Ggra9880.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9880.t1
Unique NameGgra9880.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length284
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000170_piloncontigtig00000170_pilon:198916..199767 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9880Ggra9880Gracilaria gracilis GNS1m malegenetig00000170_pilon 198916..199767 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9880.t1.stop1Ggra9880.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000170_pilon 198916..198918 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9880.t1.CDS1Ggra9880.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000170_pilon 198916..199767 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9880.t1.exon1Ggra9880.t1.exon1Gracilaria gracilis GNS1m maleexontig00000170_pilon 198916..199767 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9880.t1.start1Ggra9880.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000170_pilon 199765..199767 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9880.t1Ggra9880.t1Gracilaria gracilis GNS1m malepolypeptidetig00000170_pilon 198916..199767 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9880.t1 ID=Ggra9880.t1|Name=Ggra9880.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=284bp
MVTDAETSAPLNPTAQLPTAVANHTSVPAKKKKKRRNATSGTSSENSSAS
ASPPPSEAHDDSVHSDTSPATMERWKHRVQSLRSSLSQVQADNRVLSADL
KAATARANDAEQAETAVNKGLLTARSVISQRDRSIAELNAMVSNQRADFR
RLEEEKKKLDRRLLLLKTVSANLQEAREERDTAERRLEEMQSCSARQKKK
LTHLQQLIDAHEKQLEVLELKDKQLDKLQRQLQDLREEKHSAEQQAARRS
VIAAGASAVGGVVAALALCLVTRARSDDDQHSR*
back to top

spliced messenger RNA

>Ggra9880.t1 ID=Ggra9880.t1|Name=Ggra9880.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=852bp|location=Sequence derived from alignment at tig00000170_pilon:198916..199767- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTACGGACGCCGAAACATCAGCCCCTTTAAACCCGACCGCGCAATT
GCCCACTGCCGTTGCGAACCACACTTCCGTGCCTGCAAAGAAAAAGAAGA
AGAGAAGGAATGCCACCTCTGGCACCAGCTCTGAGAACTCCTCTGCATCC
GCCTCACCGCCCCCCTCGGAAGCACACGATGACAGTGTGCACTCGGACAC
ATCGCCGGCCACCATGGAGCGATGGAAGCACCGCGTGCAGAGCCTACGTT
CCTCGCTGAGCCAGGTGCAGGCCGACAATCGCGTGCTGTCGGCCGATCTC
AAGGCCGCCACGGCACGCGCGAATGACGCGGAGCAGGCCGAGACCGCCGT
CAACAAGGGCTTGCTCACTGCTCGTTCTGTTATCAGCCAACGAGATCGGT
CCATTGCTGAGCTTAATGCCATGGTGTCGAACCAGCGTGCAGACTTTCGT
CGCCTGGAGGAGGAGAAGAAAAAGCTGGACAGAAGATTGCTGTTGCTCAA
GACCGTCAGCGCTAATCTACAGGAGGCCAGGGAGGAACGAGATACCGCTG
AAAGAAGATTGGAGGAGATGCAATCCTGTTCCGCGCGTCAGAAGAAGAAG
CTGACTCATTTGCAACAACTAATTGATGCGCATGAGAAACAATTGGAAGT
ATTGGAATTGAAGGACAAGCAACTTGATAAGCTTCAACGTCAGCTGCAGG
ACTTACGGGAAGAGAAGCACTCTGCGGAGCAACAGGCTGCAAGGAGAAGT
GTGATTGCGGCTGGCGCCAGTGCGGTTGGCGGTGTGGTGGCAGCGCTTGC
ACTGTGCCTTGTGACTCGTGCAAGAAGCGACGACGACCAGCACAGCCGCT
AA
back to top

protein sequence of Ggra9880.t1

>Ggra9880.t1 ID=Ggra9880.t1|Name=Ggra9880.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=284bp
MVTDAETSAPLNPTAQLPTAVANHTSVPAKKKKKRRNATSGTSSENSSAS
ASPPPSEAHDDSVHSDTSPATMERWKHRVQSLRSSLSQVQADNRVLSADL
KAATARANDAEQAETAVNKGLLTARSVISQRDRSIAELNAMVSNQRADFR
RLEEEKKKLDRRLLLLKTVSANLQEAREERDTAERRLEEMQSCSARQKKK
LTHLQQLIDAHEKQLEVLELKDKQLDKLQRQLQDLREEKHSAEQQAARRS
VIAAGASAVGGVVAALALCLVTRARSDDDQHSR*
back to top

