Ggra6216.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6216.t1
Unique NameGgra6216.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length383
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000167_piloncontigtig00000167_pilon:134823..136600 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog78898.MVEG_04145T0
PFAMsMutS_III,MutS_IV,MutS_V
Max annot lvl4751|Fungi
KEGG koko:K08741
GOsGO:0000003,GO:0000228,GO:0000280,GO:0000793,GO:0000794,GO:0000795,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007127,GO:0007129,GO:0007131,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0022414,GO:0022607,GO:0030983,GO:0031974,GO:0031981,GO:0033554,GO:0034641,GO:0035825,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045132,GO:0045143,GO:0046483,GO:0048285,GO:0050896,GO:0051026,GO:0051276,GO:0051321,GO:0051716,GO:0061982,GO:0070013,GO:0070192,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0098813,GO:0099086,GO:0140013,GO:1901360,GO:1901363,GO:1903046
Evalue1.07e-07
EggNOG OGsCOG0249@1|root,KOG0221@2759|Eukaryota,38FDG@33154|Opisthokonta,3NVR7@4751|Fungi,1GWMC@112252|Fungi incertae sedis
DescriptionDNA-binding domain of DNA mismatch repair MUTS family
COG categoryL
BRITEko00000,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6216Ggra6216Gracilaria gracilis GNS1m malegenetig00000167_pilon 134823..136600 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6216.t1Ggra6216.t1Gracilaria gracilis GNS1m malepolypeptidetig00000167_pilon 134823..136600 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6216.t1.start1Ggra6216.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000167_pilon 134823..134825 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6216.t1.CDS1Ggra6216.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000167_pilon 134823..134937 +
Ggra6216.t1.CDS2Ggra6216.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000167_pilon 135011..135065 +
Ggra6216.t1.CDS3Ggra6216.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000167_pilon 135177..135464 +
Ggra6216.t1.CDS4Ggra6216.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000167_pilon 135539..135689 +
Ggra6216.t1.CDS5Ggra6216.t1.CDS5Gracilaria gracilis GNS1m maleCDStig00000167_pilon 136061..136600 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6216.t1.exon1Ggra6216.t1.exon1Gracilaria gracilis GNS1m maleexontig00000167_pilon 134823..134937 +
Ggra6216.t1.exon2Ggra6216.t1.exon2Gracilaria gracilis GNS1m maleexontig00000167_pilon 135011..135065 +
