLDEQLPPCSPVSSLDDFG
ASDA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013922Cyclin_PHO80-like
IPR036915Cyclin-like_sf