Ggra6210.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6210.t1
Unique Name	Ggra6210.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	554

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000167_pilon	contig	tig00000167_pilon:51759..53420 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705677.1
PFAMs	DUF295,F-box,RHD3
Max annot lvl	2759\|Eukaryota
Evalue	3.53e-69
EggNOG OGs	KOG2203@1\|root,KOG2203@2759\|Eukaryota
Description	GTP binding
COG category	T

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6210	Ggra6210	Gracilaria gracilis GNS1m male	gene	tig00000167_pilon 51759..53420 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6210.t1.start1	Ggra6210.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000167_pilon 51759..51761 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6210.t1.CDS1	Ggra6210.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000167_pilon 51759..53420 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6210.t1.exon1	Ggra6210.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000167_pilon 51759..53420 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6210.t1.stop1	Ggra6210.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000167_pilon 53418..53420 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6210.t1	Ggra6210.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000167_pilon 51759..53420 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000167_pilon:51759..53420+
coding sequence from alignment at tig00000167_pilon:51759..53420+

mRNA sequence

>Ggra6210.t1 ID=Ggra6210.t1|Name=Ggra6210.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=554bp
MSADATVLVSADGVLDTAPLKTLEEENDSTITKLIALGAHNLQQPQLLDQ
LFGTKFSKASKQGITASLVQGDDSAVLNGSPHDLFILNLEPFDGPDRSRD
EQRERARHLALALSDALLFLVRMHDLPRVQTNGIATLQGSLTQMLMLQAD
GVVEPLTGKRAFIVVVKDYESDVLSRQEVINGFLQEMQTVYKNVAKPPRS
PHLVTEVFEFEFLLLPNENLKPLEYQEAMADVRTRFMDPFADNYLFEGGK
YSREPNASESEIAENAWKKLDVNQTADIPPMKDLMSTFDCDNAMRKVFEK
YRRSVRVWRQDADGGVIIDKFGSCASDMVKETVSAYERDAAPHKGSKAFK
RKRAELRDLLDADLYNLFVVQIAKLREVTYSEFKDKLASFGDSEPRLERS
VNGAVKEFQKEFKTKAEALQPGFSSWRYDNDAKELANQMREDATERLQRA
RIADYQESGMRRNRRRRPAIGGIGGRKQRQPINFSIHYLDPAPFGWKDSR
YEKLNEDDDIEFHGGSPLALGSGKGGGLSVPLEPPKNSAWQQRNRDFIYT
ERR*