Ggra6216.t1.exon3Ggra6216.t1.exon3Gracilaria gracilis GNS1m maleexontig00000167_pilon 135177..135464 +
Ggra6216.t1.exon4Ggra6216.t1.exon4Gracilaria gracilis GNS1m maleexontig00000167_pilon 135539..135689 +
Ggra6216.t1.exon5Ggra6216.t1.exon5Gracilaria gracilis GNS1m maleexontig00000167_pilon 136061..136600 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6216.t1.intron1Ggra6216.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000167_pilon 134938..135010 +
Ggra6216.t1.intron2Ggra6216.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000167_pilon 135066..135176 +
Ggra6216.t1.intron3Ggra6216.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000167_pilon 135465..135538 +
Ggra6216.t1.intron4Ggra6216.t1.intron4Gracilaria gracilis GNS1m maleintrontig00000167_pilon 135690..136060 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6216.t1.stop1Ggra6216.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000167_pilon 136598..136600 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6216.t1 ID=Ggra6216.t1|Name=Ggra6216.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=383bp
MAKVLRGGKWGSAPSTSNSRSEVPSRSQSERDADENSNEKGVLISFVEQK
KPIDVAVVSCAEDYHDASRIVSVHDQCFIILPKLYQDDDKLINAIRPNVV
PQTAREQYQMSRGSHDRPPKTRALLPLLSLIIPPPSSQVLNSALTKPRSS
ARCENAIIRAVGGLLSCILQQGVLGTLGGDSDEVRINAIFPKNYSNTMRM
SPIALKTAAQQDERLLQSSLITRALRINESKLREPARWIESAVDFEECEA
TGRMVAAAGFSAEIDDLKRPPSGLDDFLTKVGINELERMTESSHALQIRS
FHFKYEAQFGSLIVFPDRECEEIGIESFEEHCISFRFKSDDDGYHFKNKK
CYDLDEEIGDIRGTILELKEHASRYLEATMLD*
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spliced messenger RNA

>Ggra6216.t1 ID=Ggra6216.t1|Name=Ggra6216.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1149bp|location=Sequence derived from alignment at tig00000167_pilon:134823..136600+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAAAAGTTCTGCGAGGTGGAAAATGGGGATCTGCTCCATCTACATC
AAACTCTCGTTCAGAAGTTCCATCACGTTCGCAAAGTGAGAGAGATGCAG
ACGAAAACTCAAATGAGAAAGGAGTCCTCATCTCTTTTGTTGAGCAAAAG
AAGCCCATAGATGTTGCCGTGGTGTCTTGTGCTGAGGACTATCATGATGC
TTCCCGTATTGTTTCAGTGCATGACCAATGCTTTATCATCTTGCCGAAAT
TGTACCAGGATGATGACAAGTTGATCAATGCAATACGCCCAAACGTTGTG
CCTCAGACCGCGCGAGAGCAATATCAAATGTCGCGAGGCAGCCACGACCG
TCCACCGAAAACTCGGGCATTGTTACCGCTTCTGAGTCTGATAATTCCGC
CTCCTTCCTCCCAAGTACTGAATTCAGCCTTAACAAAGCCAAGGAGCTCT
GCTCGTTGTGAGAACGCCATTATCCGCGCTGTGGGTGGTCTTCTTTCGTG
TATTCTTCAACAAGGAGTCCTCGGTACATTAGGAGGTGACTCTGATGAAG
TTCGCATTAACGCTATCTTTCCAAAGAACTACAGCAACACGATGCGCATG
