Ggra9871.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9871.t1
Unique NameGgra9871.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length220
Homology
BLAST of Ggra9871.t1 vs. uniprot
Match: A0A2V3JA98 (DNA replication complex GINS protein PSF3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3JA98_9FLOR)

HSP 1 Score: 297 bits (761), Expect = 8.880e-100
Identity = 144/221 (65.16%), Postives = 174/221 (78.73%), Query Frame = 0
Query:    1 MEDYFSIDDILAGDHRIFTTFRHQGYNIGFLDPMGVSEWNASHRAPEELESNHNIDKDMPEGMRVALPFWLAEGLLTRNFVKLELPRCYGKQARQALRADARSVDLSAKCSSYFALGVRLAKLVV--DVALPGALVRAFAARCWGTADSAAFSGSKGALAMKGLDWLECELFQEAHAMAIATRRWKERRSDRISARDHVLGKRPREELGSPVTPSTRPRTS 219
            MEDYFSIDDILAG+H I TTF  QG+ +G LDP  V +WNA++  P++ +++ ++D+ MP+GM VALP+WLAE L  RNF K++LPRCYGK  RQALRADARSVDL +KC +Y+ALGVRLA+L+V  DV  PG L+RAFAARCW  AD A FSG +GA AMKG D LEC+LF + H +A+ATRRWKERR DRIS       KRPREE+GSPVTPSTRPRTS
Sbjct:    1 MEDYFSIDDILAGNHCISTTFEEQGFLLGHLDPENVMDWNANNCNPDDYDNDPDLDRHMPKGMTVALPYWLAEALAARNFAKVQLPRCYGKSTRQALRADARSVDLRSKCDNYYALGVRLARLLVGDDVTFPGVLLRAFAARCWSIADMAVFSGDRGAHAMKGFDLLECDLFCDIHGIAVATRRWKERRGDRISGSGAHFRKRPREEIGSPVTPSTRPRTS 221          
BLAST of Ggra9871.t1 vs. uniprot
Match: R7Q771 (DNA replication complex GINS protein psf3 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q771_CHOCR)

HSP 1 Score: 214 bits (545), Expect = 4.900e-67
Identity = 116/216 (53.70%), Postives = 146/216 (67.59%), Query Frame = 0
Query:    1 MEDYFSIDDILAGDHRIFTTFRHQGYNIGFLDPMGVSE-WNASHRAPEELESNHNIDKDMPEGMRVALPFWLAEGLLTRNFVKLELPRCYGKQARQALRADARSVDLSAKCSSYFALGVRLAKLVVDVALPGALVRAFAARCWGTADSAAFSGSKGALAMKGLDWLECELFQEAHAMAIATRRWKERRSDRISARDHVLGKRPREE-LGSPVTPST 214
            MEDYFSIDDIL+ + RI+ TF  Q + +  LDP G +  W+++ ++  E         D+P G R+ALPFWLA+ L  R    LELPRC+   AR ALRADAR+V L  +C +++ALG+R+AKLV D  L  ALVRAFA RCWG  DSA F+G++G  A++GL+  E +LF  AH + IA RRWKERR DRI     VLGKR REE  GSPVTPST
Sbjct:    1 MEDYFSIDDILSSEPRIYATFHVQAHQLAHLDPAGAAAVWSSNKQSSAEDRL------DLPSGHRLALPFWLADSLAQRGVAALELPRCFATGARHALRADARAVRLQTRCPAFYALGLRIAKLVRDSRLSEALVRAFADRCWGIVDSAVFAGARGVAALEGLEEKERKLFFAAHGLDIALRRWKERRIDRIGMAHGVLGKRCREEGPGSPVTPST 210          
BLAST of Ggra9871.t1 vs. uniprot
Match: A0A1X6NKH3 (Uncharacterized protein (Fragment) n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NKH3_PORUM)

HSP 1 Score: 91.7 bits (226), Expect = 3.660e-19
Identity = 69/219 (31.51%), Postives = 96/219 (43.84%), Query Frame = 0
Query:    2 EDYFSIDDILAGDHRIFTTFRHQGYNIGFLDPMGVSEWNASHRAPEE----LESNHNIDKDMPEGMRVALPFWLAEGLLTRNFVKLELPRCYGKQARQALRADARSVDLSAKCSSYFALGVRLAKLVV-DVALPGALVRAFAARCWGTADSAAFSGSK------------------------GALAMKGLDWLECELFQEAHAMAIATRRWKERRSDRI 191
            +DYF ID ILA    +F  F      + +LDP       AS   P        +   +   +P G+RV LP+WLAE L  R+ V LELPR Y  +AR  L ADA  V L+ + S Y+  G RL  L+  +  L   L  ++AAR W   D+A ++ S                         G   +  LD  E +L+  A   A+A   W+    DR+
Sbjct:    5 DDYFDIDAILATSDPVFCAFSVAADGLAYLDPASAL---ASTLTPTSGLPTASAAVPLTNTLPAGLRVGLPYWLAETLAERSLVTLELPRPYDGRARAELIADAPHVALADRASHYYRWGARLGGLLDGEAGLAPLLAASWAARAWRIVDAATYAASXXXXXXXXXXXXXXXXXXXXXXXXGGDGLLPKLDADERDLYFAARGAALAAAEWRRGAGDRV 220          
BLAST of Ggra9871.t1 vs. uniprot
Match: A0A0L0DJQ1 (DNA replication complex GINS protein PSF3 n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DJQ1_THETB)

