Ggra9871.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9871.t1
Unique NameGgra9871.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length220
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000170_piloncontigtig00000170_pilon:176022..176681 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog109760.SPPG_01872T0
Preferred namePSF3
PFAMsSld5
Max annot lvl4751|Fungi
KEGG koko:K10734
KEGG ModuleM00286
GOsGO:0000228,GO:0000278,GO:0000724,GO:0000725,GO:0000727,GO:0000785,GO:0000790,GO:0000811,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007049,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0022402,GO:0031261,GO:0031298,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0033260,GO:0033554,GO:0034641,GO:0034645,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044786,GO:0046483,GO:0050896,GO:0051716,GO:0070013,GO:0071162,GO:0071704,GO:0090304,GO:1901360,GO:1901576,GO:1902292,GO:1902315,GO:1902969,GO:1902975,GO:1903047
Evalue9.98e-22
EggNOG OGsCOG5138@1|root,KOG1106@2759|Eukaryota,3A050@33154|Opisthokonta,3P24V@4751|Fungi
DescriptionDna replication complex gins protein psf3
COG categoryL
BRITEko00000,ko00002,ko03032
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9871Ggra9871Gracilaria gracilis GNS1m malegenetig00000170_pilon 176022..176681 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9871.t1.stop1Ggra9871.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000170_pilon 176022..176024 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9871.t1.CDS1Ggra9871.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000170_pilon 176022..176681 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9871.t1.exon1Ggra9871.t1.exon1Gracilaria gracilis GNS1m maleexontig00000170_pilon 176022..176681 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9871.t1.start1Ggra9871.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000170_pilon 176679..176681 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9871.t1Ggra9871.t1Gracilaria gracilis GNS1m malepolypeptidetig00000170_pilon 176022..176681 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9871.t1 ID=Ggra9871.t1|Name=Ggra9871.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=220bp
MEDYFSIDDILAGDHRIFTTFRHQGYNIGFLDPMGVSEWNASHRAPEELE
SNHNIDKDMPEGMRVALPFWLAEGLLTRNFVKLELPRCYGKQARQALRAD
ARSVDLSAKCSSYFALGVRLAKLVVDVALPGALVRAFAARCWGTADSAAF
SGSKGALAMKGLDWLECELFQEAHAMAIATRRWKERRSDRISARDHVLGK
RPREELGSPVTPSTRPRTS*
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spliced messenger RNA

>Ggra9871.t1 ID=Ggra9871.t1|Name=Ggra9871.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=660bp|location=Sequence derived from alignment at tig00000170_pilon:176022..176681- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGACTACTTTTCAATCGATGACATTCTCGCAGGTGACCATCGCAT
CTTCACAACCTTCCGTCACCAAGGGTATAATATCGGCTTCCTTGACCCCA
TGGGTGTTTCGGAATGGAACGCTTCCCATCGAGCGCCGGAAGAACTGGAG
AGCAACCACAATATTGACAAGGACATGCCGGAAGGTATGCGAGTAGCGTT
GCCTTTCTGGCTGGCTGAAGGTCTTCTGACAAGGAACTTCGTTAAGCTCG
AACTCCCAAGATGCTATGGGAAGCAAGCGAGACAAGCGCTGCGCGCCGAT
GCACGTTCAGTGGATCTGTCCGCAAAATGCAGTTCCTATTTCGCTCTCGG
CGTTCGCCTCGCTAAGCTGGTTGTTGATGTGGCGTTGCCAGGTGCGCTCG
TCCGAGCTTTTGCAGCTCGCTGTTGGGGAACTGCCGACTCTGCGGCCTTC
TCGGGAAGCAAAGGGGCTCTGGCAATGAAAGGGCTTGATTGGCTTGAATG
TGAACTTTTTCAGGAGGCGCACGCCATGGCGATCGCCACAAGAAGGTGGA
AGGAAAGGAGAAGCGATAGAATATCTGCAAGAGACCACGTGCTTGGCAAG
AGACCACGGGAAGAGCTCGGAAGTCCGGTAACACCATCAACTCGTCCGCG
AACAAGTTAG
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protein sequence of Ggra9871.t1

