Ggra4977.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4977.t1
Unique NameGgra4977.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length338
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000014_piloncontigtig00000014_pilon:224176..225189 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX41608
PFAMsEF_TS
Max annot lvl2759|Eukaryota
KEGG koko:K02357
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003746,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006412,GO:0006414,GO:0006518,GO:0006807,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0019538,GO:0031974,GO:0032543,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0070125,GO:0071704,GO:0097159,GO:0140053,GO:1901363,GO:1901564,GO:1901566,GO:1901576
Evalue2.79e-55
EggNOG OGsCOG0264@1|root,KOG1071@2759|Eukaryota
Descriptiontranslation elongation factor activity
COG categoryJ
BRITEko00000,ko03012,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4977Ggra4977Gracilaria gracilis GNS1m malegenetig00000014_pilon 224176..225189 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4977.t1.start1Ggra4977.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000014_pilon 224176..224178 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4977.t1.CDS1Ggra4977.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000014_pilon 224176..225189 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4977.t1.exon1Ggra4977.t1.exon1Gracilaria gracilis GNS1m maleexontig00000014_pilon 224176..225189 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4977.t1.stop1Ggra4977.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000014_pilon 225187..225189 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4977.t1Ggra4977.t1Gracilaria gracilis GNS1m malepolypeptidetig00000014_pilon 224176..225189 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4977.t1 ID=Ggra4977.t1|Name=Ggra4977.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=338bp
MLSPLIHQRQWLNVISHPSFKFRCCSAAARPIPLNPPVSTAAIKELRART
GAPIVAVKQALEEQGGDVEAAIEHLRKLGASMIAKKAHREASEGLVSIAI
SSDKRRAAIVELNSETDFVARTPQFGELVRSVADTALLMKSEQLSSIIPL
DPGSLLQGSNQDLLSHAVSSLGENIVLKRASLLQLSDQHGSVYGYVHRPI
GRGSGKIGVLVALEGSDVEDIGHRLAMHIAAAAPTYHNVESVPEYDIEKE
KSVLLEATKASQKGGNPKPPEILERIVNGKIKKWFTEVVLQEQEMLVEDE
NYQGKPRSVSAAVRAASKEAIVHGFLRFSVGDKVDAI*
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spliced messenger RNA

>Ggra4977.t1 ID=Ggra4977.t1|Name=Ggra4977.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1014bp|location=Sequence derived from alignment at tig00000014_pilon:224176..225189+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTATCTCCTCTAATACATCAGAGACAATGGCTAAATGTAATATCCCA
CCCTTCTTTCAAGTTTCGTTGCTGTTCTGCTGCGGCTCGCCCGATACCAC
TAAATCCACCAGTATCCACAGCTGCAATAAAAGAACTACGAGCTCGAACT
GGCGCTCCTATCGTCGCTGTGAAGCAGGCGTTAGAGGAACAAGGGGGTGA
CGTCGAGGCTGCTATAGAACATTTGCGGAAGTTGGGAGCCAGTATGATCG
CTAAGAAGGCCCATAGAGAGGCATCGGAAGGGCTTGTATCAATAGCCATA
TCTTCGGATAAACGAAGAGCAGCTATAGTTGAACTCAACTCAGAGACAGA
CTTTGTTGCTCGTACGCCTCAGTTTGGTGAGCTCGTTCGATCTGTTGCAG
ACACAGCTCTTTTGATGAAATCAGAGCAGTTATCATCAATAATCCCACTG
GATCCTGGGAGTCTGCTTCAGGGAAGCAACCAAGATTTACTTTCACATGC
TGTTTCGTCTCTCGGGGAAAATATTGTTCTGAAACGGGCTTCTCTACTTC
AACTTTCTGATCAACATGGGTCTGTATATGGATACGTACATCGCCCTATT
GGCAGGGGCAGTGGAAAGATTGGTGTCCTAGTCGCTCTGGAAGGTTCAGA
CGTAGAAGACATTGGGCACCGCCTAGCGATGCACATAGCAGCGGCCGCTC
CGACCTATCATAATGTCGAAAGTGTTCCAGAATATGACATTGAGAAAGAA
AAGTCGGTTCTACTGGAAGCTACAAAGGCAAGTCAAAAAGGAGGCAATCC
GAAGCCTCCTGAAATATTGGAGCGGATCGTAAATGGAAAGATTAAGAAAT
GGTTCACCGAAGTTGTTTTGCAAGAGCAAGAAATGCTGGTTGAAGATGAA
AATTATCAAGGAAAGCCACGATCCGTATCAGCAGCCGTCAGAGCAGCGTC
GAAAGAGGCAATCGTACATGGTTTCCTCAGGTTCTCTGTTGGAGACAAGG
TTGATGCCATCTAA
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protein sequence of Ggra4977.t1

