Ggra9866.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9866.t1
Unique NameGgra9866.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length282
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000170_piloncontigtig00000170_pilon:160885..161826 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709020.1
Preferred nameTMBIM4
PFAMsBax1-I
Max annot lvl2759|Eukaryota
KEGG koko:K06890
GOsGO:0000139,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005783,GO:0005789,GO:0005794,GO:0005795,GO:0006915,GO:0006950,GO:0006986,GO:0007154,GO:0007165,GO:0008150,GO:0008219,GO:0009966,GO:0009987,GO:0010033,GO:0010646,GO:0010941,GO:0012501,GO:0012505,GO:0016020,GO:0016021,GO:0019722,GO:0019932,GO:0023051,GO:0023052,GO:0030176,GO:0030968,GO:0031090,GO:0031224,GO:0031227,GO:0031984,GO:0033554,GO:0034620,GO:0034976,GO:0035556,GO:0035966,GO:0035967,GO:0042175,GO:0042221,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0048519,GO:0048523,GO:0048583,GO:0050789,GO:0050794,GO:0050848,GO:0050896,GO:0051716,GO:0060548,GO:0065007,GO:0070887,GO:0071310,GO:0098588,GO:0098791,GO:0098827,GO:1902531
Evalue2.34e-69
EggNOG OGsCOG0670@1|root,KOG2322@2759|Eukaryota
Descriptionnegative regulation of Fas signaling pathway
COG categoryA
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9866Ggra9866Gracilaria gracilis GNS1m malegenetig00000170_pilon 160885..161826 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9866.t1Ggra9866.t1Gracilaria gracilis GNS1m malepolypeptidetig00000170_pilon 160885..161826 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9866.t1.stop1Ggra9866.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000170_pilon 160885..160887 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9866.t1.CDS1Ggra9866.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000170_pilon 160885..161006 -
Ggra9866.t1.CDS2Ggra9866.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000170_pilon 161103..161826 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9866.t1.exon1Ggra9866.t1.exon1Gracilaria gracilis GNS1m maleexontig00000170_pilon 160885..161006 -
Ggra9866.t1.exon2Ggra9866.t1.exon2Gracilaria gracilis GNS1m maleexontig00000170_pilon 161103..161826 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9866.t1.intron1Ggra9866.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000170_pilon 161007..161102 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9866.t1.start1Ggra9866.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000170_pilon 161824..161826 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9866.t1 ID=Ggra9866.t1|Name=Ggra9866.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=282bp
MSAMRDSIDMEPLRAMPRGAADASRSVNREAKSALPASNKTGFGEDYAND
FAYGTSVATCEPIIRLGFIRKVYGILAAQLALTVLICSLFMYIKPLRMFA
INANGFLAIVSMIGTFGTLFALLAFKDSHPTNIQLLAAFTVFESFLVGSV
CAQYVQSGLGGLVLEALVITLAIFSGITLYAFASKKDFSFMGGALYAALI
GLLVASIVNLFIGFTGNKSPLLAMLISYGGALLFSLYILYDTSMIMHHLG
PDDAIMGAIMLYLDLLNLFLYILAILSRNRD*
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spliced messenger RNA

>Ggra9866.t1 ID=Ggra9866.t1|Name=Ggra9866.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=846bp|location=Sequence derived from alignment at tig00000170_pilon:160885..161826- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGCCATGCGCGACTCCATCGACATGGAACCTCTTCGAGCCATGCC
ACGCGGTGCCGCCGACGCGTCGCGAAGTGTCAACAGGGAAGCTAAATCTG
CGCTTCCTGCTTCGAACAAAACTGGTTTCGGAGAAGACTACGCGAATGAC
TTTGCGTACGGTACCAGTGTGGCTACATGCGAACCTATCATTCGCCTAGG
CTTTATTCGCAAGGTTTACGGCATTCTAGCCGCTCAGCTTGCTCTCACCG
TCTTGATATGTTCCTTGTTTATGTACATTAAGCCGTTGCGTATGTTTGCA
ATTAACGCTAATGGTTTTCTTGCAATTGTTTCCATGATAGGTACTTTTGG
TACACTGTTCGCGCTTCTTGCTTTCAAAGACTCACATCCGACCAATATCC
AGCTGTTAGCCGCTTTTACCGTGTTTGAATCGTTTTTGGTGGGCTCAGTT
TGCGCCCAATATGTACAATCTGGTCTGGGTGGTTTGGTGCTTGAGGCGCT
GGTGATTACGCTAGCCATATTCTCGGGTATTACGTTGTATGCTTTTGCTT
CCAAGAAAGACTTTTCTTTCATGGGAGGAGCTTTATATGCTGCGCTGATT
GGCCTTCTGGTCGCCTCTATCGTCAACCTCTTCATTGGTTTCACTGGCAA
CAAGAGCCCCCTCTTGGCAATGTTGATTTCATACGGAGGAGCTCTTTTGT
TCAGTCTTTACATCCTCTACGACACTTCGATGATCATGCATCACCTTGGT
CCCGACGACGCCATCATGGGCGCGATTATGCTATACTTGGATCTGTTGAA
TCTATTTTTGTACATCCTGGCAATCCTATCCAGAAACCGCGATTAG
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protein sequence of Ggra9866.t1