mRNA from alignment at tig00000170_pilon:198916..199767-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9880.t1 ID=Ggra9880.t1|Name=Ggra9880.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=852bp|location=Sequence derived from alignment at tig00000170_pilon:198916..199767- (Gracilaria gracilis GNS1m male)
ATGGTTACGGACGCCGAAACATCAGCCCCTTTAAACCCGACCGCGCAATT
GCCCACTGCCGTTGCGAACCACACTTCCGTGCCTGCAAAGAAAAAGAAGA
AGAGAAGGAATGCCACCTCTGGCACCAGCTCTGAGAACTCCTCTGCATCC
GCCTCACCGCCCCCCTCGGAAGCACACGATGACAGTGTGCACTCGGACAC
ATCGCCGGCCACCATGGAGCGATGGAAGCACCGCGTGCAGAGCCTACGTT
CCTCGCTGAGCCAGGTGCAGGCCGACAATCGCGTGCTGTCGGCCGATCTC
AAGGCCGCCACGGCACGCGCGAATGACGCGGAGCAGGCCGAGACCGCCGT
CAACAAGGGCTTGCTCACTGCTCGTTCTGTTATCAGCCAACGAGATCGGT
CCATTGCTGAGCTTAATGCCATGGTGTCGAACCAGCGTGCAGACTTTCGT
CGCCTGGAGGAGGAGAAGAAAAAGCTGGACAGAAGATTGCTGTTGCTCAA
GACCGTCAGCGCTAATCTACAGGAGGCCAGGGAGGAACGAGATACCGCTG
AAAGAAGATTGGAGGAGATGCAATCCTGTTCCGCGCGTCAGAAGAAGAAG
CTGACTCATTTGCAACAACTAATTGATGCGCATGAGAAACAATTGGAAGT
ATTGGAATTGAAGGACAAGCAACTTGATAAGCTTCAACGTCAGCTGCAGG
ACTTACGGGAAGAGAAGCACTCTGCGGAGCAACAGGCTGCAAGGAGAAGT
GTGATTGCGGCTGGCGCCAGTGCGGTTGGCGGTGTGGTGGCAGCGCTTGC
ACTGTGCCTTGTGACTCGTGCAAGAAGCGACGACGACCAGCACAGCCGCT
AA
back to top

Coding sequence (CDS) from alignment at tig00000170_pilon:198916..199767-

>Ggra9880.t1 ID=Ggra9880.t1|Name=Ggra9880.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=852bp|location=Sequence derived from alignment at tig00000170_pilon:198916..199767- (Gracilaria gracilis GNS1m male)
ATGGTTACGGACGCCGAAACATCAGCCCCTTTAAACCCGACCGCGCAATT
GCCCACTGCCGTTGCGAACCACACTTCCGTGCCTGCAAAGAAAAAGAAGA
AGAGAAGGAATGCCACCTCTGGCACCAGCTCTGAGAACTCCTCTGCATCC
GCCTCACCGCCCCCCTCGGAAGCACACGATGACAGTGTGCACTCGGACAC
ATCGCCGGCCACCATGGAGCGATGGAAGCACCGCGTGCAGAGCCTACGTT
CCTCGCTGAGCCAGGTGCAGGCCGACAATCGCGTGCTGTCGGCCGATCTC
AAGGCCGCCACGGCACGCGCGAATGACGCGGAGCAGGCCGAGACCGCCGT
CAACAAGGGCTTGCTCACTGCTCGTTCTGTTATCAGCCAACGAGATCGGT
CCATTGCTGAGCTTAATGCCATGGTGTCGAACCAGCGTGCAGACTTTCGT
CGCCTGGAGGAGGAGAAGAAAAAGCTGGACAGAAGATTGCTGTTGCTCAA
GACCGTCAGCGCTAATCTACAGGAGGCCAGGGAGGAACGAGATACCGCTG
AAAGAAGATTGGAGGAGATGCAATCCTGTTCCGCGCGTCAGAAGAAGAAG
CTGACTCATTTGCAACAACTAATTGATGCGCATGAGAAACAATTGGAAGT
ATTGGAATTGAAGGACAAGCAACTTGATAAGCTTCAACGTCAGCTGCAGG
ACTTACGGGAAGAGAAGCACTCTGCGGAGCAACAGGCTGCAAGGAGAAGT
GTGATTGCGGCTGGCGCCAGTGCGGTTGGCGGTGTGGTGGCAGCGCTTGC
ACTGTGCCTTGTGACTCGTGCAAGAAGCGACGACGACCAGCACAGCCGCT
AA
back to top