spliced messenger RNA

>Ggra6210.t1 ID=Ggra6210.t1|Name=Ggra6210.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1662bp|location=Sequence derived from alignment at tig00000167_pilon:51759..53420+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTGCGGATGCGACCGTCCTGGTCTCGGCAGATGGCGTGTTGGATAC
CGCCCCACTTAAGACACTCGAAGAAGAAAACGATTCAACAATCACCAAGC
TAATCGCCCTTGGAGCTCACAACCTGCAGCAACCACAGCTTCTCGATCAG
CTTTTCGGCACCAAGTTTTCGAAAGCAAGTAAACAAGGCATTACCGCATC
CCTTGTGCAAGGGGACGACTCTGCTGTTTTGAATGGTTCCCCTCATGATC
TCTTCATACTTAATTTGGAACCTTTCGATGGCCCAGATCGCAGTCGCGAC
GAACAGCGGGAGCGAGCTCGTCATCTCGCGTTGGCTCTTTCAGATGCCCT
TCTTTTTTTAGTTCGAATGCACGATCTACCCCGCGTGCAAACTAATGGCA
TCGCAACTCTGCAGGGCAGTTTGACTCAGATGCTCATGTTACAAGCCGAT
GGTGTTGTCGAGCCATTGACAGGTAAACGAGCGTTTATCGTCGTCGTGAA
AGACTATGAGTCAGACGTTCTGTCTAGACAAGAAGTAATTAACGGTTTCT
TGCAAGAAATGCAAACCGTCTACAAGAATGTCGCCAAACCACCAAGATCC
CCTCATTTGGTCACCGAAGTGTTCGAGTTTGAATTTTTGCTGCTTCCCAA
TGAGAATTTGAAGCCTTTAGAGTACCAGGAGGCTATGGCAGATGTGCGTA
CTCGATTCATGGACCCGTTTGCAGATAATTATTTGTTTGAAGGCGGCAAG
TACTCCCGGGAACCAAATGCATCCGAATCAGAGATTGCTGAGAATGCTTG
GAAGAAGTTGGATGTCAATCAAACTGCTGATATTCCACCTATGAAGGATT
TGATGTCTACATTCGATTGTGATAACGCCATGAGAAAAGTGTTTGAGAAA
TATCGCAGGAGCGTGCGGGTCTGGAGACAAGATGCAGATGGTGGAGTAAT
AATCGACAAATTCGGTTCATGTGCATCTGACATGGTTAAAGAAACCGTAT
CCGCGTACGAGCGAGATGCAGCTCCACACAAAGGTTCTAAAGCGTTCAAG
CGAAAGAGGGCTGAACTCAGAGATCTTCTTGATGCCGACCTCTACAATTT
GTTTGTTGTGCAAATAGCGAAATTGAGAGAGGTGACGTACAGCGAGTTCA
AGGATAAACTTGCCTCATTTGGGGATTCAGAGCCGCGTTTGGAGCGATCT
GTGAATGGTGCAGTAAAAGAGTTCCAAAAGGAATTCAAGACTAAGGCGGA
AGCGCTGCAACCCGGATTTTCATCATGGCGTTATGACAACGATGCTAAGG
AGCTGGCGAACCAGATGCGAGAAGACGCAACGGAACGCTTGCAGCGTGCT
CGCATTGCTGATTACCAAGAAAGTGGTATGCGACGTAATCGAAGACGTAG
ACCGGCCATCGGAGGTATTGGGGGAAGAAAACAGAGGCAACCAATCAATT
TTAGCATTCACTATCTTGATCCCGCGCCATTTGGATGGAAAGACTCTCGG
TATGAGAAACTTAACGAGGATGATGACATTGAATTTCATGGCGGTAGTCC
TCTTGCACTTGGATCTGGAAAAGGAGGTGGACTTTCAGTTCCTTTGGAGC
CACCAAAGAATTCTGCTTGGCAGCAGAGAAACCGGGATTTCATCTACACT
GAACGTAGATGA

protein sequence of Ggra6210.t1

>Ggra6210.t1 ID=Ggra6210.t1|Name=Ggra6210.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=554bp
MSADATVLVSADGVLDTAPLKTLEEENDSTITKLIALGAHNLQQPQLLDQ
LFGTKFSKASKQGITASLVQGDDSAVLNGSPHDLFILNLEPFDGPDRSRD
EQRERARHLALALSDALLFLVRMHDLPRVQTNGIATLQGSLTQMLMLQAD
GVVEPLTGKRAFIVVVKDYESDVLSRQEVINGFLQEMQTVYKNVAKPPRS
PHLVTEVFEFEFLLLPNENLKPLEYQEAMADVRTRFMDPFADNYLFEGGK
YSREPNASESEIAENAWKKLDVNQTADIPPMKDLMSTFDCDNAMRKVFEK
YRRSVRVWRQDADGGVIIDKFGSCASDMVKETVSAYERDAAPHKGSKAFK
RKRAELRDLLDADLYNLFVVQIAKLREVTYSEFKDKLASFGDSEPRLERS
VNGAVKEFQKEFKTKAEALQPGFSSWRYDNDAKELANQMREDATERLQRA
RIADYQESGMRRNRRRRPAIGGIGGRKQRQPINFSIHYLDPAPFGWKDSR
YEKLNEDDDIEFHGGSPLALGSGKGGGLSVPLEPPKNSAWQQRNRDFIYT
ERR*

