Ggra4976.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4976.t1
Unique NameGgra4976.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length655
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000014_piloncontigtig00000014_pilon:221025..223119 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog42345.XP_008798288.1
PFAMsEFG_C,GTP_EFTU,GTP_EFTU_D2
Max annot lvl35493|Streptophyta
KEGG koko:K06207
Evalue5.97e-212
EggNOG OGsCOG0481@1|root,KOG0462@2759|Eukaryota,37HN6@33090|Viridiplantae,3GBWC@35493|Streptophyta,3KN4W@4447|Liliopsida
DescriptionElongation factor G C-terminus
COG categoryJ
BRITEko00000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4976Ggra4976Gracilaria gracilis GNS1m malegenetig00000014_pilon 221025..223119 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4976.t1Ggra4976.t1Gracilaria gracilis GNS1m malepolypeptidetig00000014_pilon 221025..223119 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4976.t1.start1Ggra4976.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000014_pilon 221025..221027 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4976.t1.CDS1Ggra4976.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000014_pilon 221025..221180 +
Ggra4976.t1.CDS2Ggra4976.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000014_pilon 221256..221437 +
Ggra4976.t1.CDS3Ggra4976.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000014_pilon 221493..223119 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4976.t1.exon1Ggra4976.t1.exon1Gracilaria gracilis GNS1m maleexontig00000014_pilon 221025..221180 +
Ggra4976.t1.exon2Ggra4976.t1.exon2Gracilaria gracilis GNS1m maleexontig00000014_pilon 221256..221437 +
Ggra4976.t1.exon3Ggra4976.t1.exon3Gracilaria gracilis GNS1m maleexontig00000014_pilon 221493..223119 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4976.t1.intron1Ggra4976.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000014_pilon 221181..221255 +
Ggra4976.t1.intron2Ggra4976.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000014_pilon 221438..221492 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4976.t1.stop1Ggra4976.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000014_pilon 223117..223119 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4976.t1 ID=Ggra4976.t1|Name=Ggra4976.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=655bp
