Ggra9816.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9816.t1
Unique NameGgra9816.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length371
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000160_piloncontigtig00000160_pilon:12050..13615 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9816Ggra9816Gracilaria gracilis GNS1m malegenetig00000160_pilon 12050..13615 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9816.t1Ggra9816.t1Gracilaria gracilis GNS1m malepolypeptidetig00000160_pilon 12050..13615 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9816.t1.stop1Ggra9816.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000160_pilon 12050..12052 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9816.t1.CDS1Ggra9816.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000160_pilon 12050..12172 -
Ggra9816.t1.CDS2Ggra9816.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000160_pilon 12626..13615 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9816.t1.exon1Ggra9816.t1.exon1Gracilaria gracilis GNS1m maleexontig00000160_pilon 12050..12172 -
Ggra9816.t1.exon2Ggra9816.t1.exon2Gracilaria gracilis GNS1m maleexontig00000160_pilon 12626..13615 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9816.t1.intron1Ggra9816.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000160_pilon 12173..12625 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9816.t1.start1Ggra9816.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000160_pilon 13613..13615 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9816.t1 ID=Ggra9816.t1|Name=Ggra9816.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=371bp
MGLSLHEIERGIGLDLLRRPIITAFLNACLLRIFTDLFLYTGDDDEDDDD
DDDDDDDIDDQEGARMRSFAKDAWQRKCVDSGLSEKGAALAVVLLAQLIR
VLGLAETLAWTFIALLFSTLKLPRVYAFEKLLLDLAVILYRPSVRYVNKR
IRFECGGQHGVPRLHASRHGFGVFAVTIITSVESLSRDSSALLHLLRYMN
YTTVTYWREDALVMVGGNRHVERALCGACRERTVIDLGWHKDVFECTNFR
VEAVFAPEGGAAATAEAVSVPVEAEGKAETEGKAAAEVGTAADASSVRLV
GKRAVAVELSAPFGGESVELAVKSMGQFAARLVLGAAESDGVATVLAVER
VRNLKRLPPSGAAAVVRRLG*
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spliced messenger RNA

>Ggra9816.t1 ID=Ggra9816.t1|Name=Ggra9816.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1113bp|location=Sequence derived from alignment at tig00000160_pilon:12050..13615- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGACTCAGCCTGCACGAAATCGAGCGAGGCATCGGCCTCGATCTGCT
GCGCCGCCCCATCATCACCGCTTTTCTCAACGCCTGCCTGCTGCGCATCT
TCACCGACTTGTTCCTCTACACTGGCGACGACGACGAAGATGACGACGAC