>Ggra9866.t1 ID=Ggra9866.t1|Name=Ggra9866.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=282bp
MSAMRDSIDMEPLRAMPRGAADASRSVNREAKSALPASNKTGFGEDYAND
FAYGTSVATCEPIIRLGFIRKVYGILAAQLALTVLICSLFMYIKPLRMFA
INANGFLAIVSMIGTFGTLFALLAFKDSHPTNIQLLAAFTVFESFLVGSV
CAQYVQSGLGGLVLEALVITLAIFSGITLYAFASKKDFSFMGGALYAALI
GLLVASIVNLFIGFTGNKSPLLAMLISYGGALLFSLYILYDTSMIMHHLG
PDDAIMGAIMLYLDLLNLFLYILAILSRNRD*
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mRNA from alignment at tig00000170_pilon:160885..161826-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9866.t1 ID=Ggra9866.t1|Name=Ggra9866.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=942bp|location=Sequence derived from alignment at tig00000170_pilon:160885..161826- (Gracilaria gracilis GNS1m male)
ATGTCTGCCATGCGCGACTCCATCGACATGGAACCTCTTCGAGCCATGCC
ACGCGGTGCCGCCGACGCGTCGCGAAGTGTCAACAGGGAAGCTAAATCTG
CGCTTCCTGCTTCGAACAAAACTGGTTTCGGAGAAGACTACGCGAATGAC
TTTGCGTACGGTACCAGTGTGGCTACATGCGAACCTATCATTCGCCTAGG
CTTTATTCGCAAGGTTTACGGCATTCTAGCCGCTCAGCTTGCTCTCACCG
TCTTGATATGTTCCTTGTTTATGTACATTAAGCCGTTGCGTATGTTTGCA
ATTAACGCTAATGGTTTTCTTGCAATTGTTTCCATGATAGGTACTTTTGG
TACACTGTTCGCGCTTCTTGCTTTCAAAGACTCACATCCGACCAATATCC
AGCTGTTAGCCGCTTTTACCGTGTTTGAATCGTTTTTGGTGGGCTCAGTT
TGCGCCCAATATGTACAATCTGGTCTGGGTGGTTTGGTGCTTGAGGCGCT
GGTGATTACGCTAGCCATATTCTCGGGTATTACGTTGTATGCTTTTGCTT
CCAAGAAAGACTTTTCTTTCATGGGAGGAGCTTTATATGCTGCGCTGATT
GGCCTTCTGGTCGCCTCTATCGTCAACCTCTTCATTGGTTTCACTGGCAA
CAAGAGCCCCCTCTTGGCAATGTTGATTTCATACGGAGGAGCTCTTTTGT
TCAGTCTTTACATCCTCTACGACAGTAAGTTCAACCGCGTTCAGAACGAA
GCAAAGCGAGCGTTGTTTTTTCGAGCACAGTATTTCTAACCCGTATTTCT
ACCTGTGTTGTATCGAACAGCTTCGATGATCATGCATCACCTTGGTCCCG
ACGACGCCATCATGGGCGCGATTATGCTATACTTGGATCTGTTGAATCTA
TTTTTGTACATCCTGGCAATCCTATCCAGAAACCGCGATTAG
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Coding sequence (CDS) from alignment at tig00000170_pilon:160885..161826-

>Ggra9866.t1 ID=Ggra9866.t1|Name=Ggra9866.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=846bp|location=Sequence derived from alignment at tig00000170_pilon:160885..161826- (Gracilaria gracilis GNS1m male)
ATGTCTGCCATGCGCGACTCCATCGACATGGAACCTCTTCGAGCCATGCC
ACGCGGTGCCGCCGACGCGTCGCGAAGTGTCAACAGGGAAGCTAAATCTG
CGCTTCCTGCTTCGAACAAAACTGGTTTCGGAGAAGACTACGCGAATGAC
TTTGCGTACGGTACCAGTGTGGCTACATGCGAACCTATCATTCGCCTAGG
CTTTATTCGCAAGGTTTACGGCATTCTAGCCGCTCAGCTTGCTCTCACCG
TCTTGATATGTTCCTTGTTTATGTACATTAAGCCGTTGCGTATGTTTGCA
ATTAACGCTAATGGTTTTCTTGCAATTGTTTCCATGATAGGTACTTTTGG
TACACTGTTCGCGCTTCTTGCTTTCAAAGACTCACATCCGACCAATATCC
AGCTGTTAGCCGCTTTTACCGTGTTTGAATCGTTTTTGGTGGGCTCAGTT
TGCGCCCAATATGTACAATCTGGTCTGGGTGGTTTGGTGCTTGAGGCGCT
GGTGATTACGCTAGCCATATTCTCGGGTATTACGTTGTATGCTTTTGCTT
CCAAGAAAGACTTTTCTTTCATGGGAGGAGCTTTATATGCTGCGCTGATT
GGCCTTCTGGTCGCCTCTATCGTCAACCTCTTCATTGGTTTCACTGGCAA
CAAGAGCCCCCTCTTGGCAATGTTGATTTCATACGGAGGAGCTCTTTTGT
TCAGTCTTTACATCCTCTACGACACTTCGATGATCATGCATCACCTTGGT
CCCGACGACGCCATCATGGGCGCGATTATGCTATACTTGGATCTGTTGAA
TCTATTTTTGTACATCCTGGCAATCCTATCCAGAAACCGCGATTAG
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