MSRNAIRFLRSWHLRPGNPYIRALCTQVAHEPLDLVREPSTIRNTAIIAH
VDHGKSTLCDKILRDCSIQVRGERMMDSGDLERERGITITSKVTTAIYKD
HLINVVDSPGHSDFGGEVERILGMVDGAVLLVDATEGPMAQTKFVLSKAL
ALNLKPIVVINKIDRETARPDAVESELFDLFASLDASEEQLDFTTVYASA
KEGWASLALNGGRESGTAPLLDKIIELVPPPKVSVEDPFSFVVTMLGRDT
YLGRIATGKVFSGVARVGDSVHVVNRNGVRKSNAKITKIMASRGLKREEL
EVASAGDIVSLAGISNMSVGDTIAVPPPEATPADCANLEIPTIKPLWAPA
IDPPTVSITVSVNDSPLAGKEGEVLTSQKLAEWLHSEAENNVSIGVEEDD
LTDGLEVKGRGELQLGILVETLRRQGVELALSPPRVLTKEDEKGNILEPV
EEIHVEVDDAHSGMIIEKLSERQATLIEVRPALGDRTRISFLCPSRGLLG
YRQIFTQDTRGTGIMNRIFAEWAPPNASLSSLSSGRKGLLISMASGMTSG
HALASLEARGTLFVGPRQPVYTGMIIGENSRDMDIDVNPVKAKQLTNFRT
HQKDETVRLAPPRIFSLEAAISYVTASELVEVTPKSIRMRKRILDPSQRA
RKKK*
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spliced messenger RNA

>Ggra4976.t1 ID=Ggra4976.t1|Name=Ggra4976.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1965bp|location=Sequence derived from alignment at tig00000014_pilon:221025..223119+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGAGGAATGCGATTCGTTTCTTGCGGTCATGGCATCTGAGGCCTGG
AAACCCATACATTCGTGCTCTGTGCACTCAAGTCGCTCATGAGCCACTTG
ACCTGGTGCGAGAGCCGTCTACCATCCGAAATACAGCGATCATAGCCCAC
GTTGATCATGGGAAATCTACTCTTTGCGACAAAATTCTACGCGATTGTTC
GATACAGGTGCGAGGAGAACGTATGATGGACTCAGGGGATCTGGAACGAG
AACGAGGTATAACAATAACATCCAAAGTAACAACTGCCATCTACAAGGAC
CATCTCATCAACGTCGTTGACTCTCCGGGTCATAGCGATTTTGGTGGCGA
AGTAGAGCGCATTTTAGGTATGGTTGATGGTGCAGTATTACTCGTTGACG
CGACCGAAGGTCCGATGGCGCAGACTAAATTCGTGCTTTCCAAGGCACTT
GCTCTTAATTTGAAGCCGATTGTTGTCATCAACAAGATTGACAGAGAAAC
TGCGCGTCCGGATGCAGTTGAAAGCGAGCTTTTCGATCTGTTTGCTTCAC
TGGATGCGTCTGAAGAACAGTTGGACTTCACTACCGTTTACGCGTCGGCG
AAAGAAGGATGGGCATCTCTTGCGCTCAACGGAGGACGTGAAAGTGGTAC
AGCCCCTTTGCTTGATAAGATCATTGAGCTTGTGCCACCCCCAAAGGTTT
CAGTGGAAGACCCGTTTTCGTTTGTCGTTACCATGCTAGGACGTGATACA
TACCTCGGTCGTATTGCAACGGGAAAGGTGTTCTCCGGAGTTGCAAGAGT
AGGTGATAGCGTTCACGTCGTGAATCGAAACGGTGTACGCAAGTCTAACG
CAAAAATTACGAAGATCATGGCGTCACGAGGCCTAAAACGAGAAGAACTC
GAAGTTGCTTCTGCGGGTGATATAGTATCCTTGGCAGGTATATCTAATAT
GTCTGTAGGTGATACAATTGCCGTTCCGCCTCCTGAAGCCACCCCGGCAG
ACTGTGCGAATCTTGAGATACCAACAATCAAACCGTTATGGGCCCCCGCC
ATTGATCCTCCGACGGTATCCATAACCGTTAGTGTAAATGATTCACCACT