AGTCCAATTGCTCTGAAGACTGCTGCTCAGCAAGATGAAAGGCTTTTGCA
ATCTTCTCTCATCACCCGTGCTTTAAGGATCAATGAAAGCAAACTTCGTG
AACCAGCTAGGTGGATTGAGAGCGCTGTGGACTTCGAGGAATGTGAAGCA
ACTGGGAGAATGGTCGCCGCCGCAGGTTTCAGTGCGGAAATTGATGACTT
GAAACGTCCACCTAGCGGCCTAGACGACTTCCTTACGAAGGTTGGAATTA
ATGAGTTAGAAAGGATGACCGAGAGTAGCCACGCACTGCAAATCAGATCA
TTCCACTTCAAATATGAAGCACAATTTGGTTCTCTTATCGTATTTCCTGA
TCGTGAGTGTGAAGAAATCGGAATAGAAAGCTTTGAGGAACATTGTATCT
CTTTCAGGTTCAAGTCAGACGATGATGGTTATCACTTCAAGAATAAAAAA
TGTTACGACTTAGATGAAGAGATTGGCGATATTCGGGGAACAATTCTGGA
GCTCAAGGAACATGCAAGTCGGTATCTGGAAGCCACTATGTTAGACTGA
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protein sequence of Ggra6216.t1

>Ggra6216.t1 ID=Ggra6216.t1|Name=Ggra6216.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=383bp
MAKVLRGGKWGSAPSTSNSRSEVPSRSQSERDADENSNEKGVLISFVEQK
KPIDVAVVSCAEDYHDASRIVSVHDQCFIILPKLYQDDDKLINAIRPNVV
PQTAREQYQMSRGSHDRPPKTRALLPLLSLIIPPPSSQVLNSALTKPRSS
ARCENAIIRAVGGLLSCILQQGVLGTLGGDSDEVRINAIFPKNYSNTMRM
SPIALKTAAQQDERLLQSSLITRALRINESKLREPARWIESAVDFEECEA
TGRMVAAAGFSAEIDDLKRPPSGLDDFLTKVGINELERMTESSHALQIRS
FHFKYEAQFGSLIVFPDRECEEIGIESFEEHCISFRFKSDDDGYHFKNKK
CYDLDEEIGDIRGTILELKEHASRYLEATMLD*
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mRNA from alignment at tig00000167_pilon:134823..136600+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6216.t1 ID=Ggra6216.t1|Name=Ggra6216.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1778bp|location=Sequence derived from alignment at tig00000167_pilon:134823..136600+ (Gracilaria gracilis GNS1m male)
ATGGCAAAAGTTCTGCGAGGTGGAAAATGGGGATCTGCTCCATCTACATC
AAACTCTCGTTCAGAAGTTCCATCACGTTCGCAAAGTGAGAGAGATGCAG
ACGAAAACTCAAATGGTCAGTCTATTGAATCAAGTCTAGGCCCAAACGTT
AACTGCATTTGGCATCAAATATCTAACACCAGATGTAGAGAAAGGAGTCC
TCATCTCTTTTGTTGAGCAAAAGAAGCCCATAGATGTTGCCGTGTATGTT
CCTGCTGTCAACAGCGTTTTCATTTCAAGATTAGTTTGCTTGGCTTGCAT
TACCGACGCGTCGTAGATTTCTCCTAACCGTCTTCGATAATTCTGGGTTG
ATAGGGTGTCTTGTGCTGAGGACTATCATGATGCTTCCCGTATTGTTTCA
GTGCATGACCAATGCTTTATCATCTTGCCGAAATTGTACCAGGATGATGA
CAAGTTGATCAATGCAATACGCCCAAACGTTGTGCCTCAGACCGCGCGAG
AGCAATATCAAATGTCGCGAGGCAGCCACGACCGTCCACCGAAAACTCGG
GCATTGTTACCGCTTCTGAGTCTGATAATTCCGCCTCCTTCCTCCCAAGT
ACTGAATTCAGCCTTAACAAAGCCAAGGAGCTCTGCTCGTTGGTAAGCGT
GGGCGACATACCAAAGAATCGAACACCTGGATCTCGCTTTTTATACCTTT
CACATGTCATTGGCAGTGAGAACGCCATTATCCGCGCTGTGGGTGGTCTT
CTTTCGTGTATTCTTCAACAAGGAGTCCTCGGTACATTAGGAGGTGACTC
TGATGAAGTTCGCATTAACGCTATCTTTCCAAAGAACTACAGCAACACGA
TGCGCATGAGTCCAATTGTGAGCCAGAGTCTGCAAATTTTCAGTCACGAA