HSP 1 Score: 87.0 bits (214), Expect = 1.090e-17
Identity = 66/205 (32.20%), Postives = 96/205 (46.83%), Query Frame = 0
Query:    4 YFSIDDILAGDHRIFTTFRHQGYNIGFLDPMGVSEWNASHRAPEELESNHNIDKDMPEGMRVALPFWLAEGLLTRNFVKLELPRCYGKQARQALRADARSVDLSAKCSSYFALGVRLAKLVVDVALPGALVRAFAARCWGTADSAAFSGSKG-ALAMKGLDWLECELFQEAHAMAIATRRWKERRSDRISARDHVLGKRPREELG 207
            Y+ ID IL  D  +   F     ++G LDP   S                +ID    +G    +P WLA  L  R+ V L  P  +G+  +  L ADA+ +++  KC  ++ LGV+LAKL  + ALP  L +AF  R     D++   G+   +  ++ L   E  LF   HA A    R+K R +DR++A   V  KR R  LG
Sbjct:    3 YYDIDAILLDDQIVPAHFNTAAMDLGVLDPSTPSP---------------HID----QGTETDIPLWLALSLAKRSIVTLRSPSFFGESFQAHLLADAQVLNIHDKCPFFYELGVKLAKLTGNWALPAVLKKAFHTRYLRIVDTSINLGAADYSEHIRKLTTAERNLFHLGHAAAAEVLRYKTRDTDRLAASAVVTRKRRRAALG 188          
BLAST of Ggra9871.t1 vs. uniprot
Match: A0A197JXV3 (DNA replication complex GINS protein PSF3 n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197JXV3_9FUNG)

HSP 1 Score: 85.9 bits (211), Expect = 2.910e-17
Identity = 66/206 (32.04%), Postives = 95/206 (46.12%), Query Frame = 0
Query:    1 MEDYFSIDDILAGDHRIFTTFRHQGYNIGFLDPMGVSEWNASHRAPEELESNHNIDKDMPEGMRVALPFWLAEGLLTRNF----VKLELPRCYGKQARQALRADARSVDLSAKCSSYFALGVRLAKLVVDVALPGALVRAFAARCWGTADSAAFSGSKGALA-MKGLDWLECELFQEAHAMAIATRRWKERRSDRISARDHVLGKR 201
            MEDY+ ID ILA D  +   F+    NI  L       W         LE  H  D  +  G R  +PFWLA  L+  +     + +E P  +G + R ALRADA +VDL+ +C ++F  G    +LV D+AL G +  AF AR   T D     G+      +  LD  E  L++     + +  +W +    RI +   +L KR
Sbjct:    1 MEDYYDIDAILAEDQNVKCAFQS---NIPGL------AW---------LEGGH--DDALKAGSRFDIPFWLARELVEHDEETVGMDIETPEFFGPKVRNALRADANTVDLTKQCPNFFRFGTVYLQLVDDMALSGVMEEAFKARLQMTMDHTQSGGNSNTTDYLNRLDETERALYKAGMESSASIHQWNQHSFGRIRSASEMLLKR 186          
BLAST of Ggra9871.t1 vs. uniprot
Match: A0A0S6XPX3 (DNA replication complex GINS protein PSF3 n=5 Tax=Fungi TaxID=4751 RepID=A0A0S6XPX3_BLOB1)