AGCCGGGAAGGAAGGGGAAGTTCTAACAAGCCAGAAACTTGCTGAATGGC
TCCATTCTGAGGCTGAAAACAATGTTTCCATAGGAGTCGAAGAAGATGAT
CTGACCGATGGGCTTGAAGTGAAGGGCAGGGGCGAATTACAACTAGGGAT
TCTTGTTGAAACTCTGCGTCGACAAGGAGTGGAATTAGCATTGTCCCCGC
CTCGCGTTTTGACGAAAGAAGATGAGAAAGGAAACATTTTGGAACCGGTC
GAAGAAATTCACGTTGAGGTCGACGACGCACATTCCGGGATGATTATAGA
AAAGCTCTCGGAGAGACAAGCGACGCTGATTGAAGTGAGGCCAGCATTAG
GAGATAGAACAAGAATCTCGTTCCTGTGTCCTTCTCGCGGCCTTCTTGGA
TATCGTCAAATATTCACCCAAGATACCCGTGGAACGGGAATCATGAACCG
AATTTTCGCGGAATGGGCGCCCCCGAACGCATCATTATCCTCACTTTCGA
GTGGAAGGAAAGGTTTGTTGATATCGATGGCATCAGGAATGACTTCAGGA
CATGCACTGGCATCGTTGGAGGCCAGGGGAACACTCTTCGTAGGTCCACG
ACAACCTGTCTATACTGGAATGATCATTGGAGAGAATAGTAGAGATATGG
ATATCGATGTGAATCCTGTCAAGGCCAAGCAGCTCACGAATTTTCGAACA
CACCAAAAAGATGAAACGGTGCGGCTGGCTCCTCCTCGCATATTCTCACT
TGAAGCTGCGATTAGCTATGTAACTGCGTCAGAGTTAGTTGAGGTAACTC
CGAAGAGCATTCGTATGCGAAAGAGAATACTTGATCCGTCTCAAAGGGCA
CGGAAAAAGAAGTAA
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protein sequence of Ggra4976.t1

>Ggra4976.t1 ID=Ggra4976.t1|Name=Ggra4976.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=655bp
MSRNAIRFLRSWHLRPGNPYIRALCTQVAHEPLDLVREPSTIRNTAIIAH
VDHGKSTLCDKILRDCSIQVRGERMMDSGDLERERGITITSKVTTAIYKD
HLINVVDSPGHSDFGGEVERILGMVDGAVLLVDATEGPMAQTKFVLSKAL
ALNLKPIVVINKIDRETARPDAVESELFDLFASLDASEEQLDFTTVYASA
KEGWASLALNGGRESGTAPLLDKIIELVPPPKVSVEDPFSFVVTMLGRDT
YLGRIATGKVFSGVARVGDSVHVVNRNGVRKSNAKITKIMASRGLKREEL
EVASAGDIVSLAGISNMSVGDTIAVPPPEATPADCANLEIPTIKPLWAPA
IDPPTVSITVSVNDSPLAGKEGEVLTSQKLAEWLHSEAENNVSIGVEEDD
LTDGLEVKGRGELQLGILVETLRRQGVELALSPPRVLTKEDEKGNILEPV
EEIHVEVDDAHSGMIIEKLSERQATLIEVRPALGDRTRISFLCPSRGLLG
YRQIFTQDTRGTGIMNRIFAEWAPPNASLSSLSSGRKGLLISMASGMTSG
HALASLEARGTLFVGPRQPVYTGMIIGENSRDMDIDVNPVKAKQLTNFRT
HQKDETVRLAPPRIFSLEAAISYVTASELVEVTPKSIRMRKRILDPSQRA
RKKK*
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mRNA from alignment at tig00000014_pilon:221025..223119+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4976.t1 ID=Ggra4976.t1|Name=Ggra4976.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2095bp|location=Sequence derived from alignment at tig00000014_pilon:221025..223119+ (Gracilaria gracilis GNS1m male)
ATGTCGAGGAATGCGATTCGTTTCTTGCGGTCATGGCATCTGAGGCCTGG
AAACCCATACATTCGTGCTCTGTGCACTCAAGTCGCTCATGAGCCACTTG