>Ggra9871.t1 ID=Ggra9871.t1|Name=Ggra9871.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=220bp
MEDYFSIDDILAGDHRIFTTFRHQGYNIGFLDPMGVSEWNASHRAPEELE
SNHNIDKDMPEGMRVALPFWLAEGLLTRNFVKLELPRCYGKQARQALRAD
ARSVDLSAKCSSYFALGVRLAKLVVDVALPGALVRAFAARCWGTADSAAF
SGSKGALAMKGLDWLECELFQEAHAMAIATRRWKERRSDRISARDHVLGK
RPREELGSPVTPSTRPRTS*
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mRNA from alignment at tig00000170_pilon:176022..176681-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9871.t1 ID=Ggra9871.t1|Name=Ggra9871.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=660bp|location=Sequence derived from alignment at tig00000170_pilon:176022..176681- (Gracilaria gracilis GNS1m male)
ATGGAAGACTACTTTTCAATCGATGACATTCTCGCAGGTGACCATCGCAT
CTTCACAACCTTCCGTCACCAAGGGTATAATATCGGCTTCCTTGACCCCA
TGGGTGTTTCGGAATGGAACGCTTCCCATCGAGCGCCGGAAGAACTGGAG
AGCAACCACAATATTGACAAGGACATGCCGGAAGGTATGCGAGTAGCGTT
GCCTTTCTGGCTGGCTGAAGGTCTTCTGACAAGGAACTTCGTTAAGCTCG
AACTCCCAAGATGCTATGGGAAGCAAGCGAGACAAGCGCTGCGCGCCGAT
GCACGTTCAGTGGATCTGTCCGCAAAATGCAGTTCCTATTTCGCTCTCGG
CGTTCGCCTCGCTAAGCTGGTTGTTGATGTGGCGTTGCCAGGTGCGCTCG
TCCGAGCTTTTGCAGCTCGCTGTTGGGGAACTGCCGACTCTGCGGCCTTC
TCGGGAAGCAAAGGGGCTCTGGCAATGAAAGGGCTTGATTGGCTTGAATG
TGAACTTTTTCAGGAGGCGCACGCCATGGCGATCGCCACAAGAAGGTGGA
AGGAAAGGAGAAGCGATAGAATATCTGCAAGAGACCACGTGCTTGGCAAG
AGACCACGGGAAGAGCTCGGAAGTCCGGTAACACCATCAACTCGTCCGCG
AACAAGTTAG
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Coding sequence (CDS) from alignment at tig00000170_pilon:176022..176681-

>Ggra9871.t1 ID=Ggra9871.t1|Name=Ggra9871.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=660bp|location=Sequence derived from alignment at tig00000170_pilon:176022..176681- (Gracilaria gracilis GNS1m male)
ATGGAAGACTACTTTTCAATCGATGACATTCTCGCAGGTGACCATCGCAT
CTTCACAACCTTCCGTCACCAAGGGTATAATATCGGCTTCCTTGACCCCA
TGGGTGTTTCGGAATGGAACGCTTCCCATCGAGCGCCGGAAGAACTGGAG
AGCAACCACAATATTGACAAGGACATGCCGGAAGGTATGCGAGTAGCGTT
GCCTTTCTGGCTGGCTGAAGGTCTTCTGACAAGGAACTTCGTTAAGCTCG
AACTCCCAAGATGCTATGGGAAGCAAGCGAGACAAGCGCTGCGCGCCGAT
GCACGTTCAGTGGATCTGTCCGCAAAATGCAGTTCCTATTTCGCTCTCGG
CGTTCGCCTCGCTAAGCTGGTTGTTGATGTGGCGTTGCCAGGTGCGCTCG
TCCGAGCTTTTGCAGCTCGCTGTTGGGGAACTGCCGACTCTGCGGCCTTC
TCGGGAAGCAAAGGGGCTCTGGCAATGAAAGGGCTTGATTGGCTTGAATG
TGAACTTTTTCAGGAGGCGCACGCCATGGCGATCGCCACAAGAAGGTGGA
AGGAAAGGAGAAGCGATAGAATATCTGCAAGAGACCACGTGCTTGGCAAG
AGACCACGGGAAGAGCTCGGAAGTCCGGTAACACCATCAACTCGTCCGCG
AACAAGTTAG
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