Ggra9861.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9861.t1
Unique Name	Ggra9861.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	305

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000170_pilon	contig	tig00000170_pilon:152189..153103 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3711.Bra000361.1-P
PFAMs	Cyclin
Max annot lvl	35493\|Streptophyta
Evalue	7.56e-26
EggNOG OGs	KOG1674@1\|root,KOG1674@2759\|Eukaryota,37S1J@33090\|Viridiplantae,3GAQ0@35493\|Streptophyta,3HTTV@3699\|Brassicales
Description	Cyclin
COG category	D

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9861	Ggra9861	Gracilaria gracilis GNS1m male	gene	tig00000170_pilon 152189..153103 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9861.t1.start1	Ggra9861.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000170_pilon 152189..152191 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9861.t1.CDS1	Ggra9861.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000170_pilon 152189..153103 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9861.t1.exon1	Ggra9861.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000170_pilon 152189..153103 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9861.t1.stop1	Ggra9861.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000170_pilon 153101..153103 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9861.t1	Ggra9861.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000170_pilon 152189..153103 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000170_pilon:152189..153103+
coding sequence from alignment at tig00000170_pilon:152189..153103+

mRNA sequence

>Ggra9861.t1 ID=Ggra9861.t1|Name=Ggra9861.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=305bp
MLPPRSLHEKALLRRASRALTVRNHSQAATPTATVLEQPRSTVLYTAGRK
QPRGCGHAPSKLVACSQSVLPPSSPVDRPRLQPRLTDCELLISVLESYMT
LHIRRNDAAHPCERTSPTVRHPAPQRLPASQRAAEPSVFHALQPPSITPV
EYLRRLARYAFCSRSAFILAFYYLQTIANLQPTCLTINSLSIHRLLLTAT
LLATKMVDDILYDNAHFAKVGGLDLKELNMLELQMLTVLRYQLCVSAEQY
EAFERSVLNDVFACEDSQFSMLHERLRNMGYSLDEQLPPCSPVSSLDDFG
ASDA*

spliced messenger RNA

>Ggra9861.t1 ID=Ggra9861.t1|Name=Ggra9861.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=915bp|location=Sequence derived from alignment at tig00000170_pilon:152189..153103+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTCCGCCGCGCTCGCTTCACGAAAAGGCGCTTCTGCGTCGCGCGTC
GCGCGCGCTCACAGTGCGCAATCATTCGCAGGCCGCCACGCCCACGGCTA
CCGTGCTCGAGCAGCCGCGCTCCACCGTGCTGTACACCGCAGGTCGCAAG
CAGCCGCGCGGCTGCGGCCACGCGCCGTCCAAGCTGGTGGCGTGCAGCCA
GTCCGTGCTGCCGCCTTCGTCTCCGGTTGATCGACCGCGCCTTCAACCGC
GCCTCACCGACTGCGAGCTGCTCATCAGCGTGTTGGAAAGCTACATGACG
CTGCATATTCGTCGCAACGACGCTGCGCACCCATGTGAACGCACGTCACC
CACCGTCAGACACCCCGCGCCGCAGCGCCTGCCCGCGTCGCAACGTGCCG
CCGAACCGTCCGTGTTTCATGCGTTGCAGCCGCCGTCCATCACGCCGGTG
GAGTATCTTCGTCGTCTGGCTCGCTATGCGTTCTGTTCGCGTTCTGCTTT
CATCCTCGCCTTCTACTACCTGCAGACGATTGCCAATCTGCAGCCGACCT
GTCTCACCATCAACTCGCTCAGCATCCACCGCTTGCTGCTCACGGCCACG
CTGCTGGCCACCAAGATGGTGGACGACATTCTGTACGACAACGCCCACTT
TGCCAAAGTTGGCGGCCTGGACCTCAAGGAACTCAACATGCTGGAGCTGC
AAATGCTCACCGTCTTGCGCTACCAGCTCTGCGTCAGTGCCGAGCAGTAC
GAGGCCTTTGAACGCTCCGTGCTCAACGACGTCTTTGCGTGCGAGGACTC
GCAGTTCTCCATGCTACACGAGCGGCTGCGAAACATGGGCTACTCGCTCG
ATGAACAACTGCCGCCCTGTTCGCCTGTGTCGTCGCTGGATGACTTTGGC
GCCTCCGACGCGTAA

protein sequence of Ggra9861.t1

>Ggra9861.t1 ID=Ggra9861.t1|Name=Ggra9861.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=305bp
MLPPRSLHEKALLRRASRALTVRNHSQAATPTATVLEQPRSTVLYTAGRK
QPRGCGHAPSKLVACSQSVLPPSSPVDRPRLQPRLTDCELLISVLESYMT
LHIRRNDAAHPCERTSPTVRHPAPQRLPASQRAAEPSVFHALQPPSITPV
EYLRRLARYAFCSRSAFILAFYYLQTIANLQPTCLTINSLSIHRLLLTAT
LLATKMVDDILYDNAHFAKVGGLDLKELNMLELQMLTVLRYQLCVSAEQY
EAFERSVLNDVFACEDSQFSMLHERLRNMGYSLDEQLPPCSPVSSLDDFG
ASDA*