ACCTGGTGCGAGAGCCGTCTACCATCCGAAATACAGCGATCATAGCCCAC
GTTGATGTAAGCAAAGCAAAGAACTATAGAAGCAGTCCCCGTCAAGCAGA
GCAACACATTCTAAGCCTCGCCATATTTTAGCATGGGAAATCTACTCTTT
GCGACAAAATTCTACGCGATTGTTCGATACAGGTGCGAGGAGAACGTATG
ATGGACTCAGGGGATCTGGAACGAGAACGAGGTATAACAATAACATCCAA
AGTAACAACTGCCATCTACAAGGACCATCTCATCAACGTCGTTGACTCTC
CGGGTCATAGCGAGTAAGTTTCTCCTCTAGCTCTCTCTGAAGCCCTTCTA
TTTCTGACATCCAAAAAGTTTTGGTGGCGAAGTAGAGCGCATTTTAGGTA
TGGTTGATGGTGCAGTATTACTCGTTGACGCGACCGAAGGTCCGATGGCG
CAGACTAAATTCGTGCTTTCCAAGGCACTTGCTCTTAATTTGAAGCCGAT
TGTTGTCATCAACAAGATTGACAGAGAAACTGCGCGTCCGGATGCAGTTG
AAAGCGAGCTTTTCGATCTGTTTGCTTCACTGGATGCGTCTGAAGAACAG
TTGGACTTCACTACCGTTTACGCGTCGGCGAAAGAAGGATGGGCATCTCT
TGCGCTCAACGGAGGACGTGAAAGTGGTACAGCCCCTTTGCTTGATAAGA
TCATTGAGCTTGTGCCACCCCCAAAGGTTTCAGTGGAAGACCCGTTTTCG
TTTGTCGTTACCATGCTAGGACGTGATACATACCTCGGTCGTATTGCAAC
GGGAAAGGTGTTCTCCGGAGTTGCAAGAGTAGGTGATAGCGTTCACGTCG
TGAATCGAAACGGTGTACGCAAGTCTAACGCAAAAATTACGAAGATCATG
GCGTCACGAGGCCTAAAACGAGAAGAACTCGAAGTTGCTTCTGCGGGTGA
TATAGTATCCTTGGCAGGTATATCTAATATGTCTGTAGGTGATACAATTG
CCGTTCCGCCTCCTGAAGCCACCCCGGCAGACTGTGCGAATCTTGAGATA
CCAACAATCAAACCGTTATGGGCCCCCGCCATTGATCCTCCGACGGTATC
CATAACCGTTAGTGTAAATGATTCACCACTAGCCGGGAAGGAAGGGGAAG
TTCTAACAAGCCAGAAACTTGCTGAATGGCTCCATTCTGAGGCTGAAAAC
AATGTTTCCATAGGAGTCGAAGAAGATGATCTGACCGATGGGCTTGAAGT
GAAGGGCAGGGGCGAATTACAACTAGGGATTCTTGTTGAAACTCTGCGTC
GACAAGGAGTGGAATTAGCATTGTCCCCGCCTCGCGTTTTGACGAAAGAA
GATGAGAAAGGAAACATTTTGGAACCGGTCGAAGAAATTCACGTTGAGGT
CGACGACGCACATTCCGGGATGATTATAGAAAAGCTCTCGGAGAGACAAG
CGACGCTGATTGAAGTGAGGCCAGCATTAGGAGATAGAACAAGAATCTCG
TTCCTGTGTCCTTCTCGCGGCCTTCTTGGATATCGTCAAATATTCACCCA
AGATACCCGTGGAACGGGAATCATGAACCGAATTTTCGCGGAATGGGCGC
CCCCGAACGCATCATTATCCTCACTTTCGAGTGGAAGGAAAGGTTTGTTG
ATATCGATGGCATCAGGAATGACTTCAGGACATGCACTGGCATCGTTGGA
GGCCAGGGGAACACTCTTCGTAGGTCCACGACAACCTGTCTATACTGGAA
TGATCATTGGAGAGAATAGTAGAGATATGGATATCGATGTGAATCCTGTC
AAGGCCAAGCAGCTCACGAATTTTCGAACACACCAAAAAGATGAAACGGT
GCGGCTGGCTCCTCCTCGCATATTCTCACTTGAAGCTGCGATTAGCTATG
TAACTGCGTCAGAGTTAGTTGAGGTAACTCCGAAGAGCATTCGTATGCGA
AAGAGAATACTTGATCCGTCTCAAAGGGCACGGAAAAAGAAGTAA
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Coding sequence (CDS) from alignment at tig00000014_pilon:221025..223119+