mRNA from alignment at tig00000167_pilon:51759..53420+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6210.t1 ID=Ggra6210.t1|Name=Ggra6210.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1662bp|location=Sequence derived from alignment at tig00000167_pilon:51759..53420+ (Gracilaria gracilis GNS1m male)
ATGAGTGCGGATGCGACCGTCCTGGTCTCGGCAGATGGCGTGTTGGATAC
CGCCCCACTTAAGACACTCGAAGAAGAAAACGATTCAACAATCACCAAGC
TAATCGCCCTTGGAGCTCACAACCTGCAGCAACCACAGCTTCTCGATCAG
CTTTTCGGCACCAAGTTTTCGAAAGCAAGTAAACAAGGCATTACCGCATC
CCTTGTGCAAGGGGACGACTCTGCTGTTTTGAATGGTTCCCCTCATGATC
TCTTCATACTTAATTTGGAACCTTTCGATGGCCCAGATCGCAGTCGCGAC
GAACAGCGGGAGCGAGCTCGTCATCTCGCGTTGGCTCTTTCAGATGCCCT
TCTTTTTTTAGTTCGAATGCACGATCTACCCCGCGTGCAAACTAATGGCA
TCGCAACTCTGCAGGGCAGTTTGACTCAGATGCTCATGTTACAAGCCGAT
GGTGTTGTCGAGCCATTGACAGGTAAACGAGCGTTTATCGTCGTCGTGAA
AGACTATGAGTCAGACGTTCTGTCTAGACAAGAAGTAATTAACGGTTTCT
TGCAAGAAATGCAAACCGTCTACAAGAATGTCGCCAAACCACCAAGATCC
CCTCATTTGGTCACCGAAGTGTTCGAGTTTGAATTTTTGCTGCTTCCCAA
TGAGAATTTGAAGCCTTTAGAGTACCAGGAGGCTATGGCAGATGTGCGTA
CTCGATTCATGGACCCGTTTGCAGATAATTATTTGTTTGAAGGCGGCAAG
TACTCCCGGGAACCAAATGCATCCGAATCAGAGATTGCTGAGAATGCTTG
GAAGAAGTTGGATGTCAATCAAACTGCTGATATTCCACCTATGAAGGATT
TGATGTCTACATTCGATTGTGATAACGCCATGAGAAAAGTGTTTGAGAAA
TATCGCAGGAGCGTGCGGGTCTGGAGACAAGATGCAGATGGTGGAGTAAT
AATCGACAAATTCGGTTCATGTGCATCTGACATGGTTAAAGAAACCGTAT
CCGCGTACGAGCGAGATGCAGCTCCACACAAAGGTTCTAAAGCGTTCAAG
CGAAAGAGGGCTGAACTCAGAGATCTTCTTGATGCCGACCTCTACAATTT
GTTTGTTGTGCAAATAGCGAAATTGAGAGAGGTGACGTACAGCGAGTTCA
AGGATAAACTTGCCTCATTTGGGGATTCAGAGCCGCGTTTGGAGCGATCT
GTGAATGGTGCAGTAAAAGAGTTCCAAAAGGAATTCAAGACTAAGGCGGA
AGCGCTGCAACCCGGATTTTCATCATGGCGTTATGACAACGATGCTAAGG
AGCTGGCGAACCAGATGCGAGAAGACGCAACGGAACGCTTGCAGCGTGCT
CGCATTGCTGATTACCAAGAAAGTGGTATGCGACGTAATCGAAGACGTAG
ACCGGCCATCGGAGGTATTGGGGGAAGAAAACAGAGGCAACCAATCAATT
TTAGCATTCACTATCTTGATCCCGCGCCATTTGGATGGAAAGACTCTCGG
TATGAGAAACTTAACGAGGATGATGACATTGAATTTCATGGCGGTAGTCC
TCTTGCACTTGGATCTGGAAAAGGAGGTGGACTTTCAGTTCCTTTGGAGC
CACCAAAGAATTCTGCTTGGCAGCAGAGAAACCGGGATTTCATCTACACT
GAACGTAGATGA

