Ggra6224.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6224.t1
Unique NameGgra6224.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length180
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000167_piloncontigtig00000167_pilon:216257..216796 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog72019.SARC_11857T0
PFAMszf-MYND
Max annot lvl2759|Eukaryota
Evalue1.37e-06
EggNOG OGs2A8AQ@1|root,2RYG3@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6224Ggra6224Gracilaria gracilis GNS1m malegenetig00000167_pilon 216257..216796 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6224.t1.start1Ggra6224.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000167_pilon 216257..216259 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6224.t1.CDS1Ggra6224.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000167_pilon 216257..216796 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6224.t1.exon1Ggra6224.t1.exon1Gracilaria gracilis GNS1m maleexontig00000167_pilon 216257..216796 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6224.t1.stop1Ggra6224.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000167_pilon 216794..216796 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6224.t1Ggra6224.t1Gracilaria gracilis GNS1m malepolypeptidetig00000167_pilon 216257..216796 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6224.t1 ID=Ggra6224.t1|Name=Ggra6224.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=180bp
MLRNWNKGELNQSRMAPISSSSQKQYLESVTPALCEVYFVRFRFSGLIEH
RTCRYEVAPLLEKLLENILDMLHRLADRFSLSLCIPFTVLRLNKYALCVA
FITNFIRNGLPLTNIEYVYVLFTLDDWLNYSADRYADIFDALPEVVPYSV
RVPFLVALYLVKLRIMANYEANHRRMSVF*
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spliced messenger RNA

>Ggra6224.t1 ID=Ggra6224.t1|Name=Ggra6224.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=540bp|location=Sequence derived from alignment at tig00000167_pilon:216257..216796+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGCGTAACTGGAACAAGGGCGAATTGAATCAGTCGCGTATGGCGCC
CATTTCATCGAGCAGTCAAAAGCAATATCTCGAAAGCGTGACACCCGCAC
TGTGCGAGGTTTATTTCGTGCGCTTCCGGTTTTCCGGACTGATAGAGCAC
AGGACATGCCGCTACGAGGTGGCACCACTGCTGGAAAAGCTTCTTGAAAA
TATTCTCGATATGTTGCATCGTCTCGCCGACCGCTTCAGCCTCAGCCTGT
GCATCCCGTTCACGGTACTACGTCTTAACAAGTACGCGCTCTGTGTGGCA
TTCATTACCAATTTCATTCGCAATGGTCTTCCACTTACCAACATAGAGTA
TGTGTACGTATTGTTCACGCTGGATGATTGGTTGAACTACTCTGCCGATC
GCTACGCCGACATATTTGACGCCTTGCCTGAGGTAGTGCCATATTCTGTG
CGGGTGCCGTTTCTCGTGGCGCTGTACCTCGTCAAGCTACGAATCATGGC
TAACTACGAAGCGAATCATCGGCGCATGAGTGTCTTTTGA
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protein sequence of Ggra6224.t1

>Ggra6224.t1 ID=Ggra6224.t1|Name=Ggra6224.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=180bp
MLRNWNKGELNQSRMAPISSSSQKQYLESVTPALCEVYFVRFRFSGLIEH
RTCRYEVAPLLEKLLENILDMLHRLADRFSLSLCIPFTVLRLNKYALCVA
FITNFIRNGLPLTNIEYVYVLFTLDDWLNYSADRYADIFDALPEVVPYSV
RVPFLVALYLVKLRIMANYEANHRRMSVF*
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mRNA from alignment at tig00000167_pilon:216257..216796+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6224.t1 ID=Ggra6224.t1|Name=Ggra6224.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=540bp|location=Sequence derived from alignment at tig00000167_pilon:216257..216796+ (Gracilaria gracilis GNS1m male)
ATGTTGCGTAACTGGAACAAGGGCGAATTGAATCAGTCGCGTATGGCGCC
CATTTCATCGAGCAGTCAAAAGCAATATCTCGAAAGCGTGACACCCGCAC
TGTGCGAGGTTTATTTCGTGCGCTTCCGGTTTTCCGGACTGATAGAGCAC
AGGACATGCCGCTACGAGGTGGCACCACTGCTGGAAAAGCTTCTTGAAAA
TATTCTCGATATGTTGCATCGTCTCGCCGACCGCTTCAGCCTCAGCCTGT
GCATCCCGTTCACGGTACTACGTCTTAACAAGTACGCGCTCTGTGTGGCA
TTCATTACCAATTTCATTCGCAATGGTCTTCCACTTACCAACATAGAGTA
TGTGTACGTATTGTTCACGCTGGATGATTGGTTGAACTACTCTGCCGATC
GCTACGCCGACATATTTGACGCCTTGCCTGAGGTAGTGCCATATTCTGTG
CGGGTGCCGTTTCTCGTGGCGCTGTACCTCGTCAAGCTACGAATCATGGC
TAACTACGAAGCGAATCATCGGCGCATGAGTGTCTTTTGA
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Coding sequence (CDS) from alignment at tig00000167_pilon:216257..216796+

>Ggra6224.t1 ID=Ggra6224.t1|Name=Ggra6224.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=540bp|location=Sequence derived from alignment at tig00000167_pilon:216257..216796+ (Gracilaria gracilis GNS1m male)
ATGTTGCGTAACTGGAACAAGGGCGAATTGAATCAGTCGCGTATGGCGCC
CATTTCATCGAGCAGTCAAAAGCAATATCTCGAAAGCGTGACACCCGCAC
TGTGCGAGGTTTATTTCGTGCGCTTCCGGTTTTCCGGACTGATAGAGCAC
AGGACATGCCGCTACGAGGTGGCACCACTGCTGGAAAAGCTTCTTGAAAA
TATTCTCGATATGTTGCATCGTCTCGCCGACCGCTTCAGCCTCAGCCTGT
GCATCCCGTTCACGGTACTACGTCTTAACAAGTACGCGCTCTGTGTGGCA
TTCATTACCAATTTCATTCGCAATGGTCTTCCACTTACCAACATAGAGTA
TGTGTACGTATTGTTCACGCTGGATGATTGGTTGAACTACTCTGCCGATC
GCTACGCCGACATATTTGACGCCTTGCCTGAGGTAGTGCCATATTCTGTG
CGGGTGCCGTTTCTCGTGGCGCTGTACCTCGTCAAGCTACGAATCATGGC
TAACTACGAAGCGAATCATCGGCGCATGAGTGTCTTTTGA
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