HSP 1 Score: 82.0 bits (201), Expect = 6.740e-16
Identity = 59/194 (30.41%), Postives = 87/194 (44.85%), Query Frame = 0
Query:    1 MEDYFSIDDILAGDHRIFTTFRHQGYNIGFLDPMGVSEWNASHRAPEELESNHNIDKDMPEGMRVALPFWLAEGLLTRN------FVKLELPRCYGKQARQALRADARSVDLSAKCSSYFALGVRLAKLVVDVALPGALVRAFAARCWGTADSAAFSGS---KGALAMKGLDWLECELFQEAHAMAIATRRWKE 185
            M  Y+ +D IL    ++  TF      +G+L                    N NI  D+  G +V LP WL E L             L+LP    ++   AL+ADA++VD+ A+   ++A+G R+ +L  +  L   L   F  R    AD A  S S   +GA  M+GLD  E +LF  AH  + A ++W E
Sbjct:    1 MTSYYDVDAILTDAQKVPVTFEIDVPGLGYL--------------------NGNIGGDIKAGTKVELPLWLGEMLAVSQPAGLSALATLDLPPALSQRVINALKADAKTVDIRAQAQHFYAIGTRMLELFEEEELIDVLTETFRKRAAEIADQAHNSRSALGEGAEFMRGLDETERQLFHAAHDNSNAVKKWFE 174          
BLAST of Ggra9871.t1 vs. uniprot
Match: A0A6A6UTJ2 (DNA replication complex GINS protein PSF3 n=1 Tax=Microthyrium microscopicum TaxID=703497 RepID=A0A6A6UTJ2_9PEZI)

HSP 1 Score: 78.6 bits (192), Expect = 1.350e-14
Identity = 61/189 (32.28%), Postives = 88/189 (46.56%), Query Frame = 0
Query:    4 YFSIDDILAGDHRIFTTFRHQGYNIGFLDPMGVSEWNASHRAPEELESNHNIDKDMPEGMRVALPFWLAEGL-LTRNF-----VKLELPRCYGKQARQALRADARSVDLSAKCSSYFALGVRLAKLVVDVALPGALVRAFAARCWGTADSAAFSG-SKGALA--MKGLDWLECELFQEAHAMAIATRRW 183
            Y+ +D IL    ++  TF      +G+L+                     N   D+ +G ++ LP WL E L ++RN      + L+LP+C       AL+ADAR+V+L A    ++ALG R+  L  D  L   L  +F  R    AD A  SG S G  A  ++GLD  E +LF+ AH    A R W
Sbjct:    3 YYDVDAILTDAQKVPCTFEITVPGLGYLEG--------------------NPGNDIKQGAKLELPLWLGEMLAVSRNASEESNLTLDLPKCLSAHVVNALKADARTVELRALAPHFYALGARILDLFEDEELSSVLSESFKKRAREIADQAHNSGRSLGDAADFLRGLDEEERQLFRTAHESTKAVRVW 171          
BLAST of Ggra9871.t1 vs. uniprot
Match: A0A6G1K3J3 (DNA replication complex GINS protein PSF3 n=1 Tax=Pleomassaria siparia CBS 279.74 TaxID=1314801 RepID=A0A6G1K3J3_9PLEO)

HSP 1 Score: 77.8 bits (190), Expect = 2.680e-14
Identity = 60/194 (30.93%), Postives = 88/194 (45.36%), Query Frame = 0
Query:    1 MEDYFSIDDILAGDHRIFTTFRHQGYNIGFLDPMGVSEWNASHRAPEELESNHNIDKDMPEGMRVALPFWLAE------GLLTRNFVKLELPRCYGKQARQALRADARSVDLSAKCSSYFALGVRLAKLVVDVALPGALVRAFAARCWGTADSAAFSGSKGALA-----MKGLDWLECELFQEAHAMAIATRRW 183
            M  Y+ ID IL    ++  TF      +G+++                     N++ DM +G +V LP WL E       L T + V L+ P     +   AL+ADAR+VDL A    ++ LG R+ +L  +  +   L  +F +R    AD A     +GAL      M+GLD  E +LF+ AH  A A R W
Sbjct:    1 MGSYYDIDAILTDAQKVPCTFELTVPGLGYVEG--------------------NMNGDMKQGSKVELPLWLGEMLALSQSLNTSSLVTLDTPAALAPRVMNALKADARTVDLRALAPHFYNLGARILELFEEEDMIEVLSDSFKSRAAIIADQA--HNPRGALGEGADFMRGLDENERQLFRAAHDSAKAVRTW 172          
BLAST of Ggra9871.t1 vs. uniprot
Match: A0A316UYF5 (DNA replication complex GINS protein PSF3 n=1 Tax=Jaminaea rosea TaxID=1569628 RepID=A0A316UYF5_9BASI)

HSP 1 Score: 77.8 bits (190), Expect = 8.160e-14
Identity = 46/122 (37.70%), Postives = 65/122 (53.28%), Query Frame = 0
Query:    4 YFSIDDILAGDHRIFTTFRHQGYNIGFL--DPMGVSEWNASHRAPEELESNHNIDKDMPEGMRVALPFWLAEGLLTRNFVKLELPRCYGKQARQALRADARSVDLSAKCSSYFALGVRLAKL 123
            Y+SI  ILA   RI  TF     N+  L  D    +++ +S  +        +    + E  R+ LPFWLAE L   + V   LPR Y ++ R AL ADA+SV L ++ + ++ALGVRLA L
Sbjct:    5 YWSISSILADSSRIPCTFNLDVPNLSHLRGDSSVDNQFQSSQASASSSSQMDDSSDTIREKSRLELPFWLAEMLALNDIVSPSLPRPYSQRVRNALNADAKSVQLRSQANWWYALGVRLASL 126          
BLAST of Ggra9871.t1 vs. uniprot
Match: A0A177CZY9 (DNA replication complex GINS protein PSF3 n=2 Tax=Didymosphaeriaceae TaxID=221678 RepID=A0A177CZY9_9PLEO)