Coding sequence (CDS) from alignment at tig00000167_pilon:51759..53420+

>Ggra6210.t1 ID=Ggra6210.t1|Name=Ggra6210.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1662bp|location=Sequence derived from alignment at tig00000167_pilon:51759..53420+ (Gracilaria gracilis GNS1m male)
ATGAGTGCGGATGCGACCGTCCTGGTCTCGGCAGATGGCGTGTTGGATAC
CGCCCCACTTAAGACACTCGAAGAAGAAAACGATTCAACAATCACCAAGC
TAATCGCCCTTGGAGCTCACAACCTGCAGCAACCACAGCTTCTCGATCAG
CTTTTCGGCACCAAGTTTTCGAAAGCAAGTAAACAAGGCATTACCGCATC
CCTTGTGCAAGGGGACGACTCTGCTGTTTTGAATGGTTCCCCTCATGATC
TCTTCATACTTAATTTGGAACCTTTCGATGGCCCAGATCGCAGTCGCGAC
GAACAGCGGGAGCGAGCTCGTCATCTCGCGTTGGCTCTTTCAGATGCCCT
TCTTTTTTTAGTTCGAATGCACGATCTACCCCGCGTGCAAACTAATGGCA
TCGCAACTCTGCAGGGCAGTTTGACTCAGATGCTCATGTTACAAGCCGAT
GGTGTTGTCGAGCCATTGACAGGTAAACGAGCGTTTATCGTCGTCGTGAA
AGACTATGAGTCAGACGTTCTGTCTAGACAAGAAGTAATTAACGGTTTCT
TGCAAGAAATGCAAACCGTCTACAAGAATGTCGCCAAACCACCAAGATCC
CCTCATTTGGTCACCGAAGTGTTCGAGTTTGAATTTTTGCTGCTTCCCAA
TGAGAATTTGAAGCCTTTAGAGTACCAGGAGGCTATGGCAGATGTGCGTA
CTCGATTCATGGACCCGTTTGCAGATAATTATTTGTTTGAAGGCGGCAAG
TACTCCCGGGAACCAAATGCATCCGAATCAGAGATTGCTGAGAATGCTTG
GAAGAAGTTGGATGTCAATCAAACTGCTGATATTCCACCTATGAAGGATT
TGATGTCTACATTCGATTGTGATAACGCCATGAGAAAAGTGTTTGAGAAA
TATCGCAGGAGCGTGCGGGTCTGGAGACAAGATGCAGATGGTGGAGTAAT
AATCGACAAATTCGGTTCATGTGCATCTGACATGGTTAAAGAAACCGTAT
CCGCGTACGAGCGAGATGCAGCTCCACACAAAGGTTCTAAAGCGTTCAAG
CGAAAGAGGGCTGAACTCAGAGATCTTCTTGATGCCGACCTCTACAATTT
GTTTGTTGTGCAAATAGCGAAATTGAGAGAGGTGACGTACAGCGAGTTCA
AGGATAAACTTGCCTCATTTGGGGATTCAGAGCCGCGTTTGGAGCGATCT
GTGAATGGTGCAGTAAAAGAGTTCCAAAAGGAATTCAAGACTAAGGCGGA
AGCGCTGCAACCCGGATTTTCATCATGGCGTTATGACAACGATGCTAAGG
AGCTGGCGAACCAGATGCGAGAAGACGCAACGGAACGCTTGCAGCGTGCT
CGCATTGCTGATTACCAAGAAAGTGGTATGCGACGTAATCGAAGACGTAG
ACCGGCCATCGGAGGTATTGGGGGAAGAAAACAGAGGCAACCAATCAATT
TTAGCATTCACTATCTTGATCCCGCGCCATTTGGATGGAAAGACTCTCGG
TATGAGAAACTTAACGAGGATGATGACATTGAATTTCATGGCGGTAGTCC
TCTTGCACTTGGATCTGGAAAAGGAGGTGGACTTTCAGTTCCTTTGGAGC
CACCAAAGAATTCTGCTTGGCAGCAGAGAAACCGGGATTTCATCTACACT
GAACGTAGATGA