CTTCATCCTTTGGGTCGGGGGCGGCCTCCGAGGAAACGTGGTTCTGTCTT
TATTCGGAATCCTCAAGGATCATGTGAAGACAGCCGCCGGGGGACATATT
CTTCGATCTTGGCTGATGTACCCATCGAGTGATCTCGCTGAAATTCAAGA
CAGACAGCTTTGCGTGCAAATCTTACGAAACAACTCAAGACGCGATATAG
CTGACAACAATCAGAGATGCGCTAAGCGCAGTCAAAAATGTTGACGGGAT
AATGGGACGTGTTCAAAGGCATTCTAGGGGGACAACAGATTAGAAAGCTT
TGCACTCATCCACCTCATCATTTATCTTCATCATCTAGGCTCTGAAGACT
GCTGCTCAGCAAGATGAAAGGCTTTTGCAATCTTCTCTCATCACCCGTGC
TTTAAGGATCAATGAAAGCAAACTTCGTGAACCAGCTAGGTGGATTGAGA
GCGCTGTGGACTTCGAGGAATGTGAAGCAACTGGGAGAATGGTCGCCGCC
GCAGGTTTCAGTGCGGAAATTGATGACTTGAAACGTCCACCTAGCGGCCT
AGACGACTTCCTTACGAAGGTTGGAATTAATGAGTTAGAAAGGATGACCG
AGAGTAGCCACGCACTGCAAATCAGATCATTCCACTTCAAATATGAAGCA
CAATTTGGTTCTCTTATCGTATTTCCTGATCGTGAGTGTGAAGAAATCGG
AATAGAAAGCTTTGAGGAACATTGTATCTCTTTCAGGTTCAAGTCAGACG
ATGATGGTTATCACTTCAAGAATAAAAAATGTTACGACTTAGATGAAGAG
ATTGGCGATATTCGGGGAACAATTCTGGAGCTCAAGGAACATGCAAGTCG
GTATCTGGAAGCCACTATGTTAGACTGA
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Coding sequence (CDS) from alignment at tig00000167_pilon:134823..136600+

>Ggra6216.t1 ID=Ggra6216.t1|Name=Ggra6216.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1149bp|location=Sequence derived from alignment at tig00000167_pilon:134823..136600+ (Gracilaria gracilis GNS1m male)
ATGGCAAAAGTTCTGCGAGGTGGAAAATGGGGATCTGCTCCATCTACATC
AAACTCTCGTTCAGAAGTTCCATCACGTTCGCAAAGTGAGAGAGATGCAG
ACGAAAACTCAAATGAGAAAGGAGTCCTCATCTCTTTTGTTGAGCAAAAG
AAGCCCATAGATGTTGCCGTGGTGTCTTGTGCTGAGGACTATCATGATGC
TTCCCGTATTGTTTCAGTGCATGACCAATGCTTTATCATCTTGCCGAAAT
TGTACCAGGATGATGACAAGTTGATCAATGCAATACGCCCAAACGTTGTG
CCTCAGACCGCGCGAGAGCAATATCAAATGTCGCGAGGCAGCCACGACCG
TCCACCGAAAACTCGGGCATTGTTACCGCTTCTGAGTCTGATAATTCCGC
CTCCTTCCTCCCAAGTACTGAATTCAGCCTTAACAAAGCCAAGGAGCTCT
GCTCGTTGTGAGAACGCCATTATCCGCGCTGTGGGTGGTCTTCTTTCGTG
TATTCTTCAACAAGGAGTCCTCGGTACATTAGGAGGTGACTCTGATGAAG
TTCGCATTAACGCTATCTTTCCAAAGAACTACAGCAACACGATGCGCATG
AGTCCAATTGCTCTGAAGACTGCTGCTCAGCAAGATGAAAGGCTTTTGCA
ATCTTCTCTCATCACCCGTGCTTTAAGGATCAATGAAAGCAAACTTCGTG
AACCAGCTAGGTGGATTGAGAGCGCTGTGGACTTCGAGGAATGTGAAGCA
ACTGGGAGAATGGTCGCCGCCGCAGGTTTCAGTGCGGAAATTGATGACTT
GAAACGTCCACCTAGCGGCCTAGACGACTTCCTTACGAAGGTTGGAATTA
ATGAGTTAGAAAGGATGACCGAGAGTAGCCACGCACTGCAAATCAGATCA
TTCCACTTCAAATATGAAGCACAATTTGGTTCTCTTATCGTATTTCCTGA
TCGTGAGTGTGAAGAAATCGGAATAGAAAGCTTTGAGGAACATTGTATCT
CTTTCAGGTTCAAGTCAGACGATGATGGTTATCACTTCAAGAATAAAAAA
TGTTACGACTTAGATGAAGAGATTGGCGATATTCGGGGAACAATTCTGGA
GCTCAAGGAACATGCAAGTCGGTATCTGGAAGCCACTATGTTAGACTGA
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