HSP 1 Score: 75.1 bits (183), Expect = 2.550e-13
Identity = 58/191 (30.37%), Postives = 87/191 (45.55%), Query Frame = 0
Query:    1 MEDYFSIDDILAGDHRIFTTFRHQGYNIGFLDPMGVSEWNASHRAPEELESNHNIDKDMPEGMRVALPFWLAEGLL---TRNFVKLELPRCYGKQARQALRADARSVDLSAKCSSYFALGVRLAKLVVDVALPGALVRAFAARCWGTADSAAFSGSKGALA-----MKGLDWLECELFQEAHAMAIATRRW 183
            M  Y+ +D IL    ++  TF      +GFL+                     N+  D+ +G +V LP WL E L    + + V L+ P     +   AL+ADAR+VDL A    ++ LG R+ +L  +  +   L  AF +R    AD A     +GAL      ++GLD  E +LF+ +H  A A R W
Sbjct:    1 MTSYYDVDAILTDAQKVPCTFELSVPALGFLEG--------------------NMSGDVKQGSKVELPLWLGEMLAISQSPSLVSLDHPSALSPRVLNALKADARTVDLRALAPHFYNLGARVLELFEEEEMIEVLSDAFKSRAAVIADQA--HNPRGALGEGADFLRGLDENERQLFRASHDSAKAVRTW 169          
The following BLAST results are available for this feature:
BLAST of Ggra9871.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3JA988.880e-10065.16DNA replication complex GINS protein PSF3 n=1 Tax=... [more]
R7Q7714.900e-6753.70DNA replication complex GINS protein psf3 n=1 Tax=... [more]
A0A1X6NKH33.660e-1931.51Uncharacterized protein (Fragment) n=1 Tax=Porphyr... [more]
A0A0L0DJQ11.090e-1732.20DNA replication complex GINS protein PSF3 n=1 Tax=... [more]
A0A197JXV32.910e-1732.04DNA replication complex GINS protein PSF3 n=1 Tax=... [more]
A0A0S6XPX36.740e-1630.41DNA replication complex GINS protein PSF3 n=5 Tax=... [more]
A0A6A6UTJ21.350e-1432.28DNA replication complex GINS protein PSF3 n=1 Tax=... [more]
A0A6G1K3J32.680e-1430.93DNA replication complex GINS protein PSF3 n=1 Tax=... [more]
A0A316UYF58.160e-1437.70DNA replication complex GINS protein PSF3 n=1 Tax=... [more]
A0A177CZY92.550e-1330.37DNA replication complex GINS protein PSF3 n=2 Tax=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038437GINS complex, subunit Psf3 superfamilyGENE3D1.20.58.2050coord: 1..185
e-value: 1.7E-40
score: 140.5
IPR021151GINS subunit, domain APFAMPF05916Sld5coord: 66..123
e-value: 3.8E-6
score: 27.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 193..219
NoneNo IPR availableCDDcd11713GINS_A_psf3coord: 80..186
e-value: 1.10397E-18
score: 76.1507
NoneNo IPR availableSUPERFAMILY160059PriA/YqbF domaincoord: 1..86
IPR010492GINS complex, subunit Psf3PANTHERPTHR22768UNCHARACTERIZEDcoord: 1..202
IPR036224GINS, helical bundle-like domain superfamilySUPERFAMILY158573GINS helical bundle-likecoord: 85..184

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000170_piloncontigtig00000170_pilon:176022..176681 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9871.t1Ggra9871.t1Gracilaria gracilis GNS1m malemRNAtig00000170_pilon 176022..176681 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9871.t1 ID=Ggra9871.t1|Name=Ggra9871.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=220bp
MEDYFSIDDILAGDHRIFTTFRHQGYNIGFLDPMGVSEWNASHRAPEELE
SNHNIDKDMPEGMRVALPFWLAEGLLTRNFVKLELPRCYGKQARQALRAD
ARSVDLSAKCSSYFALGVRLAKLVVDVALPGALVRAFAARCWGTADSAAF
SGSKGALAMKGLDWLECELFQEAHAMAIATRRWKERRSDRISARDHVLGK
RPREELGSPVTPSTRPRTS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038437GINS_Psf3_sf
IPR021151GINS_A
IPR010492GINS_Psf3
IPR036224GINS_bundle-like_dom_sf