GACGACGATGACGACGATGACATCGACGATCAAGAAGGCGCGCGCATGCG
CAGCTTCGCCAAGGACGCTTGGCAGCGCAAGTGCGTCGACAGCGGGCTGT
CCGAGAAGGGCGCCGCGCTGGCCGTGGTGCTACTGGCGCAGCTGATACGC
GTGCTGGGACTGGCCGAGACACTGGCATGGACGTTCATCGCGCTGCTGTT
CAGCACGCTCAAGCTGCCGCGCGTGTACGCGTTCGAGAAGCTGCTACTGG
ATCTGGCGGTCATTCTGTACCGTCCGTCCGTGCGCTACGTCAACAAGCGC
ATCCGCTTCGAGTGCGGTGGTCAGCACGGCGTGCCACGGCTGCACGCCAG
CCGCCACGGCTTTGGCGTGTTCGCGGTCACTATCATCACGTCGGTGGAGT
CGCTGAGCCGCGACAGCTCCGCTCTGCTCCACCTGCTGCGCTACATGAAC
TACACCACCGTCACGTATTGGCGCGAGGATGCGCTAGTCATGGTGGGCGG
CAACCGGCACGTGGAGCGCGCGCTGTGCGGCGCGTGCCGCGAGCGCACGG
TGATCGATCTGGGCTGGCACAAGGACGTGTTCGAGTGCACCAACTTCCGG
GTAGAGGCGGTGTTTGCGCCGGAAGGGGGCGCTGCTGCTACTGCGGAGGC
GGTGTCGGTGCCGGTGGAGGCGGAGGGGAAGGCGGAGACGGAAGGGAAGG
CGGCGGCGGAGGTGGGGACGGCAGCGGATGCGAGCAGCGTGCGGCTGGTG
GGGAAGAGGGCGGTGGCGGTGGAGCTGAGCGCGCCGTTTGGGGGAGAGAG
CGTGGAGCTGGCGGTGAAGAGCATGGGGCAGTTCGCGGCGCGTCTCGTGC
TGGGCGCCGCCGAGAGCGACGGCGTGGCCACCGTGCTGGCGGTGGAGCGC
GTGCGCAACCTCAAGCGGCTGCCGCCCTCCGGCGCCGCCGCCGTCGTGCG
CCGCCTGGGCTGA
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protein sequence of Ggra9816.t1

>Ggra9816.t1 ID=Ggra9816.t1|Name=Ggra9816.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=371bp
MGLSLHEIERGIGLDLLRRPIITAFLNACLLRIFTDLFLYTGDDDEDDDD
DDDDDDDIDDQEGARMRSFAKDAWQRKCVDSGLSEKGAALAVVLLAQLIR
VLGLAETLAWTFIALLFSTLKLPRVYAFEKLLLDLAVILYRPSVRYVNKR
IRFECGGQHGVPRLHASRHGFGVFAVTIITSVESLSRDSSALLHLLRYMN
YTTVTYWREDALVMVGGNRHVERALCGACRERTVIDLGWHKDVFECTNFR
VEAVFAPEGGAAATAEAVSVPVEAEGKAETEGKAAAEVGTAADASSVRLV
GKRAVAVELSAPFGGESVELAVKSMGQFAARLVLGAAESDGVATVLAVER
VRNLKRLPPSGAAAVVRRLG*
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mRNA from alignment at tig00000160_pilon:12050..13615-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9816.t1 ID=Ggra9816.t1|Name=Ggra9816.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1566bp|location=Sequence derived from alignment at tig00000160_pilon:12050..13615- (Gracilaria gracilis GNS1m male)
ATGGGACTCAGCCTGCACGAAATCGAGCGAGGCATCGGCCTCGATCTGCT
GCGCCGCCCCATCATCACCGCTTTTCTCAACGCCTGCCTGCTGCGCATCT
TCACCGACTTGTTCCTCTACACTGGCGACGACGACGAAGATGACGACGAC
GACGACGATGACGACGATGACATCGACGATCAAGAAGGCGCGCGCATGCG
CAGCTTCGCCAAGGACGCTTGGCAGCGCAAGTGCGTCGACAGCGGGCTGT
CCGAGAAGGGCGCCGCGCTGGCCGTGGTGCTACTGGCGCAGCTGATACGC
GTGCTGGGACTGGCCGAGACACTGGCATGGACGTTCATCGCGCTGCTGTT
CAGCACGCTCAAGCTGCCGCGCGTGTACGCGTTCGAGAAGCTGCTACTGG
ATCTGGCGGTCATTCTGTACCGTCCGTCCGTGCGCTACGTCAACAAGCGC
ATCCGCTTCGAGTGCGGTGGTCAGCACGGCGTGCCACGGCTGCACGCCAG
CCGCCACGGCTTTGGCGTGTTCGCGGTCACTATCATCACGTCGGTGGAGT
CGCTGAGCCGCGACAGCTCCGCTCTGCTCCACCTGCTGCGCTACATGAAC