>Ggra4977.t1 ID=Ggra4977.t1|Name=Ggra4977.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=338bp
MLSPLIHQRQWLNVISHPSFKFRCCSAAARPIPLNPPVSTAAIKELRART
GAPIVAVKQALEEQGGDVEAAIEHLRKLGASMIAKKAHREASEGLVSIAI
SSDKRRAAIVELNSETDFVARTPQFGELVRSVADTALLMKSEQLSSIIPL
DPGSLLQGSNQDLLSHAVSSLGENIVLKRASLLQLSDQHGSVYGYVHRPI
GRGSGKIGVLVALEGSDVEDIGHRLAMHIAAAAPTYHNVESVPEYDIEKE
KSVLLEATKASQKGGNPKPPEILERIVNGKIKKWFTEVVLQEQEMLVEDE
NYQGKPRSVSAAVRAASKEAIVHGFLRFSVGDKVDAI*
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mRNA from alignment at tig00000014_pilon:224176..225189+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4977.t1 ID=Ggra4977.t1|Name=Ggra4977.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1014bp|location=Sequence derived from alignment at tig00000014_pilon:224176..225189+ (Gracilaria gracilis GNS1m male)
ATGCTATCTCCTCTAATACATCAGAGACAATGGCTAAATGTAATATCCCA
CCCTTCTTTCAAGTTTCGTTGCTGTTCTGCTGCGGCTCGCCCGATACCAC
TAAATCCACCAGTATCCACAGCTGCAATAAAAGAACTACGAGCTCGAACT
GGCGCTCCTATCGTCGCTGTGAAGCAGGCGTTAGAGGAACAAGGGGGTGA
CGTCGAGGCTGCTATAGAACATTTGCGGAAGTTGGGAGCCAGTATGATCG
CTAAGAAGGCCCATAGAGAGGCATCGGAAGGGCTTGTATCAATAGCCATA
TCTTCGGATAAACGAAGAGCAGCTATAGTTGAACTCAACTCAGAGACAGA
CTTTGTTGCTCGTACGCCTCAGTTTGGTGAGCTCGTTCGATCTGTTGCAG
ACACAGCTCTTTTGATGAAATCAGAGCAGTTATCATCAATAATCCCACTG
GATCCTGGGAGTCTGCTTCAGGGAAGCAACCAAGATTTACTTTCACATGC
TGTTTCGTCTCTCGGGGAAAATATTGTTCTGAAACGGGCTTCTCTACTTC
AACTTTCTGATCAACATGGGTCTGTATATGGATACGTACATCGCCCTATT
GGCAGGGGCAGTGGAAAGATTGGTGTCCTAGTCGCTCTGGAAGGTTCAGA
CGTAGAAGACATTGGGCACCGCCTAGCGATGCACATAGCAGCGGCCGCTC
CGACCTATCATAATGTCGAAAGTGTTCCAGAATATGACATTGAGAAAGAA
AAGTCGGTTCTACTGGAAGCTACAAAGGCAAGTCAAAAAGGAGGCAATCC
GAAGCCTCCTGAAATATTGGAGCGGATCGTAAATGGAAAGATTAAGAAAT
GGTTCACCGAAGTTGTTTTGCAAGAGCAAGAAATGCTGGTTGAAGATGAA
AATTATCAAGGAAAGCCACGATCCGTATCAGCAGCCGTCAGAGCAGCGTC
GAAAGAGGCAATCGTACATGGTTTCCTCAGGTTCTCTGTTGGAGACAAGG
TTGATGCCATCTAA
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Coding sequence (CDS) from alignment at tig00000014_pilon:224176..225189+

>Ggra4977.t1 ID=Ggra4977.t1|Name=Ggra4977.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1014bp|location=Sequence derived from alignment at tig00000014_pilon:224176..225189+ (Gracilaria gracilis GNS1m male)
ATGCTATCTCCTCTAATACATCAGAGACAATGGCTAAATGTAATATCCCA
CCCTTCTTTCAAGTTTCGTTGCTGTTCTGCTGCGGCTCGCCCGATACCAC
TAAATCCACCAGTATCCACAGCTGCAATAAAAGAACTACGAGCTCGAACT
GGCGCTCCTATCGTCGCTGTGAAGCAGGCGTTAGAGGAACAAGGGGGTGA
CGTCGAGGCTGCTATAGAACATTTGCGGAAGTTGGGAGCCAGTATGATCG
CTAAGAAGGCCCATAGAGAGGCATCGGAAGGGCTTGTATCAATAGCCATA
TCTTCGGATAAACGAAGAGCAGCTATAGTTGAACTCAACTCAGAGACAGA
CTTTGTTGCTCGTACGCCTCAGTTTGGTGAGCTCGTTCGATCTGTTGCAG
ACACAGCTCTTTTGATGAAATCAGAGCAGTTATCATCAATAATCCCACTG
GATCCTGGGAGTCTGCTTCAGGGAAGCAACCAAGATTTACTTTCACATGC
TGTTTCGTCTCTCGGGGAAAATATTGTTCTGAAACGGGCTTCTCTACTTC
AACTTTCTGATCAACATGGGTCTGTATATGGATACGTACATCGCCCTATT
GGCAGGGGCAGTGGAAAGATTGGTGTCCTAGTCGCTCTGGAAGGTTCAGA
CGTAGAAGACATTGGGCACCGCCTAGCGATGCACATAGCAGCGGCCGCTC
CGACCTATCATAATGTCGAAAGTGTTCCAGAATATGACATTGAGAAAGAA
AAGTCGGTTCTACTGGAAGCTACAAAGGCAAGTCAAAAAGGAGGCAATCC
GAAGCCTCCTGAAATATTGGAGCGGATCGTAAATGGAAAGATTAAGAAAT
GGTTCACCGAAGTTGTTTTGCAAGAGCAAGAAATGCTGGTTGAAGATGAA
AATTATCAAGGAAAGCCACGATCCGTATCAGCAGCCGTCAGAGCAGCGTC
GAAAGAGGCAATCGTACATGGTTTCCTCAGGTTCTCTGTTGGAGACAAGG
TTGATGCCATCTAA
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