Ggra9817.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9817.t1
Unique NameGgra9817.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length176
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000160_piloncontigtig00000160_pilon:16819..17455 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9817Ggra9817Gracilaria gracilis GNS1m malegenetig00000160_pilon 16819..17455 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9817.t1Ggra9817.t1Gracilaria gracilis GNS1m malepolypeptidetig00000160_pilon 16819..17455 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9817.t1.start1Ggra9817.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000160_pilon 16819..16821 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9817.t1.CDS1Ggra9817.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000160_pilon 16819..17301 +
Ggra9817.t1.CDS2Ggra9817.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000160_pilon 17411..17455 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9817.t1.exon1Ggra9817.t1.exon1Gracilaria gracilis GNS1m maleexontig00000160_pilon 16819..17301 +
Ggra9817.t1.exon2Ggra9817.t1.exon2Gracilaria gracilis GNS1m maleexontig00000160_pilon 17411..17455 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9817.t1.intron1Ggra9817.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000160_pilon 17302..17410 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9817.t1.stop1Ggra9817.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000160_pilon 17453..17455 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9817.t1 ID=Ggra9817.t1|Name=Ggra9817.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=176bp
MRTILPVASCVLILLGFFAVRGLAQQTQPAHPPVVEAVAAEVVAAVGAPQ
TGPSDQVAEISVRYAKPPKREIFTCSNDYLDRCFDSRYNCYDCSRRGNRI
EPPSNIKWLLLLQGEYSGMELYEPEGVQRETYKISSRARGRMGRAWDREG
SNYVKIPEWRAPGCAVRVALISVLR*
back to top

spliced messenger RNA

>Ggra9817.t1 ID=Ggra9817.t1|Name=Ggra9817.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=528bp|location=Sequence derived from alignment at tig00000160_pilon:16819..17455+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGAACAATTTTACCGGTTGCGAGTTGCGTTCTTATATTGTTGGGTTT
CTTTGCGGTTCGCGGGCTGGCGCAACAGACGCAGCCCGCGCACCCGCCTG
TGGTAGAGGCCGTTGCCGCCGAAGTCGTGGCCGCAGTTGGCGCGCCACAA
ACTGGGCCCTCTGACCAAGTTGCCGAGATCTCCGTGCGCTACGCCAAGCC
GCCAAAGCGCGAAATCTTCACCTGTTCGAACGACTACTTGGATCGCTGCT
TCGACTCACGCTACAACTGCTACGATTGCAGCCGAAGGGGTAATCGAATC
GAGCCCCCGTCCAACATCAAGTGGTTGCTGCTGCTGCAGGGCGAGTACAG
CGGCATGGAGCTGTACGAGCCCGAGGGCGTGCAGCGCGAAACGTACAAGA
TATCGTCGCGAGCCAGAGGGCGTATGGGGCGCGCCTGGGACCGTGAAGGC
AGCAACTACGTGAAGATCCCCGAATGGAGAGCTCCGGGCTGTGCTGTCAG
GGTTGCTCTTATCTCAGTACTTAGGTGA
back to top

protein sequence of Ggra9817.t1

>Ggra9817.t1 ID=Ggra9817.t1|Name=Ggra9817.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=176bp
MRTILPVASCVLILLGFFAVRGLAQQTQPAHPPVVEAVAAEVVAAVGAPQ
TGPSDQVAEISVRYAKPPKREIFTCSNDYLDRCFDSRYNCYDCSRRGNRI
EPPSNIKWLLLLQGEYSGMELYEPEGVQRETYKISSRARGRMGRAWDREG
SNYVKIPEWRAPGCAVRVALISVLR*
back to top

mRNA from alignment at tig00000160_pilon:16819..17455+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9817.t1 ID=Ggra9817.t1|Name=Ggra9817.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=637bp|location=Sequence derived from alignment at tig00000160_pilon:16819..17455+ (Gracilaria gracilis GNS1m male)
ATGAGAACAATTTTACCGGTTGCGAGTTGCGTTCTTATATTGTTGGGTTT
CTTTGCGGTTCGCGGGCTGGCGCAACAGACGCAGCCCGCGCACCCGCCTG
TGGTAGAGGCCGTTGCCGCCGAAGTCGTGGCCGCAGTTGGCGCGCCACAA
ACTGGGCCCTCTGACCAAGTTGCCGAGATCTCCGTGCGCTACGCCAAGCC
GCCAAAGCGCGAAATCTTCACCTGTTCGAACGACTACTTGGATCGCTGCT
TCGACTCACGCTACAACTGCTACGATTGCAGCCGAAGGGGTAATCGAATC
GAGCCCCCGTCCAACATCAAGTGGTTGCTGCTGCTGCAGGGCGAGTACAG
CGGCATGGAGCTGTACGAGCCCGAGGGCGTGCAGCGCGAAACGTACAAGA
TATCGTCGCGAGCCAGAGGGCGTATGGGGCGCGCCTGGGACCGTGAAGGC
AGCAACTACGTGAAGATCCCCGAATGGAGAGCTGTGCgtgaaggcgccat
agagtgcattcgcaccgagcccatcggcagaacgtttgggaattGCTGCG
GTGCTTGCAGCTACACCAACTCCCCGTCTCCATCCAATCCAGCCGGGCTG
TGCTGTCAGGGTTGCTCTTATCTCAGTACTTAGGTGA
back to top

Coding sequence (CDS) from alignment at tig00000160_pilon:16819..17455+

>Ggra9817.t1 ID=Ggra9817.t1|Name=Ggra9817.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=528bp|location=Sequence derived from alignment at tig00000160_pilon:16819..17455+ (Gracilaria gracilis GNS1m male)
ATGAGAACAATTTTACCGGTTGCGAGTTGCGTTCTTATATTGTTGGGTTT
CTTTGCGGTTCGCGGGCTGGCGCAACAGACGCAGCCCGCGCACCCGCCTG
TGGTAGAGGCCGTTGCCGCCGAAGTCGTGGCCGCAGTTGGCGCGCCACAA
ACTGGGCCCTCTGACCAAGTTGCCGAGATCTCCGTGCGCTACGCCAAGCC
GCCAAAGCGCGAAATCTTCACCTGTTCGAACGACTACTTGGATCGCTGCT
TCGACTCACGCTACAACTGCTACGATTGCAGCCGAAGGGGTAATCGAATC
GAGCCCCCGTCCAACATCAAGTGGTTGCTGCTGCTGCAGGGCGAGTACAG
CGGCATGGAGCTGTACGAGCCCGAGGGCGTGCAGCGCGAAACGTACAAGA
TATCGTCGCGAGCCAGAGGGCGTATGGGGCGCGCCTGGGACCGTGAAGGC
AGCAACTACGTGAAGATCCCCGAATGGAGAGCTCCGGGCTGTGCTGTCAG
GGTTGCTCTTATCTCAGTACTTAGGTGA
back to top