TACACCACCGTCACGTATTGGCGCGAGGATGCGCTAGTCATGGTGGGCGG
CAACCGGCACGTGGAGCGCGCGCTGTGCGGCGCGTGCCGCGAGCGCACGG
TGATCGATCTGGGCTGGCACAAGGACGTGTTCGAGTGCACCAACTTCCGG
GTAGAGGCGGTGTTTGCGCCGGAAGGGGGCGCTGCTGCTACTGCGGAGGC
GGTGTCGGTGCCGGTGGAGGCGGAGGGGAAGGCGGAGACGGAAGGGAAGG
CGGCGGCGGAGGTGGGGACGGCAGCGGATGCGAGCAGCGTGCGGCTGGTG
GGGAAGAGGGCGGTGGCGGTGGAGCTGAGCGCGCCGTTTGGGGGAGAGAG
CGTGGAGCTGGCGGTGAAGAGCATGGGGCAGTTCGCGGCGGTTTGCGAGG
CGTACGAGCGCGGGCTGCGGCTGTTCAATGGCAAGCGCGTGTCGATCTAC
GCGGTGGGGCTGGTGGTGTCGGGGGCGCTGATTGTGTTTTACGAGGGGCT
GGGCGGGCTGCTGCGGCCGTCGGCGGATGTGCTGACGCTGGCGGTGGGCG
CGTTCACGCTGTGGATGACGGTGGGCAAGAGCGCGGCGCTGGGCGACACG
CAGGAGGAGACGACGCTGGACGTGGCCGCGCGCGACAACCTGCTGCTGGC
GTACCACGGGCTGGCGCGCATCGAGCGCGGCGTGCGCAACATCGGCTGGG
TGCCCGAGGTGTTCCGCGAGCCGCGCAACGCCGACGCCGCCGTCGACGGC
TCCATCGGTGTGCTGGAGGCGGCCATATGCCTCAGCGTGTTCCCCCACCG
CGGCCACTTTGTCAAGTGGAGCGGCCCGCGCCTGCGCCTGCAGCGTCTCG
TGCTGGGCGCCGCCGAGAGCGACGGCGTGGCCACCGTGCTGGCGGTGGAG
CGCGTGCGCAACCTCAAGCGGCTGCCGCCCTCCGGCGCCGCCGCCGTCGT
GCGCCGCCTGGGCTGA
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Coding sequence (CDS) from alignment at tig00000160_pilon:12050..13615-

>Ggra9816.t1 ID=Ggra9816.t1|Name=Ggra9816.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1113bp|location=Sequence derived from alignment at tig00000160_pilon:12050..13615- (Gracilaria gracilis GNS1m male)
ATGGGACTCAGCCTGCACGAAATCGAGCGAGGCATCGGCCTCGATCTGCT
GCGCCGCCCCATCATCACCGCTTTTCTCAACGCCTGCCTGCTGCGCATCT
TCACCGACTTGTTCCTCTACACTGGCGACGACGACGAAGATGACGACGAC
GACGACGATGACGACGATGACATCGACGATCAAGAAGGCGCGCGCATGCG
CAGCTTCGCCAAGGACGCTTGGCAGCGCAAGTGCGTCGACAGCGGGCTGT
CCGAGAAGGGCGCCGCGCTGGCCGTGGTGCTACTGGCGCAGCTGATACGC
GTGCTGGGACTGGCCGAGACACTGGCATGGACGTTCATCGCGCTGCTGTT
CAGCACGCTCAAGCTGCCGCGCGTGTACGCGTTCGAGAAGCTGCTACTGG
ATCTGGCGGTCATTCTGTACCGTCCGTCCGTGCGCTACGTCAACAAGCGC
ATCCGCTTCGAGTGCGGTGGTCAGCACGGCGTGCCACGGCTGCACGCCAG
CCGCCACGGCTTTGGCGTGTTCGCGGTCACTATCATCACGTCGGTGGAGT
CGCTGAGCCGCGACAGCTCCGCTCTGCTCCACCTGCTGCGCTACATGAAC
TACACCACCGTCACGTATTGGCGCGAGGATGCGCTAGTCATGGTGGGCGG
CAACCGGCACGTGGAGCGCGCGCTGTGCGGCGCGTGCCGCGAGCGCACGG
TGATCGATCTGGGCTGGCACAAGGACGTGTTCGAGTGCACCAACTTCCGG
GTAGAGGCGGTGTTTGCGCCGGAAGGGGGCGCTGCTGCTACTGCGGAGGC
GGTGTCGGTGCCGGTGGAGGCGGAGGGGAAGGCGGAGACGGAAGGGAAGG
CGGCGGCGGAGGTGGGGACGGCAGCGGATGCGAGCAGCGTGCGGCTGGTG
GGGAAGAGGGCGGTGGCGGTGGAGCTGAGCGCGCCGTTTGGGGGAGAGAG
CGTGGAGCTGGCGGTGAAGAGCATGGGGCAGTTCGCGGCGCGTCTCGTGC
TGGGCGCCGCCGAGAGCGACGGCGTGGCCACCGTGCTGGCGGTGGAGCGC
GTGCGCAACCTCAAGCGGCTGCCGCCCTCCGGCGCCGCCGCCGTCGTGCG
CCGCCTGGGCTGA
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