mRNA from alignment at tig00000170_pilon:152189..153103+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9861.t1 ID=Ggra9861.t1|Name=Ggra9861.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=915bp|location=Sequence derived from alignment at tig00000170_pilon:152189..153103+ (Gracilaria gracilis GNS1m male)
ATGCTTCCGCCGCGCTCGCTTCACGAAAAGGCGCTTCTGCGTCGCGCGTC
GCGCGCGCTCACAGTGCGCAATCATTCGCAGGCCGCCACGCCCACGGCTA
CCGTGCTCGAGCAGCCGCGCTCCACCGTGCTGTACACCGCAGGTCGCAAG
CAGCCGCGCGGCTGCGGCCACGCGCCGTCCAAGCTGGTGGCGTGCAGCCA
GTCCGTGCTGCCGCCTTCGTCTCCGGTTGATCGACCGCGCCTTCAACCGC
GCCTCACCGACTGCGAGCTGCTCATCAGCGTGTTGGAAAGCTACATGACG
CTGCATATTCGTCGCAACGACGCTGCGCACCCATGTGAACGCACGTCACC
CACCGTCAGACACCCCGCGCCGCAGCGCCTGCCCGCGTCGCAACGTGCCG
CCGAACCGTCCGTGTTTCATGCGTTGCAGCCGCCGTCCATCACGCCGGTG
GAGTATCTTCGTCGTCTGGCTCGCTATGCGTTCTGTTCGCGTTCTGCTTT
CATCCTCGCCTTCTACTACCTGCAGACGATTGCCAATCTGCAGCCGACCT
GTCTCACCATCAACTCGCTCAGCATCCACCGCTTGCTGCTCACGGCCACG
CTGCTGGCCACCAAGATGGTGGACGACATTCTGTACGACAACGCCCACTT
TGCCAAAGTTGGCGGCCTGGACCTCAAGGAACTCAACATGCTGGAGCTGC
AAATGCTCACCGTCTTGCGCTACCAGCTCTGCGTCAGTGCCGAGCAGTAC
GAGGCCTTTGAACGCTCCGTGCTCAACGACGTCTTTGCGTGCGAGGACTC
GCAGTTCTCCATGCTACACGAGCGGCTGCGAAACATGGGCTACTCGCTCG
ATGAACAACTGCCGCCCTGTTCGCCTGTGTCGTCGCTGGATGACTTTGGC
GCCTCCGACGCGTAA

Coding sequence (CDS) from alignment at tig00000170_pilon:152189..153103+

>Ggra9861.t1 ID=Ggra9861.t1|Name=Ggra9861.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=915bp|location=Sequence derived from alignment at tig00000170_pilon:152189..153103+ (Gracilaria gracilis GNS1m male)
ATGCTTCCGCCGCGCTCGCTTCACGAAAAGGCGCTTCTGCGTCGCGCGTC
GCGCGCGCTCACAGTGCGCAATCATTCGCAGGCCGCCACGCCCACGGCTA
CCGTGCTCGAGCAGCCGCGCTCCACCGTGCTGTACACCGCAGGTCGCAAG
CAGCCGCGCGGCTGCGGCCACGCGCCGTCCAAGCTGGTGGCGTGCAGCCA
GTCCGTGCTGCCGCCTTCGTCTCCGGTTGATCGACCGCGCCTTCAACCGC
GCCTCACCGACTGCGAGCTGCTCATCAGCGTGTTGGAAAGCTACATGACG
CTGCATATTCGTCGCAACGACGCTGCGCACCCATGTGAACGCACGTCACC
CACCGTCAGACACCCCGCGCCGCAGCGCCTGCCCGCGTCGCAACGTGCCG
CCGAACCGTCCGTGTTTCATGCGTTGCAGCCGCCGTCCATCACGCCGGTG
GAGTATCTTCGTCGTCTGGCTCGCTATGCGTTCTGTTCGCGTTCTGCTTT
CATCCTCGCCTTCTACTACCTGCAGACGATTGCCAATCTGCAGCCGACCT
GTCTCACCATCAACTCGCTCAGCATCCACCGCTTGCTGCTCACGGCCACG
CTGCTGGCCACCAAGATGGTGGACGACATTCTGTACGACAACGCCCACTT
TGCCAAAGTTGGCGGCCTGGACCTCAAGGAACTCAACATGCTGGAGCTGC
AAATGCTCACCGTCTTGCGCTACCAGCTCTGCGTCAGTGCCGAGCAGTAC
GAGGCCTTTGAACGCTCCGTGCTCAACGACGTCTTTGCGTGCGAGGACTC
GCAGTTCTCCATGCTACACGAGCGGCTGCGAAACATGGGCTACTCGCTCG
ATGAACAACTGCCGCCCTGTTCGCCTGTGTCGTCGCTGGATGACTTTGGC
GCCTCCGACGCGTAA