>Ggra4976.t1 ID=Ggra4976.t1|Name=Ggra4976.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1965bp|location=Sequence derived from alignment at tig00000014_pilon:221025..223119+ (Gracilaria gracilis GNS1m male)
ATGTCGAGGAATGCGATTCGTTTCTTGCGGTCATGGCATCTGAGGCCTGG
AAACCCATACATTCGTGCTCTGTGCACTCAAGTCGCTCATGAGCCACTTG
ACCTGGTGCGAGAGCCGTCTACCATCCGAAATACAGCGATCATAGCCCAC
GTTGATCATGGGAAATCTACTCTTTGCGACAAAATTCTACGCGATTGTTC
GATACAGGTGCGAGGAGAACGTATGATGGACTCAGGGGATCTGGAACGAG
AACGAGGTATAACAATAACATCCAAAGTAACAACTGCCATCTACAAGGAC
CATCTCATCAACGTCGTTGACTCTCCGGGTCATAGCGATTTTGGTGGCGA
AGTAGAGCGCATTTTAGGTATGGTTGATGGTGCAGTATTACTCGTTGACG
CGACCGAAGGTCCGATGGCGCAGACTAAATTCGTGCTTTCCAAGGCACTT
GCTCTTAATTTGAAGCCGATTGTTGTCATCAACAAGATTGACAGAGAAAC
TGCGCGTCCGGATGCAGTTGAAAGCGAGCTTTTCGATCTGTTTGCTTCAC
TGGATGCGTCTGAAGAACAGTTGGACTTCACTACCGTTTACGCGTCGGCG
AAAGAAGGATGGGCATCTCTTGCGCTCAACGGAGGACGTGAAAGTGGTAC
AGCCCCTTTGCTTGATAAGATCATTGAGCTTGTGCCACCCCCAAAGGTTT
CAGTGGAAGACCCGTTTTCGTTTGTCGTTACCATGCTAGGACGTGATACA
TACCTCGGTCGTATTGCAACGGGAAAGGTGTTCTCCGGAGTTGCAAGAGT
AGGTGATAGCGTTCACGTCGTGAATCGAAACGGTGTACGCAAGTCTAACG
CAAAAATTACGAAGATCATGGCGTCACGAGGCCTAAAACGAGAAGAACTC
GAAGTTGCTTCTGCGGGTGATATAGTATCCTTGGCAGGTATATCTAATAT
GTCTGTAGGTGATACAATTGCCGTTCCGCCTCCTGAAGCCACCCCGGCAG
ACTGTGCGAATCTTGAGATACCAACAATCAAACCGTTATGGGCCCCCGCC
ATTGATCCTCCGACGGTATCCATAACCGTTAGTGTAAATGATTCACCACT
AGCCGGGAAGGAAGGGGAAGTTCTAACAAGCCAGAAACTTGCTGAATGGC
TCCATTCTGAGGCTGAAAACAATGTTTCCATAGGAGTCGAAGAAGATGAT
CTGACCGATGGGCTTGAAGTGAAGGGCAGGGGCGAATTACAACTAGGGAT
TCTTGTTGAAACTCTGCGTCGACAAGGAGTGGAATTAGCATTGTCCCCGC
CTCGCGTTTTGACGAAAGAAGATGAGAAAGGAAACATTTTGGAACCGGTC
GAAGAAATTCACGTTGAGGTCGACGACGCACATTCCGGGATGATTATAGA
AAAGCTCTCGGAGAGACAAGCGACGCTGATTGAAGTGAGGCCAGCATTAG
GAGATAGAACAAGAATCTCGTTCCTGTGTCCTTCTCGCGGCCTTCTTGGA
TATCGTCAAATATTCACCCAAGATACCCGTGGAACGGGAATCATGAACCG
AATTTTCGCGGAATGGGCGCCCCCGAACGCATCATTATCCTCACTTTCGA
GTGGAAGGAAAGGTTTGTTGATATCGATGGCATCAGGAATGACTTCAGGA
CATGCACTGGCATCGTTGGAGGCCAGGGGAACACTCTTCGTAGGTCCACG
ACAACCTGTCTATACTGGAATGATCATTGGAGAGAATAGTAGAGATATGG
ATATCGATGTGAATCCTGTCAAGGCCAAGCAGCTCACGAATTTTCGAACA
CACCAAAAAGATGAAACGGTGCGGCTGGCTCCTCCTCGCATATTCTCACT
TGAAGCTGCGATTAGCTATGTAACTGCGTCAGAGTTAGTTGAGGTAACTC
CGAAGAGCATTCGTATGCGAAAGAGAATACTTGATCCGTCTCAAAGGGCA
CGGAAAAAGAAGTAA
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